Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47326 * 2 1 4 4 C 1.37726 * 119.95371 * 100.25413 * 3 2 1 5 5 C 1.39720 * 119.90657 * 180.25314 * 4 3 2 6 6 C 1.47600 * 120.08352 * 179.74674 * 5 4 3 7 7 O 1.21586 * 120.00397 * 4.88001 * 6 5 4 8 8 N 1.34781 * 119.99858 * 184.88384 * 6 5 4 9 9 C 1.46496 * 120.00205 * 185.07435 * 8 6 5 10 10 C 1.52999 * 109.47281 * 184.99623 * 9 8 6 11 11 C 1.50701 * 115.55182 * 54.23613 * 10 9 8 12 12 H 1.07998 * 120.00346 * 215.59512 * 11 10 9 13 13 C 1.37877 * 119.99659 * 35.32232 * 11 10 9 14 14 N 1.31520 * 120.00401 * 355.77953 * 13 11 10 15 15 Si 1.86804 * 120.00221 * 175.78328 * 13 11 10 16 16 H 1.48496 * 109.47119 * 59.99323 * 15 13 11 17 17 H 1.48493 * 109.47591 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46854 * 299.99887 * 15 13 11 19 19 C 1.52999 * 117.49858 * 199.90978 * 10 9 8 20 20 C 1.53001 * 117.49754 * 268.56939 * 10 9 8 21 21 C 1.39749 * 119.82511 * 359.47281 * 5 4 3 22 22 C 1.37682 * 119.91054 * 0.27471 * 21 5 4 23 23 C 1.38977 * 119.95748 * 280.00407 * 3 2 1 24 24 O 1.35712 * 119.90707 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46904 * 299.99914 * 1 2 3 27 27 H 1.08993 * 109.47454 * 59.99718 * 1 2 3 28 28 H 1.08998 * 109.47082 * 239.99900 * 2 1 3 29 29 H 1.09001 * 109.47334 * 119.99920 * 2 1 3 30 30 H 1.08000 * 120.04742 * 0.02604 * 4 3 2 31 31 H 0.97001 * 119.99524 * 5.07749 * 8 6 5 32 32 H 1.08998 * 109.47476 * 64.99603 * 9 8 6 33 33 H 1.09005 * 109.47218 * 304.99486 * 9 8 6 34 34 H 0.96996 * 120.00335 * 185.00428 * 14 13 11 35 35 H 1.09004 * 117.49717 * 214.99755 * 19 10 9 36 36 H 1.08996 * 117.50215 * 0.02562 * 19 10 9 37 37 H 1.08999 * 117.50008 * 359.97438 * 20 10 9 38 38 H 1.09000 * 117.49706 * 144.97270 * 20 10 9 39 39 H 1.07997 * 120.04285 * 180.28892 * 21 5 4 40 40 H 1.08001 * 119.95486 * 179.97438 * 22 21 5 41 41 H 0.96696 * 113.99843 * 270.02341 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4618 1.9983 1.1742 5 6 2.9225 3.3174 1.1741 6 6 3.3784 3.9420 2.4313 7 8 3.4376 3.2828 3.4512 8 7 3.7292 5.2433 2.4487 9 6 4.2866 5.8354 3.6672 10 6 4.4811 7.3389 3.4608 11 6 3.2585 8.0969 3.0115 12 1 3.3584 8.9250 2.3256 13 6 2.0119 7.7294 3.4718 14 7 1.8798 6.6674 4.2364 15 14 0.5103 8.7399 3.0096 16 1 0.3579 8.7528 1.5325 17 1 -0.6996 8.1392 3.6263 18 1 0.6789 10.1307 3.5019 19 6 5.4559 8.0598 4.3940 20 6 5.8378 7.8098 2.9329 21 6 2.9557 4.0419 -0.0205 22 6 2.5294 3.4556 -1.1911 23 6 2.0665 2.1448 -1.1858 24 8 1.6476 1.5703 -2.3417 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4392 1.4336 2.0945 31 1 3.6126 5.7876 1.6544 32 1 5.2477 5.3719 3.8897 33 1 3.6016 5.6685 4.4985 34 1 0.9963 6.3668 4.5005 35 1 5.2130 9.0824 4.6830 36 1 5.9590 7.4630 5.1547 37 1 6.5919 7.0485 2.7331 38 1 5.8459 8.6675 2.2604 39 1 3.3154 5.0601 -0.0255 40 1 2.5544 4.0149 -2.1146 41 1 2.3465 1.1138 -2.8298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487582421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = -57.373267 kcal Electronic energy + Delta-G solvation = -22872.867949 eV Core-core repulsion = 19524.535575 eV Total energy + Delta-G solvation = -3348.332374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32709 -40.08670 -38.47661 -37.34083 -35.27693 -34.60441 -34.10792 -31.32724 -30.32306 -27.85046 -27.17287 -24.95952 -24.06699 -22.97381 -22.61227 -21.15346 -20.79543 -19.29569 -18.83658 -17.84343 -17.18574 -16.75836 -16.46809 -16.19425 -15.88063 -15.78437 -15.20440 -14.86548 -14.67032 -14.56808 -14.21333 -14.07955 -13.66837 -13.38370 -13.26783 -13.06820 -12.89058 -12.69137 -12.56868 -12.44776 -12.31835 -12.03303 -11.86929 -11.55274 -11.29372 -10.96935 -10.79473 -10.64265 -10.15795 -9.92815 -9.77566 -9.45439 -7.94031 -6.20763 -0.20070 0.30857 1.41465 1.44633 1.50673 1.91816 2.39795 2.49465 2.83293 3.07427 3.21992 3.63611 3.71271 3.86574 3.94811 4.18661 4.24804 4.30604 4.46735 4.52142 4.55229 4.57008 4.74685 4.79577 4.82587 4.96699 5.01519 5.03838 5.06018 5.13853 5.23571 5.29953 5.36827 5.38882 5.48786 5.53276 5.60208 5.75605 5.88397 5.99006 6.36461 6.77289 6.85327 6.95574 7.44812 7.50391 8.90916 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.004561 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.259626 B = 6137.846553 C = 6596.414714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.060 4.060 5 C -0.152 4.152 6 C 0.541 3.459 7 O -0.601 6.601 8 N -0.670 5.670 9 C 0.174 3.826 10 C 0.006 3.994 11 C -0.504 4.504 12 H 0.061 0.939 13 C 0.035 3.965 14 N -0.890 5.890 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.296 1.296 18 H -0.273 1.273 19 C -0.200 4.200 20 C -0.184 4.184 21 C -0.076 4.076 22 C -0.147 4.147 23 C 0.137 3.863 24 O -0.494 6.494 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.403 0.597 32 H 0.018 0.982 33 H 0.080 0.920 34 H 0.255 0.745 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -10.283 -14.152 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.121 4.121 4 C -0.079 4.079 5 C -0.155 4.155 6 C 0.329 3.671 7 O -0.485 6.485 8 N -0.316 5.316 9 C 0.050 3.950 10 C 0.005 3.995 11 C -0.541 4.541 12 H 0.079 0.921 13 C -0.167 4.167 14 N -0.527 5.527 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.222 1.222 18 H -0.199 1.199 19 C -0.239 4.239 20 C -0.221 4.221 21 C -0.095 4.095 22 C -0.165 4.165 23 C 0.092 3.908 24 O -0.307 6.307 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.239 0.761 32 H 0.036 0.964 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.157 0.843 40 H 0.178 0.822 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.540 -10.549 -13.131 16.852 hybrid contribution -0.399 0.865 0.050 0.954 sum 0.141 -9.684 -13.081 16.276 Atomic orbital electron populations 1.21710 0.94507 1.02477 1.01394 1.20451 0.96367 0.90394 1.03871 1.20364 1.01048 0.98486 0.92229 1.21053 0.95371 0.93195 0.98308 1.20053 1.05913 0.96241 0.93318 1.18620 0.77467 0.82533 0.88432 1.90654 1.57422 1.64334 1.36110 1.45461 1.61455 1.08882 1.15835 1.20781 0.94480 0.91135 0.88616 1.19267 0.89168 0.91220 0.99816 1.20674 0.90397 1.15529 1.27504 0.92096 1.25600 1.01213 0.95596 0.94283 1.70052 1.22941 1.24056 1.35631 0.85801 0.79058 0.79165 0.78767 1.19111 1.22184 1.19879 1.22962 1.06890 1.01254 0.92757 1.22957 0.99883 1.03061 0.96176 1.21363 0.97082 0.99854 0.91157 1.21570 1.00147 0.95551 0.99272 1.18466 0.94844 0.91386 0.86114 1.84712 1.39627 1.73362 1.33040 0.90568 0.94341 0.92600 0.88661 0.90796 0.85905 0.76130 0.96354 0.90223 0.93542 0.90427 0.90638 0.89615 0.89536 0.84300 0.82224 0.72681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.89 71.98 0.71 -2.06 16 2 C -0.07 -1.40 5.72 29.85 0.17 -1.23 16 3 C -0.12 -3.01 5.14 -19.81 -0.10 -3.11 16 4 C -0.06 -1.93 9.20 22.51 0.21 -1.73 16 5 C -0.15 -5.44 5.87 -20.08 -0.12 -5.56 16 6 C 0.54 24.25 7.75 86.71 0.67 24.92 16 7 O -0.60 -31.37 16.33 -3.99 -0.07 -31.44 16 8 N -0.67 -29.72 4.96 -466.20 -2.31 -32.04 16 9 C 0.17 8.46 4.62 86.38 0.40 8.85 16 10 C 0.01 0.28 2.04 -52.93 -0.11 0.17 16 11 C -0.50 -25.27 8.44 25.60 0.22 -25.06 16 12 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 13 C 0.03 1.80 5.31 84.65 0.45 2.25 16 14 N -0.89 -49.40 10.11 21.45 0.22 -49.18 16 15 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C -0.20 -8.50 9.96 30.62 0.30 -8.19 16 20 C -0.18 -7.16 9.92 30.62 0.30 -6.86 16 21 C -0.08 -2.20 9.51 22.50 0.21 -1.98 16 22 C -0.15 -3.40 9.97 22.32 0.22 -3.18 16 23 C 0.14 3.05 6.68 22.63 0.15 3.20 16 24 O -0.49 -8.04 12.61 -90.33 -1.14 -9.18 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 1.13 8.04 -2.39 -0.02 1.11 16 28 H 0.10 1.34 7.85 -2.39 -0.02 1.32 16 29 H 0.07 1.38 7.99 -2.39 -0.02 1.36 16 30 H 0.12 4.20 7.62 -2.91 -0.02 4.18 16 31 H 0.40 16.48 6.20 -92.71 -0.58 15.90 16 32 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.08 4.56 5.89 -2.38 -0.01 4.54 16 34 H 0.25 14.14 8.32 -92.71 -0.77 13.37 16 35 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.18 16 39 H 0.14 3.77 6.47 -2.91 -0.02 3.75 16 40 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.41 2.47 9.06 -74.06 -0.67 1.80 16 Total: -1.00 -65.84 345.16 2.23 -63.61 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.19 Total: 33.98 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.70 Total: -19.56 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.10 Total: -81.22 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -1.20 Total: -40.62 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -65.84 2.23 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487582421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.236 kcal (2) G-P(sol) polarization free energy of solvation -65.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds