Wall clock time and date at job start Tue Mar 31 2020 07:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46918 * 2 1 4 4 C 1.53001 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46667 * 55.00046 * 4 3 2 6 6 C 1.53005 * 109.47231 * 295.00717 * 4 3 2 7 7 C 1.53003 * 109.46895 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47066 * 59.99889 * 7 6 4 9 9 C 1.53000 * 109.46872 * 299.99689 * 8 7 6 10 10 C 1.52991 * 109.47145 * 175.00356 * 4 3 2 11 11 H 1.08997 * 109.47399 * 59.99735 * 10 4 3 12 12 N 1.46503 * 109.47023 * 299.99984 * 10 4 3 13 13 S 1.65602 * 119.99968 * 145.00175 * 12 10 4 14 14 O 1.42098 * 104.27587 * 308.93169 * 13 12 10 15 15 O 1.42095 * 104.27880 * 181.07119 * 13 12 10 16 16 C 1.81401 * 104.45136 * 64.99789 * 13 12 10 17 17 C 1.50694 * 109.47151 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09002 * 109.47635 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47227 * 299.99545 * 1 2 3 27 27 H 1.09002 * 109.47643 * 59.99234 * 1 2 3 28 28 H 1.08997 * 109.46520 * 240.00603 * 2 1 3 29 29 H 1.08995 * 109.47008 * 120.00751 * 2 1 3 30 30 H 1.09001 * 109.46800 * 60.00193 * 3 2 1 31 31 H 1.08996 * 109.47411 * 300.00421 * 3 2 1 32 32 H 1.08997 * 109.47188 * 59.99459 * 6 4 3 33 33 H 1.09005 * 109.46707 * 299.99826 * 6 4 3 34 34 H 1.08991 * 109.47251 * 299.99612 * 7 6 4 35 35 H 1.09003 * 109.46694 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.46889 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.47078 * 59.99972 * 8 7 6 38 38 H 1.08999 * 109.47500 * 300.00024 * 9 8 7 39 39 H 1.09003 * 109.46939 * 180.02562 * 9 8 7 40 40 H 0.96996 * 119.99934 * 325.00270 * 12 10 4 41 41 H 1.09007 * 109.46823 * 59.99900 * 16 13 12 42 42 H 1.09003 * 109.46953 * 300.00645 * 16 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8329 1.3083 7 6 5.6095 0.8324 1.3085 8 6 6.1200 2.2692 1.1826 9 6 5.6105 2.8787 -0.1250 10 6 4.0800 2.8795 -0.1250 11 1 3.7163 3.4690 0.7166 12 7 3.5922 3.4631 -1.3771 13 16 3.1984 5.0702 -1.4434 14 8 2.3227 5.2622 -0.3408 15 8 2.7505 5.2666 -2.7775 16 6 4.7697 5.9331 -1.1659 17 6 4.5387 7.4218 -1.2031 18 1 3.5458 7.8101 -1.3760 19 6 5.5949 8.2883 -1.0165 20 7 6.8039 7.8155 -0.8055 21 14 5.3086 10.1336 -1.0635 22 1 6.5950 10.8400 -0.8362 23 1 4.7609 10.5160 -2.3897 24 1 4.3423 10.5117 -0.0012 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.7160 -0.1908 1.3978 33 1 3.7158 1.4225 2.1499 34 1 5.9728 0.2427 0.4670 35 1 5.9724 0.3985 2.2403 36 1 7.2100 2.2689 1.1833 37 1 5.7567 2.8590 2.0243 38 1 5.9738 2.2890 -0.9666 39 1 5.9746 3.9022 -0.2149 40 1 3.4998 2.9081 -2.1672 41 1 5.4793 5.6555 -1.9454 42 1 5.1714 5.6523 -0.1922 43 1 7.5470 8.4251 -0.6746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582467881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:43 Heat of formation + Delta-G solvation = -122.853859 kcal Electronic energy + Delta-G solvation = -22439.415059 eV Core-core repulsion = 19223.687185 eV Total energy + Delta-G solvation = -3215.727874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.25641 -36.07050 -34.96633 -34.89206 -33.88643 -33.34423 -30.78685 -29.07037 -28.65323 -25.82567 -23.60947 -22.68928 -21.71022 -20.46313 -19.99990 -18.56678 -17.18009 -16.26109 -16.16517 -15.40225 -15.23157 -14.70913 -14.47738 -14.17185 -14.08837 -13.85011 -13.27902 -13.21650 -12.77488 -12.56208 -12.44774 -12.10267 -11.84079 -11.48721 -11.40389 -11.26654 -11.15160 -11.13737 -11.07222 -11.00810 -10.90311 -10.83809 -10.62959 -10.57453 -10.41890 -10.29194 -9.95202 -9.73140 -9.31539 -8.71259 -8.69722 -6.32753 -4.43038 1.38395 3.23936 3.26098 3.31051 3.64224 4.24563 4.58418 4.73983 4.80234 4.84850 5.00899 5.02141 5.10077 5.21354 5.27153 5.30780 5.33000 5.51848 5.54396 5.57693 5.66291 5.73772 5.74797 5.84280 5.88604 5.98985 6.05266 6.09395 6.15897 6.18598 6.27097 6.33244 6.37159 6.43366 6.51634 6.64938 6.73417 6.81876 7.45118 7.51458 7.76478 8.58651 9.24468 10.78834 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.004995 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.365155 B = 5604.152402 C = 6571.744905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.086 4.086 5 H 0.073 0.927 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.148 4.148 10 C 0.157 3.843 11 H 0.090 0.910 12 N -1.125 6.125 13 S 2.581 3.419 14 O -0.982 6.982 15 O -0.985 6.985 16 C -0.420 4.420 17 C -0.535 4.535 18 H 0.068 0.932 19 C 0.077 3.923 20 N -0.878 5.878 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.407 0.593 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 -16.039 3.704 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.106 4.106 5 H 0.091 0.909 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.187 4.187 10 C 0.050 3.950 11 H 0.108 0.892 12 N -0.879 5.879 13 S 2.681 3.319 14 O -0.972 6.972 15 O -0.975 6.975 16 C -0.555 4.555 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.129 4.129 20 N -0.514 5.514 21 Si 0.729 3.271 22 H -0.207 1.207 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.239 0.761 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.448 -15.562 3.741 16.373 hybrid contribution 0.684 0.662 -0.290 0.995 sum -2.764 -14.900 3.451 15.542 Atomic orbital electron populations 1.21787 0.96200 1.01101 1.02030 1.21579 0.95614 0.97271 1.01666 1.21674 0.94572 0.96244 1.03108 1.21379 0.95431 0.95402 0.98379 0.90868 1.21636 0.95458 1.00764 0.97367 1.21568 0.95606 0.97149 1.01406 1.21498 1.00441 0.95720 0.97948 1.22258 0.95439 1.03005 0.97970 1.20760 0.93166 0.94750 0.86373 0.89191 1.55896 1.84424 1.29431 1.18183 1.05872 0.79400 0.72843 0.73794 1.93470 1.63948 1.84577 1.55160 1.93479 1.81668 1.84475 1.37894 1.27811 1.13475 1.07421 1.06835 1.20295 0.95857 0.87529 1.53770 0.91420 1.24908 0.94650 0.99839 0.93494 1.69938 0.99571 1.35824 1.46085 0.86460 0.77910 0.83360 0.79414 1.20723 1.19446 1.19438 0.93166 0.92732 0.92745 0.92355 0.92010 0.91584 0.91420 0.91692 0.91651 0.92139 0.92240 0.91770 0.91661 0.91489 0.89937 0.76101 0.89690 0.89642 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.21 5.69 -26.73 -0.15 -1.36 16 3 C -0.12 -1.42 4.60 -26.73 -0.12 -1.54 16 4 C -0.09 -0.99 1.82 -90.62 -0.17 -1.15 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -1.14 4.96 -26.73 -0.13 -1.28 16 7 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 8 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 9 C -0.15 -2.02 5.49 -26.70 -0.15 -2.16 16 10 C 0.16 2.25 2.14 -67.91 -0.15 2.10 16 11 H 0.09 1.42 7.48 -51.93 -0.39 1.03 16 12 N -1.13 -17.93 4.51 -4.87 -0.02 -17.95 16 13 S 2.58 54.94 5.36 -107.50 -0.58 54.37 16 14 O -0.98 -23.18 17.39 -57.54 -1.00 -24.18 16 15 O -0.98 -23.55 18.08 -57.54 -1.04 -24.59 16 16 C -0.42 -10.02 4.98 36.00 0.18 -9.84 16 17 C -0.54 -14.77 9.13 -34.44 -0.31 -15.09 16 18 H 0.07 1.85 7.71 -52.49 -0.40 1.44 16 19 C 0.08 2.12 5.46 -17.82 -0.10 2.03 16 20 N -0.88 -24.53 13.29 55.43 0.74 -23.79 16 21 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.90 7.45 -51.93 -0.39 0.52 16 32 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.32 5.79 -51.93 -0.30 1.02 16 40 H 0.41 5.58 8.80 -34.47 -0.30 5.28 16 41 H 0.09 2.02 8.14 -51.92 -0.42 1.60 16 42 H 0.09 2.00 6.78 -51.92 -0.35 1.65 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -32.16 346.80 -10.19 -42.35 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.45 Total: 4.91 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -1.05 Total: -32.27 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.71 Total: -41.75 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -2.04 Total: -48.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.58 Total: 54.37 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.16 -10.19 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582467881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.501 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds