Wall clock time and date at job start Tue Mar 31 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47498 * 2 1 4 4 C 1.38350 * 119.85489 * 89.99614 * 3 2 1 5 5 C 1.37960 * 120.14937 * 180.02562 * 4 3 2 6 6 C 1.39578 * 119.84916 * 0.03097 * 5 4 3 7 7 C 1.47844 * 120.14432 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99873 * 352.51298 * 7 6 5 9 9 N 1.34780 * 119.99834 * 172.50869 * 7 6 5 10 10 C 1.47018 * 125.64922 * 5.23646 * 9 7 6 11 11 C 1.54324 * 107.26888 * 181.02390 * 10 9 7 12 12 C 1.55154 * 102.94467 * 22.19045 * 11 10 9 13 13 O 1.42902 * 111.00483 * 82.57603 * 12 11 10 14 14 C 1.50707 * 111.00467 * 206.42511 * 12 11 10 15 15 H 1.07993 * 119.99926 * 120.78646 * 14 12 11 16 16 C 1.37870 * 119.99911 * 300.79259 * 14 12 11 17 17 N 1.31510 * 120.00190 * 177.89969 * 16 14 12 18 18 Si 1.86806 * 120.00262 * 357.89297 * 16 14 12 19 19 H 1.48504 * 109.46726 * 93.61346 * 18 16 14 20 20 H 1.48496 * 109.47442 * 213.61497 * 18 16 14 21 21 H 1.48500 * 109.46842 * 333.61794 * 18 16 14 22 22 C 1.47430 * 125.64618 * 185.19010 * 9 7 6 23 23 C 1.39580 * 119.71039 * 0.24302 * 6 5 4 24 24 C 1.37958 * 119.85253 * 359.47665 * 23 6 5 25 25 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47210 * 300.00415 * 1 2 3 27 27 H 1.09000 * 109.47028 * 60.00325 * 1 2 3 28 28 H 1.09006 * 109.47317 * 239.99935 * 2 1 3 29 29 H 1.09001 * 109.47344 * 120.00118 * 2 1 3 30 30 H 1.07998 * 119.93023 * 0.02927 * 4 3 2 31 31 H 1.08004 * 120.07741 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.88417 * 61.60684 * 10 9 7 33 33 H 1.09001 * 109.88171 * 300.43844 * 10 9 7 34 34 H 1.09007 * 110.71831 * 263.82762 * 11 10 9 35 35 H 1.08996 * 110.72040 * 140.56060 * 11 10 9 36 36 H 0.96700 * 113.99770 * 180.02562 * 13 12 11 37 37 H 0.97000 * 120.00759 * 179.97438 * 17 16 14 38 38 H 1.09006 * 110.36354 * 37.07431 * 22 9 7 39 39 H 1.08998 * 110.36592 * 274.74877 * 22 9 7 40 40 H 1.07997 * 120.07087 * 179.72849 * 23 6 5 41 41 H 1.08001 * 119.92689 * 180.27000 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0701 1.1999 5 6 2.7214 3.3710 1.2070 6 6 2.9540 4.0322 0.0000 7 6 3.4458 5.4264 -0.0001 8 8 3.5191 6.0450 1.0437 9 7 3.8130 6.0114 -1.1574 10 6 3.6746 5.4220 -2.4971 11 6 4.2489 6.4384 -3.5064 12 6 5.1940 7.3022 -2.6301 13 8 6.4635 6.6669 -2.4662 14 6 5.3548 8.6842 -3.2094 15 1 5.0753 9.5496 -2.6271 16 6 5.8587 8.8435 -4.4828 17 7 5.9605 10.0466 -5.0040 18 14 6.3972 7.3504 -5.4679 19 1 5.2729 6.8887 -6.3213 20 1 7.5531 7.7141 -6.3262 21 1 6.7933 6.2614 -4.5393 22 6 4.4191 7.3489 -1.2897 23 6 2.7149 3.3732 -1.2071 24 6 2.2610 2.0704 -1.2000 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0811 1.5576 2.1332 31 1 2.8998 3.8769 2.1444 32 1 2.6224 5.2380 -2.7143 33 1 4.2351 4.4887 -2.5512 34 1 3.4534 7.0493 -3.9335 35 1 4.8086 5.9289 -4.2907 36 1 7.0878 7.1695 -1.9252 37 1 6.3154 10.1588 -5.8998 38 1 5.1031 7.5388 -0.4625 39 1 3.6442 8.1146 -1.3258 40 1 2.8888 3.8807 -2.1444 41 1 2.0798 1.5580 -2.1333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:21 Heat of formation + Delta-G solvation = -56.350086 kcal Electronic energy + Delta-G solvation = -23042.938474 eV Core-core repulsion = 19694.650469 eV Total energy + Delta-G solvation = -3348.288005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67526 -39.97630 -38.95234 -36.39480 -34.99681 -34.52755 -32.34053 -31.89921 -30.76313 -29.79766 -27.33464 -25.54166 -24.34045 -23.45577 -22.01883 -21.62858 -21.03635 -19.37833 -18.45469 -17.42807 -16.98392 -16.78740 -16.69911 -16.26836 -15.92405 -15.35706 -15.07480 -14.93051 -14.77128 -14.63631 -14.38929 -14.20419 -14.13558 -13.79812 -13.49862 -13.15310 -12.98452 -12.84038 -12.68610 -12.39201 -12.33519 -12.02820 -11.89242 -11.82443 -11.55918 -10.98489 -10.88083 -10.81434 -10.38742 -9.96298 -9.81461 -9.55137 -8.36666 -6.53660 -0.15630 0.42007 1.37889 1.47926 1.71506 1.76778 1.91993 2.39789 2.84273 2.98895 3.36471 3.52615 3.70972 3.85350 3.91613 4.00696 4.05499 4.13699 4.29739 4.36335 4.42629 4.44843 4.55686 4.58938 4.66589 4.73467 4.90282 4.95298 5.01583 5.02294 5.11069 5.13161 5.16550 5.34270 5.36132 5.43531 5.43961 5.50784 5.63428 5.96423 6.05589 6.45972 6.58008 7.01118 7.10183 7.27101 8.77540 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.004026 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.073529 B = 6953.700087 C = 7601.212451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.056 4.056 4 C -0.129 4.129 5 C -0.074 4.074 6 C -0.156 4.156 7 C 0.561 3.439 8 O -0.593 6.593 9 N -0.604 5.604 10 C 0.098 3.902 11 C -0.131 4.131 12 C 0.217 3.783 13 O -0.572 6.572 14 C -0.552 4.552 15 H 0.037 0.963 16 C 0.037 3.963 17 N -0.936 5.936 18 Si 0.934 3.066 19 H -0.266 1.266 20 H -0.308 1.308 21 H -0.207 1.207 22 C 0.099 3.901 23 C -0.120 4.120 24 C -0.126 4.126 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.170 0.830 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -23.198 5.566 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.057 4.057 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.159 4.159 7 C 0.353 3.647 8 O -0.476 6.476 9 N -0.334 5.334 10 C -0.023 4.023 11 C -0.169 4.169 12 C 0.176 3.824 13 O -0.379 6.379 14 C -0.590 4.590 15 H 0.055 0.945 16 C -0.163 4.163 17 N -0.574 5.574 18 Si 0.759 3.241 19 H -0.192 1.192 20 H -0.236 1.236 21 H -0.129 1.129 22 C -0.024 4.024 23 C -0.138 4.138 24 C -0.144 4.144 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.139 0.861 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.223 0.777 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.186 0.814 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.680 -23.262 5.670 25.826 hybrid contribution 0.781 1.294 -0.010 1.511 sum -8.899 -21.968 5.660 24.368 Atomic orbital electron populations 1.21746 0.93990 1.02647 1.02006 1.20678 0.96595 0.90626 1.04392 1.20541 0.95005 0.97375 0.92742 1.21235 1.00411 0.93611 0.99375 1.21300 0.95970 0.95165 0.96848 1.19804 1.07148 0.92737 0.96232 1.18602 0.77160 0.87138 0.81800 1.90696 1.57877 1.66545 1.32434 1.48438 1.60179 1.18114 1.06708 1.22725 1.01880 0.97100 0.80588 1.23020 0.98990 0.97213 0.97632 1.19961 0.81963 0.90307 0.90121 1.86431 1.25498 1.51383 1.74625 1.21323 1.45159 0.91757 1.00752 0.94452 1.25786 0.93441 0.98739 0.98363 1.70057 1.45785 1.24621 1.16985 0.86166 0.77781 0.81824 0.78378 1.19164 1.23616 1.12948 1.22770 0.96791 0.83553 0.99258 1.22907 0.96010 0.96034 0.98839 1.21382 0.99805 0.93995 0.99200 0.90834 0.93031 0.92740 0.89389 0.89732 0.83267 0.86086 0.87735 0.88712 0.89275 0.89919 0.77695 0.92211 0.92334 0.92071 0.81362 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.89 71.98 0.71 -0.70 16 2 C -0.09 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.06 -0.93 5.14 -19.81 -0.10 -1.04 16 4 C -0.13 -2.49 9.68 22.23 0.22 -2.27 16 5 C -0.07 -1.95 9.59 22.53 0.22 -1.74 16 6 C -0.16 -4.64 5.87 -20.09 -0.12 -4.76 16 7 C 0.56 21.15 7.81 86.79 0.68 21.83 16 8 O -0.59 -26.56 16.67 -3.88 -0.06 -26.63 16 9 N -0.60 -22.12 3.33 -826.39 -2.75 -24.87 16 10 C 0.10 2.92 4.87 86.73 0.42 3.34 16 11 C -0.13 -4.79 4.77 31.78 0.15 -4.64 16 12 C 0.22 9.41 0.70 -10.15 -0.01 9.40 16 13 O -0.57 -23.88 10.46 -148.98 -1.56 -25.44 16 14 C -0.55 -29.49 8.84 25.60 0.23 -29.26 16 15 H 0.04 2.25 8.04 -2.91 -0.02 2.23 16 16 C 0.04 2.04 5.45 84.65 0.46 2.50 16 17 N -0.94 -55.96 13.96 21.44 0.30 -55.66 16 18 Si 0.93 41.54 24.17 68.60 1.66 43.20 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.31 -14.19 7.11 99.48 0.71 -13.49 16 21 H -0.21 -8.68 5.17 99.48 0.51 -8.16 16 22 C 0.10 4.17 6.07 86.85 0.53 4.69 16 23 C -0.12 -2.78 8.60 22.53 0.19 -2.58 16 24 C -0.13 -2.22 9.68 22.23 0.22 -2.01 16 25 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.71 8.08 -2.38 -0.02 0.69 16 29 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.12 3.39 7.67 -2.91 -0.02 3.37 16 32 H 0.11 2.44 6.81 -2.39 -0.02 2.42 16 33 H 0.10 2.48 6.66 -2.39 -0.02 2.47 16 34 H 0.09 3.28 8.03 -2.38 -0.02 3.26 16 35 H 0.08 2.93 4.99 -2.39 -0.01 2.92 16 36 H 0.37 14.22 9.06 -74.06 -0.67 13.55 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.06 2.55 8.09 -2.38 -0.02 2.53 16 39 H 0.06 2.69 8.03 -2.39 -0.02 2.67 16 40 H 0.17 3.51 2.77 -7.23 -0.02 3.49 16 41 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -70.98 326.16 1.73 -69.25 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.18 Total: 28.08 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 3.97 Total: -7.93 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.45 Total: -80.53 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -1.62 Total: -52.07 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.66 Total: 43.20 kcal Total: -70.98 1.73 -69.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.896 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds