Wall clock time and date at job start Tue Mar 31 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47141 * 2 1 4 4 C 1.53008 * 109.46920 * 239.99920 * 2 1 3 5 5 C 1.52995 * 109.46947 * 120.00213 * 2 1 3 6 6 C 1.53004 * 109.47296 * 59.99898 * 5 2 1 7 7 H 1.08999 * 115.54701 * 29.32905 * 6 5 2 8 8 C 1.52997 * 117.51806 * 243.62855 * 6 5 2 9 9 C 1.53000 * 60.00187 * 252.52071 * 8 6 5 10 10 H 1.08994 * 117.52118 * 107.48094 * 9 8 6 11 11 N 1.46500 * 117.49444 * 252.51501 * 9 8 6 12 12 S 1.65608 * 119.99645 * 213.61927 * 11 9 8 13 13 O 1.42102 * 104.27540 * 308.92809 * 12 11 9 14 14 O 1.42095 * 104.27707 * 181.07170 * 12 11 9 15 15 C 1.81396 * 104.44869 * 64.99969 * 12 11 9 16 16 C 1.53004 * 109.47142 * 180.02562 * 15 12 11 17 17 C 1.50701 * 109.47211 * 180.02562 * 16 15 12 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99694 * 180.27574 * 17 16 15 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 16 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 16 22 22 H 1.48504 * 109.47209 * 89.99886 * 21 19 17 23 23 H 1.48501 * 109.47358 * 209.99377 * 21 19 17 24 24 H 1.48496 * 109.47341 * 329.99989 * 21 19 17 25 25 H 1.08999 * 109.47263 * 299.99996 * 1 2 3 26 26 H 1.09007 * 109.47116 * 60.00200 * 1 2 3 27 27 H 1.09002 * 109.47594 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47200 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47546 * 299.99967 * 3 2 1 30 30 H 1.08999 * 109.47039 * 59.99867 * 3 2 1 31 31 H 1.08994 * 109.47025 * 300.00085 * 4 2 1 32 32 H 1.08998 * 109.46973 * 60.00519 * 4 2 1 33 33 H 1.08996 * 109.46924 * 179.97438 * 4 2 1 34 34 H 1.08999 * 109.46969 * 299.99972 * 5 2 1 35 35 H 1.08998 * 109.47382 * 180.02562 * 5 2 1 36 36 H 1.09001 * 117.49961 * 145.02657 * 8 6 5 37 37 H 1.09002 * 117.49739 * 0.02562 * 8 6 5 38 38 H 0.96992 * 120.00581 * 33.61689 * 11 9 8 39 39 H 1.09000 * 109.47615 * 59.99959 * 15 12 11 40 40 H 1.09007 * 109.47380 * 299.99639 * 15 12 11 41 41 H 1.09000 * 109.47211 * 59.99329 * 16 15 12 42 42 H 1.09007 * 109.46376 * 299.99872 * 16 15 12 43 43 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 1 1.3624 -2.6031 0.2658 8 6 0.5858 -2.5798 2.3790 9 6 2.0283 -3.0893 2.3609 10 1 2.7196 -2.6706 3.0923 11 7 2.2438 -4.4983 2.0222 12 16 3.4848 -5.3387 2.7265 13 8 4.6259 -4.5175 2.5198 14 8 3.4012 -6.6351 2.1507 15 6 3.0515 -5.3950 4.4871 16 6 4.1351 -6.1547 5.2549 17 6 3.7749 -6.2020 6.7175 18 1 2.8643 -5.7364 7.0646 19 6 4.6108 -6.8343 7.6132 20 7 5.7197 -7.4011 7.1905 21 14 4.1681 -6.8862 9.4272 22 1 3.3599 -8.1007 9.7051 23 1 5.4109 -6.9224 10.2393 24 1 3.3815 -5.6770 9.7797 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2495 34 1 1.6766 -0.2075 2.1392 35 1 3.1299 -0.7209 1.2495 36 1 -0.2029 -3.2928 2.1389 37 1 0.3275 -1.8256 3.1223 38 1 1.6596 -4.9389 1.3855 39 1 2.0949 -5.9029 4.6099 40 1 2.9761 -4.3792 4.8754 41 1 5.0915 -5.6465 5.1321 42 1 4.2109 -7.1705 4.8667 43 1 6.3079 -7.8456 7.8207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593628087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:46 Heat of formation + Delta-G solvation = -83.022038 kcal Electronic energy + Delta-G solvation = -21269.369985 eV Core-core repulsion = 18055.369349 eV Total energy + Delta-G solvation = -3214.000637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.14978 -36.75096 -36.46749 -35.43485 -33.89181 -32.21958 -31.16053 -27.60885 -27.47540 -27.30140 -25.59961 -22.17020 -21.70674 -21.11538 -19.24875 -18.66356 -17.45017 -16.70797 -16.38314 -15.39330 -15.11180 -14.81507 -14.74250 -14.55115 -14.46957 -13.55661 -13.49635 -13.33505 -12.60565 -12.51272 -12.48837 -12.06799 -11.94797 -11.88229 -11.74851 -11.72676 -11.63237 -11.56899 -11.49188 -11.08320 -10.96175 -10.95163 -10.85026 -10.65316 -10.40371 -10.38042 -10.02286 -9.73588 -9.27152 -8.77627 -8.50487 -6.12576 -4.18202 0.77875 3.07807 3.25966 3.32215 3.34898 3.70082 4.23338 4.36879 4.39644 4.54856 4.62739 4.71602 4.81358 4.89559 4.92633 5.07508 5.20156 5.22652 5.36159 5.40729 5.43072 5.57700 5.62534 5.65681 5.67528 5.69734 5.73096 5.77727 5.82984 5.89048 6.04530 6.11350 6.17024 6.18362 6.30071 6.49134 7.05888 7.30146 7.36223 7.80470 8.17435 8.85302 9.46608 10.98490 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003284 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.873540 B = 8524.592007 C = 9022.021255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.145 4.145 5 C -0.082 4.082 6 C -0.156 4.156 7 H 0.111 0.889 8 C -0.187 4.187 9 C 0.091 3.909 10 H 0.135 0.865 11 N -1.097 6.097 12 S 2.593 3.407 13 O -0.964 6.964 14 O -0.967 6.967 15 C -0.588 4.588 16 C 0.027 3.973 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.412 0.588 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 14.914 -13.605 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.202 4.202 5 C -0.120 4.120 6 C -0.177 4.177 7 H 0.128 0.872 8 C -0.227 4.227 9 C -0.018 4.018 10 H 0.153 0.847 11 N -0.850 5.850 12 S 2.691 3.309 13 O -0.954 6.954 14 O -0.958 6.958 15 C -0.721 4.721 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.245 0.755 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.408 14.536 -13.920 22.658 hybrid contribution -0.968 -0.139 1.216 1.561 sum -11.377 14.397 -12.704 22.318 Atomic orbital electron populations 1.21867 0.94573 1.01973 1.01230 1.20513 0.95708 0.95175 0.95324 1.21875 1.01117 0.95404 1.01556 1.21950 1.01240 1.00357 0.96640 1.21285 1.00863 0.92328 0.97476 1.22919 1.03547 0.95978 0.95254 0.87157 1.23607 0.93732 1.03727 1.01591 1.21426 0.97784 0.81260 1.01312 0.84723 1.55438 1.52186 1.18649 1.58709 1.05579 0.73617 0.73252 0.78447 1.93551 1.47929 1.68658 1.85249 1.93555 1.86006 1.39573 1.76653 1.30453 1.11309 1.10179 1.20170 1.18974 0.91145 0.95033 0.96029 1.21006 1.07457 1.36386 0.91133 0.92026 1.25069 0.94886 0.95135 0.99410 1.69953 1.11877 1.35844 1.35187 0.86467 0.77951 0.78524 0.84318 1.20477 1.21009 1.19753 0.92809 0.93215 0.92279 0.92576 0.92835 0.92698 0.92311 0.93012 0.92506 0.91474 0.91018 0.88510 0.88037 0.75522 0.86065 0.86293 0.94790 0.94845 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.23 37.16 0.31 -0.68 16 2 C -0.07 -0.52 0.80 -154.51 -0.12 -0.64 16 3 C -0.14 -1.01 8.47 37.15 0.31 -0.70 16 4 C -0.14 -1.15 8.23 37.16 0.31 -0.84 16 5 C -0.08 -0.71 4.55 -26.73 -0.12 -0.83 16 6 C -0.16 -1.47 4.18 -90.62 -0.38 -1.85 16 7 H 0.11 1.01 6.06 -51.93 -0.31 0.70 16 8 C -0.19 -1.66 10.10 -26.73 -0.27 -1.93 16 9 C 0.09 1.03 6.06 -67.93 -0.41 0.62 16 10 H 0.14 1.54 8.11 -51.93 -0.42 1.12 16 11 N -1.10 -14.15 5.93 -4.89 -0.03 -14.18 16 12 S 2.59 46.06 5.44 -107.50 -0.58 45.47 16 13 O -0.96 -19.98 17.82 -57.54 -1.03 -21.01 16 14 O -0.97 -20.09 18.08 -57.54 -1.04 -21.13 16 15 C -0.59 -11.13 6.01 37.16 0.22 -10.91 16 16 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 17 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 21 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 7.20 -51.93 -0.37 0.06 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.47 6.14 -51.93 -0.32 0.16 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 38 H 0.41 4.47 8.92 -34.47 -0.31 4.16 16 39 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 40 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -34.14 361.83 -9.82 -43.95 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.60 Total: 1.40 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -0.71 Total: -30.35 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.71 Total: -39.95 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -2.07 Total: -42.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.06 SS G_CDS: -0.58 Total: 45.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.14 -9.82 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593628087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.069 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds