Wall clock time and date at job start Tue Mar 31 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46915 * 2 1 4 4 C 1.52996 * 109.47053 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47168 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.47218 * 179.97438 * 5 4 3 7 7 O 1.42101 * 110.54272 * 291.62572 * 6 5 4 8 8 O 1.42102 * 110.54259 * 68.37729 * 6 5 4 9 9 N 1.65600 * 104.45301 * 179.97438 * 6 5 4 10 10 C 1.46932 * 120.62844 * 89.99810 * 9 6 5 11 11 C 1.53191 * 108.77379 * 126.37280 * 10 9 6 12 12 C 1.53043 * 109.31240 * 54.63486 * 11 10 9 13 13 C 1.53035 * 109.53712 * 298.63338 * 12 11 10 14 14 H 1.08997 * 109.49964 * 301.41566 * 13 12 11 15 15 C 1.50704 * 109.49867 * 181.34765 * 13 12 11 16 16 H 1.07998 * 120.00556 * 240.00340 * 15 13 12 17 17 C 1.37880 * 119.99770 * 60.00077 * 15 13 12 18 18 N 1.31514 * 119.99967 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00197 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47184 * 120.00123 * 19 17 15 22 22 H 1.48499 * 109.47364 * 240.00133 * 19 17 15 23 23 C 1.46928 * 120.63345 * 269.72363 * 9 6 5 24 24 H 1.09007 * 109.46719 * 299.99894 * 1 2 3 25 25 H 1.08998 * 109.47137 * 60.00242 * 1 2 3 26 26 H 1.08995 * 109.47046 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46962 * 240.00022 * 2 1 3 28 28 H 1.08998 * 109.47137 * 119.99758 * 2 1 3 29 29 H 1.08994 * 109.47287 * 60.00222 * 3 2 1 30 30 H 1.09007 * 109.47039 * 299.99621 * 3 2 1 31 31 H 1.09004 * 109.47556 * 59.99435 * 4 3 2 32 32 H 1.09001 * 109.47255 * 299.99614 * 4 3 2 33 33 H 1.09001 * 109.47469 * 59.99836 * 5 4 3 34 34 H 1.08998 * 109.47079 * 299.99561 * 5 4 3 35 35 H 1.08999 * 109.58666 * 246.15902 * 10 9 6 36 36 H 1.08996 * 109.58622 * 6.44400 * 10 9 6 37 37 H 1.08994 * 109.49794 * 174.58567 * 11 10 9 38 38 H 1.09002 * 109.49593 * 294.65019 * 11 10 9 39 39 H 1.08996 * 109.45968 * 58.65644 * 12 11 10 40 40 H 1.09003 * 109.45941 * 178.63060 * 12 11 10 41 41 H 0.97003 * 120.00366 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.58338 * 353.41728 * 23 9 6 43 43 H 1.09000 * 109.58446 * 113.83853 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 -0.0013 6 16 5.8939 2.8851 -0.0013 7 8 6.3926 2.3953 1.2359 8 8 6.3926 2.3942 -1.2381 9 7 6.3072 4.4887 -0.0027 10 6 6.4940 5.2148 1.2610 11 6 7.8723 5.8833 1.2464 12 6 7.9983 6.7560 -0.0045 13 6 7.8727 5.8810 -1.2537 14 1 8.6483 5.1153 -1.2411 15 6 8.0300 6.7361 -2.4846 16 1 7.2291 6.7958 -3.2067 17 6 9.1965 7.4423 -2.6890 18 7 10.1720 7.3692 -1.8100 19 14 9.3913 8.5028 -4.2143 20 1 8.1593 8.4152 -5.0387 21 1 9.6169 9.9140 -3.8106 22 1 10.5524 8.0228 -5.0060 23 6 6.4999 5.2111 -1.2676 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9331 0.9288 -0.8908 32 1 3.9337 0.9287 0.8891 33 1 3.7170 3.3992 0.8887 34 1 3.7163 3.3986 -0.8913 35 1 5.7200 5.9754 1.3632 36 1 6.4329 4.5167 2.0959 37 1 7.9852 6.5035 2.1356 38 1 8.6479 5.1175 1.2361 39 1 7.2073 7.5059 -0.0053 40 1 8.9690 7.2519 -0.0049 41 1 10.9928 7.8658 -1.9538 42 1 6.4452 4.5102 -2.1005 43 1 5.7264 5.9714 -1.3757 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:41 Heat of formation + Delta-G solvation = -104.009442 kcal Electronic energy + Delta-G solvation = -21870.417756 eV Core-core repulsion = 18655.507037 eV Total energy + Delta-G solvation = -3214.910719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.69361 -36.84495 -36.53656 -35.60457 -33.29279 -32.52921 -31.08288 -30.08181 -27.21962 -25.09969 -23.67192 -22.51509 -21.66041 -21.33681 -19.47262 -18.23113 -17.26822 -16.36712 -16.30157 -15.99345 -15.52683 -14.65136 -14.34468 -14.09240 -13.82923 -13.74177 -13.39536 -13.19819 -12.78688 -12.62157 -12.50734 -12.24477 -12.14451 -11.79491 -11.73811 -11.69160 -11.33466 -11.31045 -11.24924 -10.97504 -10.83122 -10.81905 -10.67636 -10.33564 -10.18191 -9.91848 -9.76396 -9.33623 -8.80083 -8.42040 -8.13270 -5.99077 -4.06542 0.50533 2.99225 3.29842 3.38155 3.41498 4.06650 4.29694 4.40276 4.44136 4.62536 4.65752 4.87606 4.92337 5.18914 5.22421 5.25835 5.31303 5.44915 5.52390 5.58736 5.60360 5.71602 5.73672 5.81626 5.84530 5.97563 6.04769 6.04880 6.25140 6.36114 6.50312 6.66143 6.66812 6.92050 7.05511 7.25808 7.47537 7.73130 7.99392 8.12339 8.41323 8.97246 9.58073 11.06432 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025995 B = 0.003758 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.884388 B = 7448.993160 C = 8003.809473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.112 4.112 4 C -0.113 4.113 5 C -0.636 4.636 6 S 2.603 3.397 7 O -0.964 6.964 8 O -0.952 6.952 9 N -0.994 5.994 10 C 0.123 3.877 11 C -0.131 4.131 12 C -0.110 4.110 13 C 0.041 3.959 14 H 0.032 0.968 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.123 3.877 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.034 0.966 40 H 0.094 0.906 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.875 -8.986 6.213 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.151 4.151 4 C -0.152 4.152 5 C -0.764 4.764 6 S 2.696 3.304 7 O -0.954 6.954 8 O -0.942 6.942 9 N -0.833 5.833 10 C -0.003 4.003 11 C -0.170 4.170 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.050 0.950 15 C -0.553 4.553 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C 0.000 4.000 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.118 -9.643 6.242 18.987 hybrid contribution -0.468 1.102 -0.786 1.432 sum -15.585 -8.540 5.457 18.591 Atomic orbital electron populations 1.21774 0.95783 1.01609 1.01848 1.21589 0.95988 0.96796 1.02385 1.21580 0.93788 0.97053 1.02631 1.21335 0.97893 0.92449 1.03508 1.30782 1.29100 1.05163 1.11371 1.05153 0.77354 0.73619 0.74236 1.93546 1.77343 1.79011 1.45496 1.93593 1.76968 1.78668 1.44974 1.57627 1.83125 1.29178 1.13344 1.21416 0.98819 0.95799 0.84253 1.21933 0.95428 0.99679 0.99928 1.21589 1.03310 0.97385 0.92524 1.18857 0.90479 0.94561 0.94025 0.95015 1.21130 1.01054 1.27428 1.05689 0.92415 1.24952 0.95798 0.96722 0.96442 1.69891 1.05651 1.42220 1.34868 0.86531 0.78107 0.80082 0.83206 1.19771 1.21121 1.21049 1.21747 1.01060 0.95297 0.81927 0.92757 0.92693 0.92755 0.91718 0.91791 0.91598 0.91492 0.90381 0.90517 0.85398 0.85109 0.92343 0.90374 0.92639 0.92254 0.94671 0.88740 0.93026 0.90249 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.11 -0.94 5.21 -26.73 -0.14 -1.08 16 4 C -0.11 -1.14 5.22 -26.74 -0.14 -1.28 16 5 C -0.64 -6.96 6.18 37.16 0.23 -6.73 16 6 S 2.60 41.73 5.45 -107.50 -0.59 41.14 16 7 O -0.96 -17.45 16.59 -57.54 -0.95 -18.41 16 8 O -0.95 -18.65 16.58 -57.54 -0.95 -19.60 16 9 N -0.99 -17.42 3.23 -113.76 -0.37 -17.79 16 10 C 0.12 1.99 6.43 -3.71 -0.02 1.97 16 11 C -0.13 -2.48 6.08 -26.61 -0.16 -2.64 16 12 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 13 C 0.04 1.01 2.24 -91.88 -0.21 0.80 16 14 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 15 C -0.51 -13.80 8.57 -34.44 -0.29 -14.09 16 16 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -25.14 11.31 55.43 0.63 -24.51 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.12 2.50 5.63 -3.93 -0.02 2.47 16 24 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.13 1.16 8.14 -51.92 -0.42 0.73 16 34 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.15 6.86 -51.93 -0.36 0.79 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.08 1.62 6.85 -51.93 -0.36 1.26 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.91 349.91 -10.51 -42.42 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.75 Total: -1.10 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -0.77 Total: -23.43 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.26 Total: -42.30 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.91 Total: -38.01 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 41.73 SS G_CDS: -0.59 Total: 41.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.91 -10.51 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.590 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds