Wall clock time and date at job start Tue Mar 31 2020 07:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46845 * 2 1 4 4 C 1.53000 * 109.47264 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47264 * 180.02562 * 4 3 2 6 6 S 1.81402 * 109.46941 * 180.02562 * 5 4 3 7 7 O 1.42099 * 110.54413 * 68.37146 * 6 5 4 8 8 O 1.42097 * 110.54144 * 291.61801 * 6 5 4 9 9 N 1.65606 * 104.44838 * 179.97438 * 6 5 4 10 10 C 1.46921 * 120.63136 * 89.99911 * 9 6 5 11 11 C 1.53192 * 108.77565 * 233.63306 * 10 9 6 12 12 C 1.53046 * 109.31128 * 305.36180 * 11 10 9 13 13 C 1.53046 * 109.53579 * 61.36447 * 12 11 10 14 14 H 1.09001 * 109.49519 * 58.58791 * 13 12 11 15 15 C 1.50695 * 109.49627 * 178.68180 * 13 12 11 16 16 H 1.08005 * 119.99644 * 119.99993 * 15 13 12 17 17 C 1.37876 * 120.00153 * 300.00294 * 15 13 12 18 18 N 1.31506 * 120.00112 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99765 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47512 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46828 * 120.00281 * 19 17 15 22 22 H 1.48496 * 109.47331 * 239.99927 * 19 17 15 23 23 C 1.46928 * 120.62928 * 270.02109 * 9 6 5 24 24 H 1.08999 * 109.46887 * 60.00933 * 1 2 3 25 25 H 1.09003 * 109.46539 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47297 * 300.00095 * 1 2 3 27 27 H 1.08994 * 109.47279 * 239.99418 * 2 1 3 28 28 H 1.09008 * 109.46619 * 119.99093 * 2 1 3 29 29 H 1.08999 * 109.47575 * 59.99167 * 3 2 1 30 30 H 1.09002 * 109.47028 * 299.99869 * 3 2 1 31 31 H 1.08999 * 109.47322 * 59.99236 * 4 3 2 32 32 H 1.09002 * 109.47174 * 300.00004 * 4 3 2 33 33 H 1.08994 * 109.47657 * 59.99874 * 5 4 3 34 34 H 1.08997 * 109.47111 * 299.99611 * 5 4 3 35 35 H 1.08996 * 109.58905 * 113.84360 * 10 9 6 36 36 H 1.09001 * 109.70481 * 353.48713 * 10 9 6 37 37 H 1.09002 * 109.49998 * 185.41388 * 11 10 9 38 38 H 1.08995 * 109.52901 * 65.32798 * 11 10 9 39 39 H 1.08993 * 109.45866 * 181.38621 * 12 11 10 40 40 H 1.09000 * 109.45949 * 301.34958 * 12 11 10 41 41 H 0.97002 * 120.00015 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58351 * 246.16001 * 23 9 6 43 43 H 1.09002 * 109.58642 * 6.43657 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 16 5.8939 2.8851 0.0013 7 8 6.3926 2.3952 -1.2359 8 8 6.3925 2.3944 1.2381 9 7 6.3071 4.4888 0.0013 10 6 6.4938 5.2137 1.2655 11 6 5.6102 6.4650 1.2515 12 6 5.9220 7.2910 0.0014 13 6 5.6098 6.4651 -1.2487 14 1 4.5607 6.1695 -1.2367 15 6 5.8865 7.2904 -2.4788 16 1 6.6170 6.9558 -3.2005 17 6 5.2073 8.4728 -2.6829 18 7 4.3182 8.8805 -1.8038 19 14 5.5509 9.4961 -4.2074 20 1 6.5866 8.8236 -5.0321 21 1 4.3030 9.6381 -4.9998 22 1 6.0356 10.8401 -3.8026 23 6 6.4934 5.2138 -1.2630 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8902 29 1 1.6765 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9338 0.9286 -0.8890 32 1 3.9330 0.9289 0.8909 33 1 3.7162 3.3987 0.8912 34 1 3.7170 3.3991 -0.8887 35 1 7.5389 5.5056 1.3684 36 1 6.2090 4.5746 2.1012 37 1 5.8106 7.0620 2.1413 38 1 4.5610 6.1700 1.2402 39 1 5.3122 8.1943 0.0016 40 1 6.9770 7.5652 0.0012 41 1 3.8401 9.7122 -1.9476 42 1 7.5385 5.5056 -1.3662 43 1 6.2090 4.5726 -2.0973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:44 Heat of formation + Delta-G solvation = -106.255644 kcal Electronic energy + Delta-G solvation = -22098.700809 eV Core-core repulsion = 18883.692688 eV Total energy + Delta-G solvation = -3215.008121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -37.73603 -36.86174 -36.42669 -35.65047 -33.33842 -32.42369 -31.11294 -30.12492 -27.11608 -25.14284 -23.68455 -22.45509 -21.68615 -21.23075 -19.40652 -18.31143 -17.33337 -16.31564 -16.16340 -16.09453 -15.52071 -14.70013 -14.24116 -13.99263 -13.86110 -13.64628 -13.39607 -13.20859 -12.82157 -12.71594 -12.37153 -12.19428 -12.14589 -11.82890 -11.72254 -11.66467 -11.28739 -11.22620 -11.15395 -11.02690 -10.87246 -10.72837 -10.71502 -10.38884 -10.26632 -9.97386 -9.78335 -9.38221 -8.87897 -8.47402 -8.15738 -6.06304 -4.13524 0.55469 2.98618 3.25846 3.34661 3.39089 4.05535 4.36357 4.40523 4.50532 4.70832 4.75859 4.96300 5.02951 5.19648 5.25299 5.30502 5.35121 5.55109 5.64015 5.67739 5.69422 5.72925 5.79441 5.85524 5.96818 5.99786 6.08854 6.16730 6.25460 6.30911 6.46851 6.59510 6.63798 6.85418 7.01002 7.17380 7.40192 7.66415 7.87320 8.04775 8.35261 8.90508 9.52048 10.98913 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.004630 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.888808 B = 6046.094686 C = 6896.827897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.113 4.113 4 C -0.111 4.111 5 C -0.633 4.633 6 S 2.606 3.394 7 O -0.959 6.959 8 O -0.968 6.968 9 N -0.994 5.994 10 C 0.126 3.874 11 C -0.136 4.136 12 C -0.110 4.110 13 C 0.038 3.962 14 H 0.028 0.972 15 C -0.516 4.516 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.126 3.874 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 -11.956 6.197 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.152 4.152 4 C -0.150 4.150 5 C -0.762 4.762 6 S 2.700 3.300 7 O -0.950 6.950 8 O -0.959 6.959 9 N -0.833 5.833 10 C 0.000 4.000 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.018 3.982 14 H 0.047 0.953 15 C -0.555 4.555 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.002 3.998 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.681 -12.535 6.224 14.471 hybrid contribution -0.581 1.179 -0.787 1.532 sum -4.262 -11.356 5.437 13.292 Atomic orbital electron populations 1.21776 0.95792 1.01505 1.01967 1.21582 0.96005 0.96846 1.02211 1.21585 0.93728 0.96948 1.02909 1.21326 0.98040 0.92435 1.03214 1.30733 1.28288 1.05081 1.12061 1.04999 0.77598 0.73381 0.73983 1.93569 1.77436 1.78861 1.45100 1.93541 1.77690 1.79097 1.45525 1.57634 1.83613 1.28696 1.13318 1.21378 1.00493 0.94177 0.83933 1.22030 0.98956 0.96288 1.00205 1.21579 1.00195 1.00685 0.92361 1.19007 0.94699 0.90352 0.94159 0.95344 1.21160 1.22707 1.05839 1.05749 0.92294 1.24933 0.94881 0.97512 0.96446 1.69876 1.25531 1.22485 1.34859 0.86543 0.78160 0.80161 0.83183 1.19680 1.21081 1.21056 1.21808 1.01251 0.95098 0.81611 0.92619 0.92841 0.92725 0.91803 0.91905 0.91516 0.91289 0.90515 0.90698 0.85194 0.84594 0.91641 0.90694 0.92576 0.92612 0.88767 0.94523 0.93038 0.92015 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.11 -1.13 5.21 -26.73 -0.14 -1.27 16 4 C -0.11 -1.25 5.22 -26.73 -0.14 -1.39 16 5 C -0.63 -8.08 6.18 37.16 0.23 -7.85 16 6 S 2.61 41.97 5.41 -107.50 -0.58 41.39 16 7 O -0.96 -18.16 16.72 -57.54 -0.96 -19.12 16 8 O -0.97 -17.08 16.73 -57.54 -0.96 -18.04 16 9 N -0.99 -17.40 3.22 -113.53 -0.37 -17.77 16 10 C 0.13 2.03 6.31 -3.71 -0.02 2.01 16 11 C -0.14 -2.36 6.08 -26.61 -0.16 -2.52 16 12 C -0.11 -2.40 4.96 -26.68 -0.13 -2.53 16 13 C 0.04 0.87 2.25 -91.65 -0.21 0.66 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.52 -13.39 8.56 -34.44 -0.29 -13.68 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.10 11.31 55.43 0.63 -23.47 16 19 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 2.54 5.54 -3.71 -0.02 2.52 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.14 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.50 7.09 -51.93 -0.37 1.14 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -30.16 350.42 -10.54 -40.70 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.78 Total: 0.10 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -0.77 Total: -24.58 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.26 Total: -41.24 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -1.92 Total: -37.16 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 41.97 SS G_CDS: -0.58 Total: 41.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.16 -10.54 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.560 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds