Wall clock time and date at job start Tue Mar 31 2020 06:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47317 * 2 1 4 4 C 1.52999 * 109.47138 * 120.00060 * 2 1 3 5 5 C 1.53004 * 109.47278 * 171.84222 * 4 2 1 6 6 N 1.46499 * 115.54866 * 285.35279 * 5 4 2 7 7 S 1.65602 * 120.00176 * 42.20479 * 6 5 4 8 8 O 1.42108 * 104.27847 * 302.47064 * 7 6 5 9 9 O 1.42102 * 104.27744 * 174.61534 * 7 6 5 10 10 C 1.81394 * 104.44777 * 58.54043 * 7 6 5 11 11 C 1.53004 * 109.47048 * 186.89329 * 10 7 6 12 12 C 1.52994 * 109.47083 * 175.12032 * 11 10 7 13 13 C 1.50701 * 109.47199 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99925 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00214 * 180.02562 * 13 12 11 16 16 N 1.31508 * 119.99666 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99847 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47316 * 90.00341 * 17 15 13 19 19 H 1.48504 * 109.46728 * 209.99905 * 17 15 13 20 20 H 1.48501 * 109.47409 * 329.99627 * 17 15 13 21 21 C 1.52994 * 117.49794 * 71.01655 * 5 4 2 22 22 C 1.52998 * 117.50191 * 139.68104 * 5 4 2 23 23 H 1.09007 * 109.46968 * 299.99907 * 1 2 3 24 24 H 1.08996 * 109.47329 * 60.00454 * 1 2 3 25 25 H 1.08998 * 109.46945 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47157 * 239.99574 * 2 1 3 27 27 H 1.08999 * 109.47452 * 192.09714 * 3 2 1 28 28 H 1.09007 * 109.47060 * 312.09309 * 3 2 1 29 29 H 1.08996 * 109.47373 * 72.09441 * 3 2 1 30 30 H 1.09004 * 109.47459 * 51.84128 * 4 2 1 31 31 H 1.09008 * 109.46927 * 291.84113 * 4 2 1 32 32 H 0.96999 * 120.00226 * 222.21239 * 6 5 4 33 33 H 1.08998 * 109.46817 * 66.89672 * 10 7 6 34 34 H 1.09000 * 109.47701 * 306.89506 * 10 7 6 35 35 H 1.09000 * 109.47400 * 295.12567 * 11 10 7 36 36 H 1.09005 * 109.46834 * 55.12411 * 11 10 7 37 37 H 1.09000 * 109.47439 * 300.00510 * 12 11 10 38 38 H 1.09005 * 109.46976 * 60.00466 * 12 11 10 39 39 H 0.97003 * 120.00191 * 180.02562 * 16 15 13 40 40 H 1.08998 * 117.50130 * 215.00305 * 21 5 4 41 41 H 1.09000 * 117.50288 * 0.03158 * 21 5 4 42 42 H 1.09000 * 117.49782 * 359.97438 * 22 5 4 43 43 H 1.08992 * 117.50252 * 144.97203 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5563 -0.9010 1.1511 6 7 4.0108 -1.9375 0.2210 7 16 3.2896 -2.0938 -1.2615 8 8 1.9167 -2.3067 -0.9627 9 8 4.0585 -3.0896 -1.9221 10 6 3.5258 -0.4784 -2.0522 11 6 2.7502 -0.4376 -3.3705 12 6 2.8495 0.9633 -3.9774 13 6 2.0850 1.0038 -5.2755 14 1 1.5794 0.1187 -5.6321 15 6 2.0320 2.1705 -6.0084 16 7 2.6490 3.2479 -5.5748 17 14 1.0851 2.2203 -7.6177 18 1 -0.3215 2.6157 -7.3524 19 1 1.7131 3.2085 -8.5311 20 1 1.1109 0.8765 -8.2491 21 6 4.4266 0.3489 1.2961 22 6 4.3772 -0.6848 2.4240 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 3.1085 1.4501 -0.2154 28 1 1.5117 2.0146 -0.7626 29 1 1.8633 1.8903 0.9778 30 1 1.5625 -1.6982 1.3252 31 1 1.8006 -0.1301 2.1332 32 1 4.7341 -2.5324 0.4735 33 1 4.5863 -0.3222 -2.2497 34 1 3.1598 0.3070 -1.3909 35 1 3.1732 -1.1647 -4.0637 36 1 1.7038 -0.6794 -3.1840 37 1 2.4265 1.6905 -3.2842 38 1 3.8958 1.2052 -4.1639 39 1 2.6115 4.0688 -6.0901 40 1 5.3374 0.4000 0.6995 41 1 3.9191 1.2992 1.4619 42 1 3.8371 -0.4142 3.3313 43 1 5.2551 -1.3141 2.5696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595366746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:55 Heat of formation + Delta-G solvation = -46.832130 kcal Electronic energy + Delta-G solvation = -22972.378383 eV Core-core repulsion = 19759.947058 eV Total energy + Delta-G solvation = -3212.431324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -39.49621 -37.00334 -35.86923 -35.29801 -34.25421 -32.21588 -32.15676 -28.03310 -27.50195 -26.92759 -23.76809 -22.57422 -21.11819 -20.53586 -20.27573 -18.93781 -17.50600 -16.62504 -16.35584 -15.98905 -15.61767 -14.82295 -14.69328 -14.47308 -14.11557 -13.79005 -13.36548 -12.75411 -12.55104 -12.29739 -12.15809 -12.12900 -11.96095 -11.85486 -11.68523 -11.57893 -11.48553 -11.43588 -11.23309 -11.04219 -10.88854 -10.80854 -10.57119 -10.34482 -9.98939 -9.92480 -9.86063 -9.46258 -9.22512 -8.99570 -8.39446 -6.04731 -4.07310 0.48381 2.78401 3.30738 3.37010 3.41065 3.49854 3.91941 4.39367 4.42755 4.43391 4.62046 4.71067 4.84023 5.08241 5.19068 5.22445 5.26245 5.32037 5.41639 5.42776 5.64552 5.73707 5.81829 5.84904 5.91003 5.92576 6.08784 6.10124 6.14888 6.22552 6.29620 6.42849 6.50573 6.54680 6.61290 6.89142 6.93011 7.59262 7.69525 7.93681 8.34499 8.98823 9.57216 11.06422 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.004937 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.088156 B = 5670.607925 C = 6050.722257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C -0.169 4.169 4 C -0.091 4.091 5 C 0.103 3.897 6 N -1.090 6.090 7 S 2.596 3.404 8 O -0.949 6.949 9 O -0.971 6.971 10 C -0.634 4.634 11 C -0.102 4.102 12 C 0.033 3.967 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.194 4.194 22 C -0.167 4.167 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 -5.664 17.411 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C -0.226 4.226 4 C -0.130 4.130 5 C 0.013 3.987 6 N -0.845 5.845 7 S 2.694 3.306 8 O -0.938 6.938 9 O -0.962 6.962 10 C -0.766 4.766 11 C -0.142 4.142 12 C -0.005 4.005 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.233 4.233 22 C -0.206 4.206 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.248 0.752 33 H 0.145 0.855 34 H 0.171 0.829 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.842 -6.211 16.998 18.191 hybrid contribution 0.318 0.521 -0.744 0.963 sum 2.160 -5.689 16.254 17.356 Atomic orbital electron populations 1.21681 0.94222 1.02206 1.01319 1.21830 0.97859 0.95617 0.98398 1.22310 1.01703 0.96431 1.02158 1.21593 0.89701 1.02721 0.98935 1.20566 0.92892 0.90527 0.94687 1.55190 1.52378 1.44464 1.32460 1.05521 0.74527 0.77421 0.73180 1.93603 1.33290 1.84445 1.82481 1.93549 1.71769 1.56785 1.74082 1.31047 1.11027 1.22406 1.12085 1.21483 0.97894 1.04122 0.90665 1.19038 0.97556 0.88610 0.95322 1.21251 1.32321 0.96805 1.05935 0.92449 1.24996 0.95603 0.95665 0.97999 1.69953 1.43157 1.01324 1.38957 0.86587 0.80032 0.77925 0.83457 1.20575 1.21208 1.19775 1.23806 1.02559 0.94818 1.02088 1.23294 1.01908 1.02819 0.92590 0.93469 0.92229 0.91951 0.90236 0.91589 0.91413 0.92477 0.89287 0.90231 0.75206 0.85509 0.82894 0.91896 0.91509 0.95964 0.96233 0.92948 0.88071 0.86957 0.87866 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.15 37.16 0.34 -1.50 16 2 C -0.12 -1.60 1.47 -90.62 -0.13 -1.73 16 3 C -0.17 -2.13 6.77 37.15 0.25 -1.88 16 4 C -0.09 -1.03 4.07 -26.73 -0.11 -1.14 16 5 C 0.10 1.08 2.10 -131.82 -0.28 0.81 16 6 N -1.09 -12.67 5.93 0.53 0.00 -12.67 16 7 S 2.60 40.04 4.94 -107.50 -0.53 39.51 16 8 O -0.95 -16.20 13.60 -57.54 -0.78 -16.98 16 9 O -0.97 -17.87 18.08 -57.54 -1.04 -18.91 16 10 C -0.63 -10.22 4.84 37.16 0.18 -10.04 16 11 C -0.10 -2.08 5.07 -26.73 -0.14 -2.21 16 12 C 0.03 0.83 4.97 -27.89 -0.14 0.69 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.19 -1.76 8.27 -26.69 -0.22 -1.98 16 22 C -0.17 -1.33 10.08 -26.69 -0.27 -1.60 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.22 1.58 -32.17 -0.05 1.17 16 27 H 0.07 0.80 4.26 -51.93 -0.22 0.58 16 28 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 29 H 0.06 0.58 7.81 -51.93 -0.41 0.18 16 30 H 0.09 1.10 7.45 -51.93 -0.39 0.71 16 31 H 0.08 0.72 7.91 -51.92 -0.41 0.31 16 32 H 0.41 3.98 8.88 -34.47 -0.31 3.67 16 33 H 0.13 1.84 8.14 -51.92 -0.42 1.42 16 34 H 0.15 2.30 2.69 -51.92 -0.14 2.16 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.33 7.99 -51.93 -0.41 0.91 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.11 0.95 6.19 -51.93 -0.32 0.63 16 42 H 0.10 0.68 8.13 -51.93 -0.42 0.26 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -33.06 338.36 -9.30 -42.36 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.85 Total: 4.66 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: -0.92 Total: -33.98 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.74 Total: -38.23 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.82 Total: -35.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 40.04 SS G_CDS: -0.53 Total: 39.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.06 -9.30 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595366746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.468 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds