Wall clock time and date at job start Tue Mar 31 2020 07:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50706 * 119.99631 * 2 1 4 4 C 1.52998 * 109.47331 * 124.99683 * 3 2 1 5 5 H 1.09000 * 109.47297 * 305.00289 * 4 3 2 6 6 C 1.52997 * 109.46808 * 64.99976 * 4 3 2 7 7 O 1.42907 * 109.47057 * 185.00206 * 6 4 3 8 8 C 1.53000 * 109.47254 * 185.00111 * 4 3 2 9 9 N 1.46497 * 109.47087 * 175.00069 * 8 4 3 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 4 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39228 * 120.28202 * 357.28098 * 12 10 9 14 14 C 1.38226 * 120.09517 * 180.28371 * 13 12 10 15 15 C 1.38826 * 120.67249 * 359.71003 * 14 13 12 16 16 C 1.37600 * 120.56886 * 0.02562 * 15 14 13 17 17 C 1.40699 * 119.88579 * 359.97438 * 16 15 14 18 18 C 1.40892 * 120.33217 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00258 * 145.90796 * 18 17 16 20 20 C 1.40270 * 119.99667 * 325.91291 * 18 17 16 21 21 N 1.30631 * 120.00176 * 341.06130 * 20 18 17 22 22 Si 1.86798 * 120.00117 * 161.06637 * 20 18 17 23 23 H 1.48497 * 109.47432 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47087 * 299.99760 * 22 20 18 25 25 H 1.48503 * 109.47399 * 59.99519 * 22 20 18 26 26 H 1.07994 * 119.99963 * 0.02562 * 1 2 3 27 27 H 1.07996 * 119.99522 * 180.02562 * 1 2 3 28 28 H 1.07993 * 120.00674 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46796 * 4.99815 * 3 2 1 30 30 H 1.08999 * 109.46906 * 244.99835 * 3 2 1 31 31 H 1.09000 * 109.47269 * 304.99610 * 6 4 3 32 32 H 1.08994 * 109.47711 * 65.00177 * 6 4 3 33 33 H 0.96706 * 114.00018 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47147 * 54.99924 * 8 4 3 35 35 H 1.09003 * 109.46728 * 294.99713 * 8 4 3 36 36 H 0.97004 * 120.00040 * 0.02562 * 9 8 4 37 37 H 1.08009 * 119.95376 * 359.97438 * 13 12 10 38 38 H 1.07994 * 119.66255 * 179.74195 * 14 13 12 39 39 H 1.07994 * 119.71701 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.05465 * 180.02562 * 16 15 14 41 41 H 0.96993 * 119.99954 * 354.74352 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 1 2.4883 1.1471 2.1060 6 6 4.0999 0.2512 0.9921 7 8 4.9373 0.1993 2.1489 8 6 3.7090 2.7049 1.2552 9 7 4.5482 2.7729 2.4541 10 6 5.2436 3.8946 2.7272 11 8 5.1748 4.8502 1.9781 12 6 6.0886 3.9629 3.9334 13 6 6.1287 2.8934 4.8240 14 6 6.9177 2.9639 5.9567 15 6 7.6820 4.0930 6.2182 16 6 7.6673 5.1636 5.3540 17 6 6.8726 5.1172 4.1938 18 6 6.8509 6.2078 3.3021 19 1 6.7431 6.0361 2.2414 20 6 6.9695 7.5168 3.7922 21 7 6.7309 7.7667 5.0520 22 14 7.4684 8.9026 2.6433 23 1 7.5208 10.1789 3.4007 24 1 8.8067 8.6120 2.0691 25 1 6.4739 9.0188 1.5466 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9352 0.0004 29 1 1.3585 2.1316 0.0895 30 1 2.6213 1.4027 -0.9314 31 1 3.6152 -0.7148 0.8509 32 1 4.7045 0.4858 0.1162 33 1 5.6368 -0.4666 2.0986 34 1 2.9465 3.4824 1.3009 35 1 4.3273 2.8538 0.3700 36 1 4.6039 2.0103 3.0510 37 1 5.5385 2.0094 4.6321 38 1 6.9403 2.1320 6.6449 39 1 8.2933 4.1314 7.1077 40 1 8.2654 6.0377 5.5654 41 1 6.3984 7.0635 5.6314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601406489.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:45 Heat of formation + Delta-G solvation = -63.081741 kcal Electronic energy + Delta-G solvation = -22722.007168 eV Core-core repulsion = 19373.427256 eV Total energy + Delta-G solvation = -3348.579912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.14830 -38.01808 -36.69425 -35.62152 -34.09849 -33.57018 -31.45991 -29.82341 -29.21219 -26.06480 -25.88205 -24.81881 -22.17705 -21.04239 -20.58171 -19.91248 -19.13496 -17.97370 -17.47796 -16.42709 -15.85580 -15.22392 -15.03352 -14.67709 -14.37501 -14.07493 -13.85720 -13.69655 -13.45430 -13.24502 -12.89266 -12.52794 -12.31549 -12.10699 -11.88160 -11.66669 -11.52712 -11.07242 -10.98653 -10.82848 -10.68316 -10.64826 -10.31871 -10.07040 -9.98639 -9.62185 -9.49921 -9.00644 -8.36853 -8.16608 -7.68671 -7.51463 -7.05908 -4.37572 2.01943 2.35165 2.82022 3.24487 3.36315 3.45333 3.90332 4.10233 4.19494 4.22334 4.60574 4.73124 4.74385 4.94264 5.08334 5.13279 5.34793 5.39116 5.51543 5.55682 5.64543 5.71008 5.81978 6.00157 6.05247 6.16057 6.21499 6.30717 6.36571 6.51277 6.63642 6.81720 7.08570 7.34678 7.38577 7.56820 7.59405 7.71068 7.81884 7.98225 8.20293 8.31027 8.62100 8.83923 8.95722 9.53591 10.12184 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.004226 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.736113 B = 6623.362956 C = 7765.547615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.096 4.096 5 H 0.084 0.916 6 C 0.082 3.918 7 O -0.568 6.568 8 C 0.134 3.866 9 N -0.737 5.737 10 C 0.561 3.439 11 O -0.546 6.546 12 C -0.262 4.262 13 C -0.040 4.040 14 C -0.262 4.262 15 C -0.076 4.076 16 C -0.204 4.204 17 C 0.121 3.879 18 C -0.469 4.469 19 H 0.105 0.895 20 C 0.031 3.969 21 N -0.797 5.797 22 Si 1.071 2.929 23 H -0.275 1.275 24 H -0.275 1.275 25 H -0.273 1.273 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.379 0.621 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.402 0.598 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -13.815 -7.379 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.123 4.123 4 C -0.115 4.115 5 H 0.102 0.898 6 C 0.004 3.996 7 O -0.373 6.373 8 C 0.009 3.991 9 N -0.394 5.394 10 C 0.354 3.646 11 O -0.425 6.425 12 C -0.267 4.267 13 C -0.059 4.059 14 C -0.281 4.281 15 C -0.095 4.095 16 C -0.223 4.223 17 C 0.117 3.883 18 C -0.496 4.496 19 H 0.123 0.877 20 C -0.190 4.190 21 N -0.421 5.421 22 Si 0.894 3.106 23 H -0.200 1.200 24 H -0.200 1.200 25 H -0.199 1.199 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.241 0.759 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.815 -11.003 -7.728 15.074 hybrid contribution -0.057 -2.745 0.293 2.761 sum -6.872 -13.748 -7.435 17.073 Atomic orbital electron populations 1.23876 0.95968 1.01897 1.01326 1.22972 0.96046 0.98396 0.99748 1.20680 0.97751 0.95899 0.98008 1.21396 0.95463 0.94933 0.99739 0.89784 1.22259 0.91710 0.97544 0.88054 1.86366 1.47483 1.62396 1.41096 1.21064 0.93812 0.94718 0.89503 1.46046 1.49129 1.17709 1.26555 1.18385 0.78991 0.81411 0.85802 1.90657 1.65320 1.36074 1.50475 1.19444 1.07655 1.00026 0.99527 1.20775 0.95917 0.95599 0.93652 1.20241 1.07682 0.99454 1.00749 1.20731 0.97516 0.93887 0.97355 1.21233 1.03604 0.99031 0.98475 1.17515 0.87908 0.91963 0.90927 1.21171 1.38709 0.91557 0.98158 0.87722 1.27247 0.92523 1.01485 0.97784 1.70380 1.26584 1.39299 1.05837 0.83556 0.77658 0.74380 0.74977 1.20012 1.20026 1.19862 0.88454 0.88597 0.87386 0.90371 0.90395 0.93680 0.93551 0.77286 0.92363 0.92531 0.75908 0.88781 0.89012 0.89004 0.87607 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.32 29.01 0.42 -1.10 16 2 C -0.15 -1.26 9.03 -36.02 -0.33 -1.59 16 3 C -0.09 -0.79 5.13 -27.88 -0.14 -0.93 16 4 C -0.10 -1.10 2.28 -90.62 -0.21 -1.31 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 6 C 0.08 0.83 6.32 37.16 0.23 1.06 16 7 O -0.57 -6.53 10.88 -35.23 -0.38 -6.91 16 8 C 0.13 2.12 5.06 -4.04 -0.02 2.10 16 9 N -0.74 -14.10 4.95 -61.38 -0.30 -14.41 16 10 C 0.56 13.73 7.73 -12.52 -0.10 13.63 16 11 O -0.55 -15.07 13.55 5.26 0.07 -15.00 16 12 C -0.26 -6.67 5.92 -104.37 -0.62 -7.29 16 13 C -0.04 -0.90 9.53 -39.22 -0.37 -1.28 16 14 C -0.26 -5.71 10.03 -39.37 -0.39 -6.11 16 15 C -0.08 -1.74 10.01 -39.60 -0.40 -2.14 16 16 C -0.20 -5.26 7.86 -38.89 -0.31 -5.57 16 17 C 0.12 3.35 5.18 -106.54 -0.55 2.79 16 18 C -0.47 -13.33 7.67 -37.81 -0.29 -13.62 16 19 H 0.11 3.11 5.90 -52.49 -0.31 2.80 16 20 C 0.03 0.82 5.05 -17.30 -0.09 0.74 16 21 N -0.80 -21.97 12.56 55.56 0.70 -21.27 16 22 Si 1.07 23.17 29.98 -169.99 -5.10 18.07 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 27 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16 28 H 0.11 0.78 6.86 -52.49 -0.36 0.42 16 29 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.36 6.54 -51.93 -0.34 0.02 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 2.83 9.12 45.56 0.42 3.24 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.40 7.11 4.32 -40.82 -0.18 6.94 16 37 H 0.09 1.81 6.41 -52.48 -0.34 1.48 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.11 2.77 6.92 -52.49 -0.36 2.41 16 41 H 0.30 8.40 6.52 -40.82 -0.27 8.14 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -32.29 337.46 -7.82 -40.11 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -4.73 Total: 14.91 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.16 Total: -20.59 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.39 Total: -35.67 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.31 Total: -21.91 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.10 Total: 18.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.29 -7.82 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406489.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.970 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds