Wall clock time and date at job start Tue Mar 31 2020 07:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00144 * 2 1 4 4 C 1.53002 * 109.47512 * 124.99828 * 3 2 1 5 5 H 1.08993 * 109.46873 * 54.99747 * 4 3 2 6 6 C 1.53007 * 109.46977 * 294.99984 * 4 3 2 7 7 O 1.42907 * 109.46782 * 64.99607 * 6 4 3 8 8 C 1.52999 * 109.47158 * 175.00295 * 4 3 2 9 9 N 1.46500 * 109.46865 * 185.00041 * 8 4 3 10 10 C 1.34772 * 120.00130 * 179.97438 * 9 8 4 11 11 O 1.21614 * 119.99763 * 359.97438 * 10 9 8 12 12 C 1.47434 * 120.00220 * 179.97438 * 10 9 8 13 13 C 1.39226 * 120.28056 * 355.34735 * 12 10 9 14 14 C 1.38220 * 120.09079 * 180.02562 * 13 12 10 15 15 C 1.38829 * 120.67597 * 0.02562 * 14 13 12 16 16 C 1.37600 * 120.57233 * 0.02562 * 15 14 13 17 17 C 1.40712 * 119.87711 * 359.67501 * 16 15 14 18 18 C 1.40888 * 120.32571 * 180.29738 * 17 16 15 19 19 H 1.07994 * 120.00214 * 215.85352 * 18 17 16 20 20 C 1.40279 * 120.00087 * 35.85660 * 18 17 16 21 21 N 1.30635 * 119.99781 * 8.97330 * 20 18 17 22 22 Si 1.86797 * 120.00092 * 188.97137 * 20 18 17 23 23 H 1.48501 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46794 * 119.99999 * 22 20 18 25 25 H 1.48496 * 109.47232 * 240.00220 * 22 20 18 26 26 H 1.08001 * 119.99986 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.00115 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99986 * 179.97438 * 2 1 3 29 29 H 1.09013 * 109.47063 * 4.99714 * 3 2 1 30 30 H 1.09002 * 109.47188 * 245.00207 * 3 2 1 31 31 H 1.08996 * 109.47207 * 184.99395 * 6 4 3 32 32 H 1.08999 * 109.46940 * 305.00060 * 6 4 3 33 33 H 0.96694 * 113.99731 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46960 * 304.99519 * 8 4 3 35 35 H 1.09002 * 109.47139 * 65.00237 * 8 4 3 36 36 H 0.97000 * 120.00009 * 359.97438 * 9 8 4 37 37 H 1.07994 * 119.95312 * 359.97438 * 13 12 10 38 38 H 1.08000 * 119.66103 * 180.02562 * 14 13 12 39 39 H 1.08001 * 119.71672 * 179.97438 * 15 14 13 40 40 H 1.07991 * 120.06229 * 179.97438 * 16 15 14 41 41 H 0.96996 * 119.99296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6826 0.4573 1.1404 6 6 2.2450 1.3219 2.4919 7 8 1.5391 0.0851 2.6119 8 6 3.8875 2.6016 1.1110 9 7 4.8971 2.5712 2.1721 10 6 5.7672 3.5919 2.3039 11 8 5.7146 4.5380 1.5416 12 6 6.7829 3.5616 3.3721 13 6 6.7878 2.5300 4.3071 14 6 7.7415 2.5057 5.3073 15 6 8.7024 3.5039 5.3940 16 6 8.7225 4.5369 4.4853 17 6 7.7666 4.5816 3.4537 18 6 7.7823 5.6316 2.5143 19 1 6.8535 6.0241 2.1276 20 6 9.0044 6.1672 2.0814 21 7 10.1261 5.5835 2.4095 22 14 9.0278 7.7148 1.0356 23 1 7.6357 8.1777 0.8054 24 1 9.7920 8.7761 1.7392 25 1 9.6743 7.4212 -0.2686 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6213 1.4025 -0.9314 31 1 2.9317 1.4312 3.3312 32 1 1.5337 2.1478 2.4943 33 1 1.0156 0.0080 3.4212 34 1 4.3816 2.6538 0.1408 35 1 3.2496 3.4758 1.2414 36 1 4.9393 1.8164 2.7799 37 1 6.0449 1.7481 4.2512 38 1 7.7391 1.7019 6.0286 39 1 9.4401 3.4698 6.1821 40 1 9.4735 5.3093 4.5607 41 1 10.9711 5.9541 2.1104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601406490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:48 Heat of formation + Delta-G solvation = -57.012382 kcal Electronic energy + Delta-G solvation = -22502.663908 eV Core-core repulsion = 19154.347183 eV Total energy + Delta-G solvation = -3348.316724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.18369 -38.00468 -36.70773 -35.27428 -34.13032 -33.56322 -31.39241 -29.91922 -29.40701 -26.19100 -25.84976 -24.95357 -22.12958 -20.95276 -20.41763 -19.87824 -19.30259 -17.65550 -17.28704 -16.18562 -15.79015 -15.56119 -15.19739 -14.64786 -14.54253 -14.25099 -13.89340 -13.61526 -13.23238 -13.14477 -12.72098 -12.69890 -12.24386 -12.13219 -11.65084 -11.52913 -11.44040 -11.14347 -11.05692 -10.85715 -10.81844 -10.63582 -10.50938 -10.13369 -10.09699 -9.67371 -9.27783 -9.11760 -8.40547 -8.35882 -7.60071 -7.34240 -6.80039 -4.39724 2.34685 2.38502 2.79491 3.11024 3.20286 3.22122 3.93483 3.98798 4.09241 4.18093 4.68830 4.73220 4.77858 5.02669 5.22220 5.31676 5.45642 5.55974 5.59150 5.64071 5.67924 5.86832 5.92467 5.96215 5.98828 6.15668 6.25325 6.28888 6.60526 6.66844 6.84853 6.93721 7.06705 7.14302 7.23735 7.45136 7.53579 7.60702 7.87075 7.98444 8.17318 8.36599 8.68055 8.83027 8.90442 9.41004 10.16161 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019297 B = 0.003962 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.641493 B = 7064.671553 C = 8299.605617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.094 4.094 5 H 0.084 0.916 6 C 0.081 3.919 7 O -0.564 6.564 8 C 0.131 3.869 9 N -0.750 5.750 10 C 0.564 3.436 11 O -0.539 6.539 12 C -0.261 4.261 13 C -0.058 4.058 14 C -0.244 4.244 15 C -0.096 4.096 16 C -0.146 4.146 17 C 0.147 3.853 18 C -0.422 4.422 19 H 0.111 0.889 20 C 0.068 3.932 21 N -0.794 5.794 22 Si 0.916 3.084 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.373 0.627 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.391 0.609 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 -7.708 -0.559 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.113 4.113 5 H 0.102 0.898 6 C 0.003 3.997 7 O -0.369 6.369 8 C 0.007 3.993 9 N -0.406 5.406 10 C 0.358 3.642 11 O -0.417 6.417 12 C -0.266 4.266 13 C -0.076 4.076 14 C -0.264 4.264 15 C -0.115 4.115 16 C -0.166 4.166 17 C 0.143 3.857 18 C -0.450 4.450 19 H 0.129 0.871 20 C -0.150 4.150 21 N -0.419 5.419 22 Si 0.740 3.260 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.219 0.781 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.735 -7.083 -1.752 13.818 hybrid contribution 0.015 0.176 0.471 0.503 sum -11.719 -6.907 -1.281 13.664 Atomic orbital electron populations 1.23562 0.95869 1.00927 1.03732 1.22633 0.95779 0.97745 0.97242 1.20717 0.97788 0.96071 0.97741 1.21393 0.96570 0.99052 0.94283 0.89753 1.22205 0.94433 0.85988 0.97101 1.86547 1.66519 1.38013 1.45842 1.21123 0.89849 0.96093 0.92265 1.46060 1.35206 1.24388 1.34941 1.18413 0.80283 0.81086 0.84384 1.90655 1.71633 1.33956 1.45487 1.19469 1.05272 1.00520 1.01326 1.20636 0.96704 0.95628 0.94675 1.20287 1.01022 1.02172 1.02899 1.20801 0.97235 0.95170 0.98282 1.21344 1.01287 0.99198 0.94727 1.17494 0.88326 0.89462 0.90429 1.20345 0.94343 1.12052 1.18303 0.87132 1.26154 0.94978 0.97738 0.96093 1.69728 0.98961 1.36429 1.36823 0.86118 0.79804 0.80674 0.79375 1.17986 1.19899 1.19942 0.89348 0.89193 0.87848 0.91408 0.90644 0.93412 0.93677 0.78082 0.91425 0.91997 0.77390 0.89366 0.89100 0.89069 0.86667 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 14.08 29.01 0.41 -1.55 16 2 C -0.12 -1.20 7.31 -36.03 -0.26 -1.46 16 3 C -0.09 -0.89 5.13 -27.89 -0.14 -1.03 16 4 C -0.09 -1.08 2.26 -90.61 -0.20 -1.28 16 5 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 6 C 0.08 0.85 6.34 37.16 0.24 1.09 16 7 O -0.56 -5.53 11.22 -35.23 -0.40 -5.93 16 8 C 0.13 1.91 5.06 -4.04 -0.02 1.89 16 9 N -0.75 -13.00 5.18 -61.38 -0.32 -13.32 16 10 C 0.56 12.93 7.72 -12.52 -0.10 12.83 16 11 O -0.54 -14.05 13.53 5.27 0.07 -13.98 16 12 C -0.26 -6.33 5.92 -104.37 -0.62 -6.95 16 13 C -0.06 -1.21 9.52 -39.22 -0.37 -1.59 16 14 C -0.24 -5.16 10.03 -39.37 -0.39 -5.55 16 15 C -0.10 -2.15 10.01 -39.60 -0.40 -2.55 16 16 C -0.15 -3.71 8.62 -38.88 -0.34 -4.04 16 17 C 0.15 3.94 5.48 -106.54 -0.58 3.35 16 18 C -0.42 -11.61 7.78 -37.81 -0.29 -11.90 16 19 H 0.11 3.16 5.73 -52.49 -0.30 2.86 16 20 C 0.07 1.76 5.25 -17.29 -0.09 1.67 16 21 N -0.79 -20.63 11.25 55.56 0.63 -20.01 16 22 Si 0.92 19.68 29.57 -169.99 -5.03 14.65 16 23 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H 0.09 0.81 7.84 -52.49 -0.41 0.40 16 27 H 0.09 0.79 8.06 -52.48 -0.42 0.36 16 28 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.07 0.69 7.79 -51.92 -0.40 0.28 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.52 7.07 -51.93 -0.37 0.15 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.37 2.26 9.12 45.56 0.42 2.68 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.39 5.94 5.71 -40.82 -0.23 5.71 16 37 H 0.09 1.53 6.42 -52.49 -0.34 1.20 16 38 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.12 2.98 6.72 -52.49 -0.35 2.63 16 41 H 0.28 6.63 8.29 -40.82 -0.34 6.29 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -30.44 340.23 -8.02 -38.46 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.93 Total: 12.07 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -3.17 Total: -17.08 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.31 Total: -33.33 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.32 Total: -19.91 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.44 -8.02 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.550 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds