Wall clock time and date at job start Tue Mar 31 2020 07:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30997 * 119.99638 * 2 1 4 4 C 1.50707 * 120.00283 * 0.02562 * 3 2 1 5 5 C 1.52990 * 109.47211 * 124.99977 * 4 3 2 6 6 H 1.09003 * 109.47560 * 305.00286 * 5 4 3 7 7 C 1.53005 * 109.47394 * 185.00164 * 5 4 3 8 8 O 1.42902 * 109.46598 * 305.00209 * 7 5 4 9 9 N 1.46497 * 109.47393 * 64.99987 * 5 4 3 10 10 C 1.34779 * 120.00743 * 204.99834 * 9 5 4 11 11 O 1.21612 * 119.99580 * 0.02562 * 10 9 5 12 12 C 1.47428 * 120.00662 * 180.02562 * 10 9 5 13 13 C 1.39225 * 120.27968 * 355.34950 * 12 10 9 14 14 C 1.38219 * 120.09198 * 180.02562 * 13 12 10 15 15 C 1.38828 * 120.67505 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.56883 * 0.02562 * 15 14 13 17 17 C 1.40706 * 119.88457 * 359.67422 * 16 15 14 18 18 C 1.40887 * 120.32954 * 180.29951 * 17 16 15 19 19 H 1.08001 * 120.00097 * 215.84974 * 18 17 16 20 20 C 1.40274 * 120.00206 * 35.85417 * 18 17 16 21 21 N 1.30633 * 119.99745 * 8.97089 * 20 18 17 22 22 Si 1.86804 * 120.00175 * 188.97476 * 20 18 17 23 23 H 1.48504 * 109.46962 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46854 * 119.99599 * 22 20 18 25 25 H 1.48492 * 109.47090 * 239.99908 * 22 20 18 26 26 H 1.09005 * 109.47166 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47640 * 299.99711 * 1 2 3 28 28 H 1.09000 * 109.47323 * 60.00277 * 1 2 3 29 29 H 1.07991 * 120.00312 * 180.02562 * 2 1 3 30 30 H 1.08001 * 120.00065 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46625 * 4.99769 * 4 3 2 32 32 H 1.09002 * 109.46866 * 245.00320 * 4 3 2 33 33 H 1.08990 * 109.47315 * 185.00217 * 7 5 4 34 34 H 1.09003 * 109.46719 * 64.99680 * 7 5 4 35 35 H 0.96700 * 113.99449 * 180.02562 * 8 7 5 36 36 H 0.97007 * 119.99770 * 25.00059 * 9 5 4 37 37 H 1.07999 * 119.95669 * 0.03281 * 13 12 10 38 38 H 1.08006 * 119.66369 * 180.02562 * 14 13 12 39 39 H 1.08005 * 119.71582 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.05777 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99351 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 1.4084 2.4397 0.0006 5 6 1.8703 3.2947 1.1821 6 1 1.7586 2.7280 2.1065 7 6 1.0196 4.5643 1.2564 8 8 1.0738 5.2479 0.0027 9 7 3.2774 3.6597 1.0003 10 6 4.0412 3.9539 2.0710 11 8 3.5625 3.9158 3.1883 12 6 5.4571 4.3218 1.8879 13 6 6.0370 4.2738 0.6231 14 6 7.3649 4.6190 0.4560 15 6 8.1354 5.0158 1.5405 16 6 7.5907 5.0720 2.8027 17 6 6.2395 4.7319 2.9990 18 6 5.6704 4.7922 4.2864 19 1 4.9320 4.0629 4.5851 20 6 6.0628 5.7997 5.1802 21 7 6.8190 6.7813 4.7667 22 14 5.5039 5.7375 6.9616 23 1 4.6613 4.5332 7.1742 24 1 6.6916 5.6746 7.8509 25 1 4.7143 6.9552 7.2754 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.0470 -0.9352 -0.0004 30 1 3.2419 1.1346 -0.0004 31 1 0.3401 2.2423 0.0905 32 1 1.6024 2.9716 -0.9308 33 1 1.4050 5.2145 2.0417 34 1 -0.0132 4.2970 1.4802 35 1 0.5562 6.0643 -0.0228 36 1 3.6593 3.6898 0.1091 37 1 5.4484 3.9665 -0.2287 38 1 7.8076 4.5797 -0.5284 39 1 9.1717 5.2818 1.3922 40 1 8.1978 5.3815 3.6406 41 1 7.0900 7.4781 5.3847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601457749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:45 Heat of formation + Delta-G solvation = -59.467611 kcal Electronic energy + Delta-G solvation = -22947.201053 eV Core-core repulsion = 19598.777862 eV Total energy + Delta-G solvation = -3348.423191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.24399 -37.59053 -36.36812 -35.86807 -33.91804 -33.39259 -30.72371 -29.78944 -28.93905 -27.62234 -25.36636 -25.23031 -22.60952 -21.17388 -20.39955 -19.41973 -18.45971 -17.45979 -17.24019 -16.31098 -15.55898 -15.35548 -15.17801 -14.59478 -14.27580 -14.09264 -13.61609 -13.36630 -13.27425 -13.12832 -12.99091 -12.68861 -12.23704 -11.91017 -11.86138 -11.59586 -11.29782 -11.20241 -11.11721 -10.96191 -10.67313 -10.59149 -10.47546 -10.06382 -9.88281 -9.63040 -9.25338 -8.91691 -8.36164 -8.24755 -7.55520 -7.29929 -6.77086 -4.36364 2.27447 2.39088 2.82561 3.11690 3.21325 3.23641 3.98332 4.00426 4.18065 4.50025 4.72441 4.84565 5.11929 5.16395 5.27135 5.43510 5.50356 5.57547 5.58864 5.67178 5.76663 5.86913 5.99276 6.05306 6.07866 6.20125 6.29696 6.34979 6.66144 6.71406 6.88994 6.98298 7.13004 7.20880 7.30085 7.49518 7.65551 7.74209 7.91770 8.03125 8.21388 8.46247 8.71755 8.86798 8.94312 9.47312 10.19233 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.004888 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.541625 B = 5727.131856 C = 6468.953158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.176 4.176 3 C -0.148 4.148 4 C -0.098 4.098 5 C 0.159 3.841 6 H 0.095 0.905 7 C 0.062 3.938 8 O -0.568 6.568 9 N -0.734 5.734 10 C 0.566 3.434 11 O -0.544 6.544 12 C -0.259 4.259 13 C -0.057 4.057 14 C -0.244 4.244 15 C -0.096 4.096 16 C -0.148 4.148 17 C 0.148 3.852 18 C -0.423 4.423 19 H 0.111 0.889 20 C 0.069 3.931 21 N -0.795 5.795 22 Si 0.915 3.085 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.275 1.275 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.373 0.627 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -5.656 -7.375 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.194 4.194 3 C -0.166 4.166 4 C -0.135 4.135 5 C 0.054 3.946 6 H 0.113 0.887 7 C -0.017 4.017 8 O -0.373 6.373 9 N -0.388 5.388 10 C 0.360 3.640 11 O -0.423 6.423 12 C -0.264 4.264 13 C -0.075 4.075 14 C -0.264 4.264 15 C -0.115 4.115 16 C -0.167 4.167 17 C 0.143 3.857 18 C -0.451 4.451 19 H 0.128 0.872 20 C -0.149 4.149 21 N -0.421 5.421 22 Si 0.739 3.261 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.219 0.781 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.379 -5.983 -6.610 12.940 hybrid contribution -0.250 0.746 0.410 0.887 sum -9.628 -5.237 -6.200 12.592 Atomic orbital electron populations 1.20839 0.93658 1.01748 1.01751 1.22736 0.96023 0.97831 1.02831 1.22880 1.00054 0.94095 0.99565 1.20968 0.99733 0.93656 0.99187 1.20772 0.82063 0.92752 0.99052 0.88727 1.22724 0.98084 0.94871 0.86010 1.86457 1.74908 1.41133 1.34786 1.45955 1.09652 1.73169 1.09995 1.18414 0.86372 0.75763 0.83431 1.90638 1.74824 1.52936 1.23888 1.19485 0.92383 1.20499 0.94008 1.20666 0.94696 0.97463 0.94717 1.20290 0.95121 1.13635 0.97330 1.20797 0.97778 0.99242 0.93660 1.21331 0.95246 1.04283 0.95821 1.17492 0.90305 0.86152 0.91712 1.20332 1.18694 1.10364 0.95745 0.87152 1.26139 0.93078 0.94635 1.01053 1.69733 1.27170 1.08297 1.36893 0.86139 0.79196 0.79584 0.81156 1.18021 1.19912 1.20025 0.92563 0.91716 0.91895 0.87612 0.87105 0.90272 0.89854 0.92596 0.93716 0.78070 0.77176 0.89213 0.89127 0.89127 0.86722 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 8.65 36.01 0.31 -0.83 16 2 C -0.18 -1.97 10.26 -36.03 -0.37 -2.34 16 3 C -0.15 -1.85 9.25 -36.02 -0.33 -2.19 16 4 C -0.10 -1.21 4.72 -27.89 -0.13 -1.34 16 5 C 0.16 2.45 2.36 -67.93 -0.16 2.29 16 6 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 7 C 0.06 0.89 6.85 37.16 0.25 1.14 16 8 O -0.57 -7.56 12.83 -35.23 -0.45 -8.01 16 9 N -0.73 -13.26 4.67 -54.88 -0.26 -13.51 16 10 C 0.57 13.10 7.69 -12.52 -0.10 13.00 16 11 O -0.54 -14.11 13.19 5.27 0.07 -14.04 16 12 C -0.26 -6.39 5.92 -104.37 -0.62 -7.00 16 13 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 14 C -0.24 -5.28 10.03 -39.37 -0.39 -5.67 16 15 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 16 C -0.15 -3.79 8.62 -38.89 -0.34 -4.12 16 17 C 0.15 3.99 5.48 -106.54 -0.58 3.41 16 18 C -0.42 -11.70 7.78 -37.81 -0.29 -12.00 16 19 H 0.11 3.17 5.73 -52.49 -0.30 2.87 16 20 C 0.07 1.78 5.25 -17.30 -0.09 1.69 16 21 N -0.80 -20.83 11.25 55.56 0.63 -20.20 16 22 Si 0.91 19.78 29.57 -169.99 -5.03 14.75 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.06 0.54 7.85 -51.93 -0.41 0.13 16 29 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.11 1.50 8.03 -52.49 -0.42 1.08 16 31 H 0.08 0.86 5.80 -51.93 -0.30 0.55 16 32 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.37 3.40 9.12 45.56 0.42 3.81 16 36 H 0.39 6.54 6.66 -40.82 -0.27 6.27 16 37 H 0.09 1.64 6.42 -52.49 -0.34 1.30 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 40 H 0.11 3.00 6.72 -52.48 -0.35 2.65 16 41 H 0.28 6.66 8.29 -40.82 -0.34 6.33 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -30.57 341.40 -8.35 -38.92 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -4.84 Total: 15.09 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -3.61 Total: -18.14 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.37 Total: -33.72 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.38 Total: -22.05 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.57 -8.35 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601457749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.546 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds