Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 110.88865 * 2 1 4 4 C 1.55131 * 111.18976 * 236.06781 * 2 1 3 5 5 N 1.47428 * 104.72343 * 279.19032 * 4 2 1 6 6 C 1.34771 * 125.64806 * 155.81484 * 5 4 2 7 7 O 1.21608 * 120.00006 * 4.19625 * 6 5 4 8 8 C 1.47429 * 120.00313 * 184.18796 * 6 5 4 9 9 C 1.39229 * 120.27803 * 313.04282 * 8 6 5 10 10 C 1.38226 * 120.08795 * 180.27087 * 9 8 6 11 11 C 1.38826 * 120.67985 * 0.02562 * 10 9 8 12 12 C 1.37593 * 120.56681 * 359.97438 * 11 10 9 13 13 C 1.40705 * 119.88621 * 0.02562 * 12 11 10 14 14 C 1.40885 * 120.33201 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00254 * 143.52762 * 14 13 12 16 16 C 1.40270 * 120.00203 * 323.53655 * 14 13 12 17 17 N 1.30627 * 120.00478 * 167.80217 * 16 14 13 18 18 Si 1.86801 * 119.99833 * 347.79272 * 16 14 13 19 19 H 1.48501 * 109.46788 * 91.34701 * 18 16 14 20 20 H 1.48490 * 109.47440 * 211.34489 * 18 16 14 21 21 H 1.48498 * 109.46982 * 331.35145 * 18 16 14 22 22 C 1.47025 * 108.70265 * 335.55520 * 5 4 2 23 23 C 1.54321 * 107.27077 * 1.28565 * 22 5 4 24 24 H 1.09001 * 110.72001 * 263.82711 * 23 22 5 25 25 O 1.42905 * 110.71990 * 140.73030 * 23 22 5 26 26 H 1.09005 * 109.47185 * 296.11609 * 1 2 3 27 27 H 1.09001 * 109.47123 * 56.11492 * 1 2 3 28 28 H 1.09004 * 109.47513 * 176.12140 * 1 2 3 29 29 H 1.08996 * 109.47101 * 183.87793 * 3 2 1 30 30 H 1.09002 * 109.47153 * 303.88509 * 3 2 1 31 31 H 1.09004 * 109.47259 * 63.88050 * 3 2 1 32 32 H 1.08999 * 110.49175 * 160.35251 * 4 2 1 33 33 H 1.08995 * 110.34229 * 37.95602 * 4 2 1 34 34 H 1.07999 * 119.95770 * 0.24886 * 9 8 6 35 35 H 1.08008 * 119.65931 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.71707 * 179.97438 * 11 10 9 37 37 H 1.08004 * 120.05994 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00445 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.88052 * 120.69961 * 22 5 4 40 40 H 1.08996 * 109.88168 * 241.71446 * 22 5 4 41 41 H 0.96702 * 113.99663 * 61.45373 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7725 6 6 1.9469 -3.2835 -1.5928 7 8 2.0237 -3.1307 -2.7968 8 6 1.7808 -4.6362 -1.0305 9 6 2.5685 -5.0534 0.0390 10 6 2.4134 -6.3245 0.5595 11 6 1.4759 -7.1987 0.0263 12 6 0.6831 -6.8150 -1.0307 13 6 0.8210 -5.5265 -1.5790 14 6 0.0144 -5.1240 -2.6618 15 1 -0.3390 -4.1053 -2.7225 16 6 -0.3299 -6.0464 -3.6609 17 7 -1.2601 -5.7519 -4.5294 18 14 0.5422 -7.6960 -3.7497 19 1 -0.2111 -8.6975 -2.9529 20 1 0.6149 -8.1421 -5.1641 21 1 1.9158 -7.5598 -3.2022 22 6 2.0284 -2.2644 0.6969 23 6 2.0861 -0.8076 1.2025 24 1 3.1133 -0.5156 1.4212 25 8 1.2583 -0.6393 2.3552 26 1 -0.3634 0.4524 0.9228 27 1 -0.3633 0.5730 -0.8531 28 1 -0.3634 -1.0253 -0.0695 29 1 3.1629 1.4033 -0.0695 30 1 1.6697 1.9731 -0.8531 31 1 1.7823 1.9302 0.9227 32 1 3.1252 -0.5272 -1.3985 33 1 1.4763 -0.6457 -2.0857 34 1 3.3020 -4.3832 0.4623 35 1 3.0284 -6.6411 1.3890 36 1 1.3680 -8.1884 0.4448 37 1 -0.0439 -7.5016 -1.4388 38 1 -1.4979 -6.3896 -5.2205 39 1 1.1217 -2.7476 1.0609 40 1 2.9048 -2.8137 1.0410 41 1 1.5209 -1.1828 3.1107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601543543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = -63.401396 kcal Electronic energy + Delta-G solvation = -23732.056497 eV Core-core repulsion = 20383.462724 eV Total energy + Delta-G solvation = -3348.593773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10254 -38.31748 -36.86701 -35.38182 -33.75556 -33.22846 -30.55955 -30.12851 -28.47947 -27.27641 -26.43384 -25.14182 -23.13181 -21.75911 -21.09852 -19.20959 -18.80405 -17.47911 -17.24018 -16.52920 -15.94495 -15.30025 -15.07350 -14.45297 -14.25140 -14.16923 -13.83798 -13.46964 -13.14625 -12.96991 -12.76371 -12.54786 -12.34595 -12.13004 -12.03076 -11.86124 -11.77519 -11.56385 -11.04268 -10.93645 -10.90312 -10.81031 -10.47589 -10.24760 -10.15962 -9.96008 -9.82020 -9.25557 -8.82546 -8.11919 -7.83214 -7.65341 -6.95285 -4.52888 2.17993 2.56416 3.09120 3.18362 3.31185 3.47209 3.75470 3.97385 4.15101 4.40772 4.51169 4.56180 4.90573 5.12197 5.26203 5.29724 5.32921 5.54835 5.61577 5.72351 5.73923 5.90035 5.94385 5.96832 6.00078 6.03199 6.05543 6.17608 6.23554 6.28785 6.50406 6.52339 6.76109 6.80781 7.07749 7.21514 7.39210 7.53242 7.55351 7.71737 7.96478 8.15662 8.33693 8.54666 8.72046 9.11857 10.06372 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.005518 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.369832 B = 5073.196199 C = 5841.287449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 C -0.134 4.134 4 C 0.116 3.884 5 N -0.623 5.623 6 C 0.595 3.405 7 O -0.526 6.526 8 C -0.235 4.235 9 C -0.050 4.050 10 C -0.250 4.250 11 C -0.066 4.066 12 C -0.229 4.229 13 C 0.123 3.877 14 C -0.415 4.415 15 H 0.092 0.908 16 C 0.085 3.915 17 N -0.799 5.799 18 Si 0.912 3.088 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.244 1.244 22 C 0.076 3.924 23 C 0.099 3.901 24 H 0.070 0.930 25 O -0.553 6.553 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 7.654 11.101 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.191 4.191 4 C -0.007 4.007 5 N -0.361 5.361 6 C 0.388 3.612 7 O -0.401 6.401 8 C -0.239 4.239 9 C -0.069 4.069 10 C -0.269 4.269 11 C -0.084 4.084 12 C -0.248 4.248 13 C 0.119 3.881 14 C -0.442 4.442 15 H 0.110 0.890 16 C -0.135 4.135 17 N -0.423 5.423 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.167 1.167 22 C -0.048 4.048 23 C 0.039 3.961 24 H 0.088 0.912 25 O -0.357 6.357 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 5.218 8.067 9.718 13.666 hybrid contribution 0.595 -1.210 0.273 1.376 sum 5.813 6.857 9.992 13.441 Atomic orbital electron populations 1.21551 0.92566 1.02658 1.01592 1.21835 0.97405 0.94846 0.92922 1.21722 1.00539 0.94506 1.02371 1.22275 1.00328 0.81009 0.97117 1.48362 1.76262 1.05665 1.05797 1.18121 0.74444 0.83425 0.85256 1.90740 1.49183 1.85675 1.14497 1.19418 1.04836 0.95203 1.04453 1.20820 0.96754 0.95620 0.93678 1.20286 1.05588 0.95628 1.05446 1.20740 0.94705 0.97430 0.95528 1.21136 1.04411 0.98480 1.00750 1.17467 0.88826 0.90084 0.91728 1.19457 1.22627 0.99028 1.03127 0.88992 1.26184 0.92738 1.00034 0.94535 1.69559 1.22704 1.36977 1.13043 0.86306 0.82625 0.80419 0.76892 1.19384 1.21473 1.16689 1.22761 1.02601 0.97110 0.82354 1.22903 0.93418 0.93691 0.86056 0.91174 1.86533 1.57258 1.68502 1.23440 0.91691 0.92816 0.92112 0.92513 0.92053 0.91900 0.91971 0.90148 0.88369 0.88494 0.88501 0.87565 0.90234 0.90460 0.91406 0.77485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.18 37.16 0.30 -1.42 16 2 C -0.07 -0.87 0.89 -152.24 -0.13 -1.01 16 3 C -0.13 -1.33 8.68 37.15 0.32 -1.01 16 4 C 0.12 1.80 5.83 -2.41 -0.01 1.78 16 5 N -0.62 -11.42 3.31 -171.65 -0.57 -11.99 16 6 C 0.59 13.92 6.79 -12.52 -0.09 13.84 16 7 O -0.53 -14.31 16.11 5.27 0.08 -14.23 16 8 C -0.23 -5.56 5.47 -104.37 -0.57 -6.13 16 9 C -0.05 -1.01 8.52 -39.22 -0.33 -1.34 16 10 C -0.25 -4.88 10.03 -39.37 -0.39 -5.27 16 11 C -0.07 -1.35 10.01 -39.60 -0.40 -1.75 16 12 C -0.23 -5.40 7.12 -38.89 -0.28 -5.68 16 13 C 0.12 3.18 5.01 -106.54 -0.53 2.65 16 14 C -0.41 -11.70 8.16 -37.82 -0.31 -12.01 16 15 H 0.09 2.83 7.54 -52.48 -0.40 2.44 16 16 C 0.09 2.31 5.46 -17.30 -0.09 2.21 16 17 N -0.80 -21.95 13.92 55.56 0.77 -21.17 16 18 Si 0.91 21.31 24.57 -169.99 -4.18 17.14 16 19 H -0.27 -5.88 6.68 56.52 0.38 -5.50 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.24 -5.91 6.91 56.52 0.39 -5.52 16 22 C 0.08 1.09 5.09 -3.06 -0.02 1.08 16 23 C 0.10 1.15 3.56 -24.90 -0.09 1.06 16 24 H 0.07 0.69 8.04 -51.93 -0.42 0.28 16 25 O -0.55 -5.95 12.17 -35.23 -0.43 -6.38 16 26 H 0.06 0.84 7.53 -51.93 -0.39 0.45 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 29 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 33 H 0.08 1.38 8.00 -51.93 -0.42 0.97 16 34 H 0.10 1.69 5.88 -52.49 -0.31 1.38 16 35 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.11 2.48 5.11 -52.48 -0.27 2.21 16 38 H 0.29 7.09 8.29 -40.82 -0.34 6.76 16 39 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 40 H 0.07 0.89 5.94 -51.93 -0.31 0.58 16 41 H 0.38 2.51 9.11 45.56 0.42 2.93 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -31.80 327.59 -7.04 -38.84 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.04 Total: 5.86 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.62 Total: -13.01 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.21 Total: -33.16 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.34 Total: -20.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.18 Total: 17.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.80 -7.04 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601543543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.566 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds