Wall clock time and date at job start Tue Mar 31 2020 05:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 110.88865 * 2 1 4 4 C 1.55131 * 111.18976 * 236.06781 * 2 1 3 5 5 N 1.47428 * 104.72343 * 279.19032 * 4 2 1 6 6 C 1.34771 * 125.64806 * 155.81484 * 5 4 2 7 7 O 1.21608 * 120.00006 * 4.19625 * 6 5 4 8 8 C 1.47429 * 120.00313 * 184.18796 * 6 5 4 9 9 C 1.39229 * 120.27803 * 313.04282 * 8 6 5 10 10 C 1.38226 * 120.08795 * 180.27087 * 9 8 6 11 11 C 1.38826 * 120.67985 * 0.02562 * 10 9 8 12 12 C 1.37593 * 120.56681 * 359.97438 * 11 10 9 13 13 C 1.40705 * 119.88621 * 0.02562 * 12 11 10 14 14 C 1.40885 * 120.33201 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00254 * 143.52762 * 14 13 12 16 16 C 1.40270 * 120.00203 * 323.53655 * 14 13 12 17 17 N 1.30627 * 120.00478 * 167.80217 * 16 14 13 18 18 Si 1.86801 * 119.99833 * 347.79272 * 16 14 13 19 19 H 1.48501 * 109.46788 * 91.34701 * 18 16 14 20 20 H 1.48490 * 109.47440 * 211.34489 * 18 16 14 21 21 H 1.48498 * 109.46982 * 331.35145 * 18 16 14 22 22 C 1.47025 * 108.70265 * 335.55520 * 5 4 2 23 23 C 1.54321 * 107.27077 * 1.28565 * 22 5 4 24 24 H 1.09001 * 110.72001 * 263.82711 * 23 22 5 25 25 O 1.42905 * 110.71990 * 140.73030 * 23 22 5 26 26 H 1.09005 * 109.47185 * 296.11609 * 1 2 3 27 27 H 1.09001 * 109.47123 * 56.11492 * 1 2 3 28 28 H 1.09004 * 109.47513 * 176.12140 * 1 2 3 29 29 H 1.08996 * 109.47101 * 183.87793 * 3 2 1 30 30 H 1.09002 * 109.47153 * 303.88509 * 3 2 1 31 31 H 1.09004 * 109.47259 * 63.88050 * 3 2 1 32 32 H 1.08999 * 110.49175 * 160.35251 * 4 2 1 33 33 H 1.08995 * 110.34229 * 37.95602 * 4 2 1 34 34 H 1.07999 * 119.95770 * 0.24886 * 9 8 6 35 35 H 1.08008 * 119.65931 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.71707 * 179.97438 * 11 10 9 37 37 H 1.08004 * 120.05994 * 180.02562 * 12 11 10 38 38 H 0.97000 * 120.00445 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.88052 * 120.69961 * 22 5 4 40 40 H 1.08996 * 109.88168 * 241.71446 * 22 5 4 41 41 H 0.96702 * 113.99663 * 61.45373 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0138 -2.2162 -0.7725 6 6 1.9469 -3.2835 -1.5928 7 8 2.0237 -3.1307 -2.7968 8 6 1.7808 -4.6362 -1.0305 9 6 2.5685 -5.0534 0.0390 10 6 2.4134 -6.3245 0.5595 11 6 1.4759 -7.1987 0.0263 12 6 0.6831 -6.8150 -1.0307 13 6 0.8210 -5.5265 -1.5790 14 6 0.0144 -5.1240 -2.6618 15 1 -0.3390 -4.1053 -2.7225 16 6 -0.3299 -6.0464 -3.6609 17 7 -1.2601 -5.7519 -4.5294 18 14 0.5422 -7.6960 -3.7497 19 1 -0.2111 -8.6975 -2.9529 20 1 0.6149 -8.1421 -5.1641 21 1 1.9158 -7.5598 -3.2022 22 6 2.0284 -2.2644 0.6969 23 6 2.0861 -0.8076 1.2025 24 1 3.1133 -0.5156 1.4212 25 8 1.2583 -0.6393 2.3552 26 1 -0.3634 0.4524 0.9228 27 1 -0.3633 0.5730 -0.8531 28 1 -0.3634 -1.0253 -0.0695 29 1 3.1629 1.4033 -0.0695 30 1 1.6697 1.9731 -0.8531 31 1 1.7823 1.9302 0.9227 32 1 3.1252 -0.5272 -1.3985 33 1 1.4763 -0.6457 -2.0857 34 1 3.3020 -4.3832 0.4623 35 1 3.0284 -6.6411 1.3890 36 1 1.3680 -8.1884 0.4448 37 1 -0.0439 -7.5016 -1.4388 38 1 -1.4979 -6.3896 -5.2205 39 1 1.1217 -2.7476 1.0609 40 1 2.9048 -2.8137 1.0410 41 1 1.5209 -1.1828 3.1107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601543543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:59 Heat of formation + Delta-G solvation = -87.248439 kcal Electronic energy + Delta-G solvation = -23733.090583 eV Core-core repulsion = 20383.462724 eV Total energy + Delta-G solvation = -3349.627858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49221 -39.85347 -38.57367 -36.47316 -35.60835 -34.60725 -32.41098 -31.80816 -29.66859 -28.31015 -27.88279 -26.86922 -24.50863 -23.27709 -22.84356 -20.57322 -20.17247 -19.37719 -18.24395 -18.05761 -17.49017 -16.89265 -16.65079 -15.98160 -15.79367 -15.50665 -15.29646 -14.76689 -14.69288 -14.43183 -14.13954 -14.04840 -13.85519 -13.65156 -13.35708 -13.31538 -12.94327 -12.83199 -12.78605 -12.64358 -12.20422 -12.07057 -11.96027 -11.88424 -11.68904 -11.27315 -11.12487 -11.06978 -10.59701 -9.71066 -9.53032 -9.44000 -8.91604 -6.56251 0.41212 0.78558 1.19920 1.33903 1.43782 1.88838 2.06598 2.15587 2.61225 3.21543 3.30057 3.42196 3.51624 3.91428 4.01353 4.10658 4.16422 4.28895 4.35115 4.39236 4.59328 4.63152 4.70311 4.71509 4.80179 4.84136 4.90402 4.95716 4.96382 5.01973 5.11988 5.24523 5.29589 5.34065 5.40768 5.50328 5.67156 5.78805 5.88771 6.14417 6.31521 6.52582 6.68421 6.71733 6.91903 7.36458 8.18126 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020563 B = 0.005518 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.369832 B = 5073.196199 C = 5841.287449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.127 4.127 4 C 0.108 3.892 5 N -0.620 5.620 6 C 0.583 3.417 7 O -0.584 6.584 8 C -0.250 4.250 9 C -0.049 4.049 10 C -0.219 4.219 11 C -0.064 4.064 12 C -0.244 4.244 13 C 0.101 3.899 14 C -0.459 4.459 15 H 0.034 0.966 16 C 0.040 3.960 17 N -0.854 5.854 18 Si 0.970 3.030 19 H -0.240 1.240 20 H -0.278 1.278 21 H -0.257 1.257 22 C 0.069 3.931 23 C 0.116 3.884 24 H 0.106 0.894 25 O -0.561 6.561 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.023 0.977 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.104 0.896 38 H 0.294 0.706 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 6.927 15.461 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 C -0.184 4.184 4 C -0.014 4.014 5 N -0.355 5.355 6 C 0.376 3.624 7 O -0.464 6.464 8 C -0.254 4.254 9 C -0.067 4.067 10 C -0.238 4.238 11 C -0.082 4.082 12 C -0.263 4.263 13 C 0.098 3.902 14 C -0.489 4.489 15 H 0.053 0.947 16 C -0.173 4.173 17 N -0.481 5.481 18 Si 0.792 3.208 19 H -0.164 1.164 20 H -0.205 1.205 21 H -0.180 1.180 22 C -0.054 4.054 23 C 0.056 3.944 24 H 0.124 0.876 25 O -0.368 6.368 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.342 7.361 14.168 18.014 hybrid contribution -0.236 -0.877 -0.757 1.182 sum 8.106 6.484 13.411 16.959 Atomic orbital electron populations 1.21508 0.94032 1.00317 1.02173 1.21843 0.96206 0.96499 0.92162 1.21691 1.01563 0.92085 1.03099 1.22512 1.01201 0.80045 0.97641 1.48297 1.73933 1.05704 1.07537 1.18311 0.74282 0.84833 0.84988 1.90693 1.52041 1.86678 1.17001 1.19770 1.04962 0.95282 1.05384 1.21232 0.96305 0.96907 0.92287 1.20965 1.03773 0.94209 1.04866 1.21262 0.93505 0.99594 0.93840 1.21256 1.05517 0.97453 1.02046 1.17702 0.89162 0.92001 0.91358 1.19236 1.26507 0.96873 1.06264 0.94730 1.26963 0.93229 1.03337 0.93786 1.69613 1.25018 1.38755 1.14721 0.85447 0.80722 0.76987 0.77653 1.16447 1.20451 1.18048 1.23083 1.02791 0.99978 0.79506 1.22812 0.95014 0.90775 0.85793 0.87650 1.86500 1.57579 1.68955 1.23811 0.90446 0.92927 0.95796 0.90674 0.91998 0.90638 0.89843 0.93359 0.84584 0.83410 0.84225 0.87786 0.89593 0.92165 0.88940 0.75067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.18 71.98 0.59 -2.83 16 2 C -0.07 -1.57 0.89 -50.71 -0.04 -1.62 16 3 C -0.13 -2.15 8.68 71.98 0.62 -1.52 16 4 C 0.11 3.41 5.83 86.93 0.51 3.92 16 5 N -0.62 -23.00 3.31 -815.22 -2.70 -25.70 16 6 C 0.58 28.62 6.79 86.67 0.59 29.21 16 7 O -0.58 -34.46 16.11 -4.06 -0.07 -34.53 16 8 C -0.25 -11.93 5.47 -19.70 -0.11 -12.04 16 9 C -0.05 -1.80 8.52 22.51 0.19 -1.61 16 10 C -0.22 -7.24 10.03 22.41 0.22 -7.02 16 11 C -0.06 -2.35 10.01 22.26 0.22 -2.12 16 12 C -0.24 -11.26 7.12 22.72 0.16 -11.10 16 13 C 0.10 5.42 5.01 -21.11 -0.11 5.32 16 14 C -0.46 -28.30 8.16 23.41 0.19 -28.11 16 15 H 0.03 2.42 7.54 -2.91 -0.02 2.40 16 16 C 0.04 2.34 5.46 85.37 0.47 2.81 16 17 N -0.85 -51.00 13.92 21.88 0.30 -50.69 16 18 Si 0.97 45.34 24.57 68.60 1.69 47.03 16 19 H -0.24 -9.99 6.68 99.48 0.66 -9.33 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -12.31 6.91 99.48 0.69 -11.62 16 22 C 0.07 1.84 5.09 86.73 0.44 2.28 16 23 C 0.12 2.27 3.56 31.78 0.11 2.38 16 24 H 0.11 1.46 8.04 -2.39 -0.02 1.44 16 25 O -0.56 -10.00 12.17 -148.98 -1.81 -11.81 16 26 H 0.08 1.94 7.53 -2.38 -0.02 1.92 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.02 0.81 7.91 -2.38 -0.02 0.79 16 29 H 0.07 1.03 8.07 -2.39 -0.02 1.01 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 2.28 7.99 -2.39 -0.02 2.26 16 33 H 0.05 1.81 8.00 -2.39 -0.02 1.79 16 34 H 0.14 3.93 5.88 -2.91 -0.02 3.92 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.10 4.79 5.11 -2.91 -0.01 4.77 16 38 H 0.29 15.65 8.29 -92.71 -0.77 14.88 16 39 H 0.06 1.82 8.06 -2.39 -0.02 1.80 16 40 H 0.09 2.00 5.94 -2.39 -0.01 1.99 16 41 H 0.40 3.55 9.11 -74.06 -0.67 2.87 16 Total: -1.00 -79.19 327.59 1.79 -77.40 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.31 Total: 20.35 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.06 Total: -22.05 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.39 Total: -76.39 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.88 Total: -46.34 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.69 Total: 47.03 kcal Total: -79.19 1.79 -77.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601543543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.846 kcal (2) G-P(sol) polarization free energy of solvation -79.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds