Wall clock time and date at job start Tue Mar 31 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 C 1.53002 * 109.47068 * 124.99635 * 3 2 1 5 5 C 1.53002 * 109.47318 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47048 * 305.00816 * 5 4 3 7 7 C 1.52997 * 109.47197 * 185.00366 * 5 4 3 8 8 O 1.42894 * 109.47108 * 305.00306 * 7 5 4 9 9 N 1.46502 * 109.46663 * 65.00579 * 5 4 3 10 10 C 1.34778 * 119.99684 * 204.99932 * 9 5 4 11 11 O 1.21614 * 120.00230 * 0.02562 * 10 9 5 12 12 C 1.47430 * 119.99896 * 179.72120 * 10 9 5 13 13 C 1.39224 * 120.28201 * 354.43884 * 12 10 9 14 14 C 1.38227 * 120.09224 * 179.97438 * 13 12 10 15 15 C 1.38827 * 120.67287 * 0.02562 * 14 13 12 16 16 C 1.37590 * 120.57471 * 359.97438 * 15 14 13 17 17 C 1.40706 * 119.87957 * 359.70199 * 16 15 14 18 18 C 1.40892 * 120.32978 * 180.29965 * 17 16 15 19 19 H 1.08001 * 119.99992 * 146.08273 * 18 17 16 20 20 C 1.40278 * 120.00040 * 326.08409 * 18 17 16 21 21 N 1.30626 * 119.99470 * 350.69136 * 20 18 17 22 22 Si 1.86794 * 120.00092 * 170.68635 * 20 18 17 23 23 H 1.48500 * 109.47131 * 90.00087 * 22 20 18 24 24 H 1.48498 * 109.47036 * 210.00455 * 22 20 18 25 25 H 1.48503 * 109.47313 * 330.00055 * 22 20 18 26 26 H 1.08000 * 120.00269 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99793 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.00269 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47044 * 5.00313 * 3 2 1 30 30 H 1.08993 * 109.47490 * 245.00363 * 3 2 1 31 31 H 1.09007 * 109.46634 * 60.00427 * 4 3 2 32 32 H 1.08993 * 109.47559 * 300.00685 * 4 3 2 33 33 H 1.08995 * 109.47057 * 65.00434 * 7 5 4 34 34 H 1.09004 * 109.46982 * 184.99947 * 7 5 4 35 35 H 0.96708 * 114.00264 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00344 * 24.99873 * 9 5 4 37 37 H 1.07995 * 119.95769 * 359.97438 * 13 12 10 38 38 H 1.07996 * 119.66046 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.71143 * 179.97438 * 15 14 13 40 40 H 1.08004 * 120.06104 * 179.97438 * 16 15 14 41 41 H 0.97004 * 119.99289 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6580 1.1814 6 1 4.2865 2.7965 0.2156 7 6 4.8584 2.6360 2.2864 8 8 4.2346 2.3386 3.5371 9 7 2.8669 3.7613 1.4210 10 6 3.1629 5.0014 0.9840 11 8 4.2048 5.2044 0.3904 12 6 2.2207 6.1105 1.2197 13 6 0.9743 5.8639 1.7890 14 6 0.0942 6.9068 2.0087 15 6 0.4378 8.2076 1.6665 16 6 1.6622 8.4826 1.1023 17 6 2.5791 7.4400 0.8744 18 6 3.8380 7.7117 0.3030 19 1 4.7013 7.1342 0.5989 20 6 3.9700 8.7324 -0.6502 21 7 2.9056 9.3077 -1.1426 22 14 5.6677 9.2689 -1.2151 23 1 6.0774 8.4587 -2.3902 24 1 5.6332 10.7050 -1.5916 25 1 6.6422 9.0696 -0.1124 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4028 -0.9313 31 1 3.7400 0.5066 1.0921 32 1 2.4772 1.2356 2.1130 33 1 5.6031 1.8726 2.0612 34 1 5.3432 3.6105 2.3447 35 1 4.8471 2.3086 4.2849 36 1 2.0357 3.5993 1.8941 37 1 0.6948 4.8564 2.0594 38 1 -0.8710 6.7076 2.4504 39 1 -0.2620 9.0107 1.8447 40 1 1.9208 9.4976 0.8389 41 1 2.9969 10.0133 -1.8020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601623039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:56 Heat of formation + Delta-G solvation = -59.608423 kcal Electronic energy + Delta-G solvation = -22934.540313 eV Core-core repulsion = 19586.111016 eV Total energy + Delta-G solvation = -3348.429297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.24672 -37.54701 -36.35333 -35.68871 -33.93413 -33.46413 -31.06867 -29.84115 -29.23519 -27.77459 -25.37485 -23.67754 -22.41052 -21.06868 -20.21515 -19.75417 -19.39643 -17.46200 -17.29630 -16.24054 -15.69480 -15.32732 -15.18308 -14.63028 -14.24022 -14.02939 -13.70762 -13.51207 -13.29331 -13.10246 -12.70662 -12.67603 -12.32720 -11.97234 -11.62566 -11.50820 -11.28609 -11.08815 -10.92580 -10.90416 -10.66432 -10.58704 -10.48978 -10.05143 -9.84917 -9.64147 -9.33320 -9.23924 -8.36768 -8.29502 -7.55004 -7.32515 -6.77132 -4.35558 2.26252 2.39877 2.84031 3.10728 3.17798 3.25236 3.98124 3.99362 4.17886 4.48754 4.70398 4.72739 5.02667 5.15498 5.32774 5.34305 5.50577 5.63012 5.69153 5.78325 5.84112 5.90983 6.02027 6.05521 6.10520 6.26274 6.32649 6.40296 6.61132 6.67495 6.77201 6.99165 7.13304 7.21262 7.28823 7.49908 7.66421 7.72576 7.92678 8.01903 8.21154 8.45663 8.69461 8.85456 8.93096 9.45746 10.18279 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.004915 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.252366 B = 5695.011311 C = 6378.838218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.098 4.098 4 C -0.113 4.113 5 C 0.152 3.848 6 H 0.095 0.905 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.734 5.734 10 C 0.566 3.434 11 O -0.543 6.543 12 C -0.261 4.261 13 C -0.056 4.056 14 C -0.246 4.246 15 C -0.096 4.096 16 C -0.149 4.149 17 C 0.146 3.854 18 C -0.416 4.416 19 H 0.104 0.896 20 C 0.069 3.931 21 N -0.794 5.794 22 Si 0.917 3.083 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.260 1.260 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.373 0.627 36 H 0.394 0.606 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 -12.323 4.012 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.136 4.136 4 C -0.151 4.151 5 C 0.046 3.954 6 H 0.113 0.887 7 C -0.016 4.016 8 O -0.372 6.372 9 N -0.388 5.388 10 C 0.360 3.640 11 O -0.422 6.422 12 C -0.265 4.265 13 C -0.075 4.075 14 C -0.265 4.265 15 C -0.115 4.115 16 C -0.168 4.168 17 C 0.142 3.858 18 C -0.444 4.444 19 H 0.122 0.878 20 C -0.149 4.149 21 N -0.419 5.419 22 Si 0.742 3.258 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.184 1.184 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.218 0.782 36 H 0.228 0.772 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.135 0.865 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.293 -12.006 3.005 12.380 hybrid contribution 0.648 0.153 0.177 0.689 sum 0.940 -11.853 3.183 12.309 Atomic orbital electron populations 1.23861 0.96064 1.01741 1.01971 1.22984 0.96027 0.98471 0.99225 1.20821 0.98637 0.95305 0.98798 1.21679 0.98295 0.96245 0.98891 1.20872 0.90417 0.86781 0.97301 0.88690 1.22701 0.95006 0.99350 0.84512 1.86472 1.39044 1.94214 1.17513 1.45986 1.23391 1.08015 1.61445 1.18433 0.86308 0.81745 0.77532 1.90662 1.26486 1.83071 1.41952 1.19474 0.95722 0.93113 1.18238 1.20658 0.93524 0.96550 0.96760 1.20282 0.99779 0.93520 1.12961 1.20797 0.96436 0.95419 0.98812 1.21349 0.94322 0.99381 1.01761 1.17480 0.92443 0.88814 0.87079 1.20133 0.96138 1.11481 1.16687 0.87838 1.26109 0.98734 0.94220 0.95796 1.69722 1.30690 1.19570 1.21960 0.86161 0.82130 0.77668 0.79876 1.19360 1.20348 1.18389 0.88452 0.88851 0.87725 0.90914 0.90983 0.91153 0.90653 0.93696 0.92787 0.78152 0.77172 0.89276 0.89165 0.89145 0.86499 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 14.32 29.01 0.42 -1.67 16 2 C -0.15 -1.60 9.52 -36.02 -0.34 -1.95 16 3 C -0.10 -1.20 5.54 -27.88 -0.15 -1.36 16 4 C -0.11 -1.37 4.45 -26.73 -0.12 -1.49 16 5 C 0.15 2.29 2.37 -67.93 -0.16 2.13 16 6 H 0.10 1.56 7.58 -51.93 -0.39 1.16 16 7 C 0.06 0.88 6.85 37.16 0.25 1.13 16 8 O -0.57 -7.35 12.83 -35.23 -0.45 -7.80 16 9 N -0.73 -13.12 4.43 -54.88 -0.24 -13.37 16 10 C 0.57 13.00 7.68 -12.52 -0.10 12.91 16 11 O -0.54 -14.01 13.26 5.27 0.07 -13.94 16 12 C -0.26 -6.41 5.92 -104.37 -0.62 -7.03 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.59 16 14 C -0.25 -5.32 10.03 -39.37 -0.39 -5.71 16 15 C -0.10 -2.19 10.01 -39.60 -0.40 -2.58 16 16 C -0.15 -3.82 8.62 -38.89 -0.34 -4.15 16 17 C 0.15 3.94 5.51 -106.54 -0.59 3.35 16 18 C -0.42 -11.47 7.67 -37.81 -0.29 -11.76 16 19 H 0.10 2.94 5.94 -52.49 -0.31 2.63 16 20 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 21 N -0.79 -20.73 11.13 55.56 0.62 -20.11 16 22 Si 0.92 19.74 29.57 -169.99 -5.03 14.71 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 H 0.10 1.05 7.84 -52.49 -0.41 0.64 16 27 H 0.09 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.10 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.07 0.99 7.40 -51.93 -0.38 0.61 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.37 3.23 9.12 45.56 0.42 3.64 16 36 H 0.39 6.51 6.67 -40.82 -0.27 6.24 16 37 H 0.09 1.63 6.44 -52.49 -0.34 1.30 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.12 3.06 6.58 -52.48 -0.35 2.71 16 41 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -30.39 344.18 -8.09 -38.48 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -4.96 Total: 14.90 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -3.29 Total: -18.06 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.38 Total: -33.48 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.38 Total: -21.74 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.39 -8.09 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601623039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.127 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds