Wall clock time and date at job start Tue Mar 31 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 113.08338 * 2 1 4 4 C 1.34778 * 119.99675 * 48.09380 * 3 2 1 5 5 O 1.21278 * 120.00254 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99850 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.46970 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46653 * 305.36068 * 7 6 4 9 9 C 1.50695 * 109.47348 * 65.36788 * 7 6 4 10 10 H 1.08001 * 120.00278 * 34.61977 * 9 7 6 11 11 C 1.37882 * 119.99666 * 214.62249 * 9 7 6 12 12 N 1.31516 * 119.99671 * 186.44867 * 11 9 7 13 13 Si 1.86802 * 120.00091 * 6.44365 * 11 9 7 14 14 H 1.48495 * 109.47134 * 85.01272 * 13 11 9 15 15 H 1.48499 * 109.47065 * 205.01220 * 13 11 9 16 16 H 1.48498 * 109.47078 * 325.01292 * 13 11 9 17 17 C 1.50703 * 109.46831 * 185.36996 * 7 6 4 18 18 C 1.38239 * 119.99554 * 296.35146 * 17 7 6 19 19 C 1.38238 * 119.99530 * 179.80896 * 18 17 7 20 20 C 1.38232 * 120.00129 * 0.40430 * 19 18 17 21 21 C 1.38237 * 120.00161 * 359.84951 * 20 19 18 22 22 C 1.38228 * 120.00302 * 116.62996 * 17 7 6 23 23 C 1.54033 * 113.81492 * 228.09354 * 2 1 3 24 24 O 1.44174 * 85.66299 * 268.29030 * 23 2 1 25 25 C 1.44437 * 93.22906 * 335.92929 * 24 23 2 26 26 H 1.08999 * 109.47264 * 191.89988 * 1 2 3 27 27 H 1.08998 * 109.47261 * 311.90739 * 1 2 3 28 28 H 1.09001 * 109.46940 * 71.90619 * 1 2 3 29 29 H 0.96999 * 120.00280 * 228.08853 * 3 2 1 30 30 H 1.09007 * 109.46937 * 299.99903 * 6 4 3 31 31 H 1.08993 * 109.47135 * 59.99701 * 6 4 3 32 32 H 0.97001 * 119.99660 * 179.97438 * 12 11 9 33 33 H 1.07994 * 120.00620 * 0.02562 * 18 17 7 34 34 H 1.07998 * 120.00050 * 180.22586 * 19 18 17 35 35 H 1.07998 * 120.00394 * 179.83086 * 20 19 18 36 36 H 1.07996 * 120.00508 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99878 * 359.97362 * 22 17 7 38 38 H 1.09007 * 113.86716 * 22.50376 * 23 2 1 39 39 H 1.09006 * 113.86536 * 154.07933 * 23 2 1 40 40 H 1.09008 * 113.74423 * 269.91477 * 25 24 23 41 41 H 1.08997 * 114.05632 * 138.26834 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1044 1.3477 0.0000 4 6 1.6514 2.2732 0.8687 5 8 0.7686 1.9903 1.6507 6 6 2.2426 3.6594 0.8691 7 6 1.5565 4.5061 1.9431 8 1 0.4781 4.4881 1.7858 9 6 1.8752 3.9449 3.3048 10 1 2.8422 3.5026 3.4939 11 6 0.9321 3.9960 4.3094 12 7 1.2506 3.6234 5.5298 13 14 -0.7978 4.5943 3.9369 14 1 -1.6129 3.4639 3.4242 15 1 -1.4153 5.1269 5.1780 16 1 -0.7404 5.6678 2.9125 17 6 2.0532 5.9263 1.8562 18 6 3.3846 6.2089 2.0983 19 6 3.8409 7.5111 2.0148 20 6 2.9643 8.5317 1.6974 21 6 1.6319 8.2498 1.4605 22 6 1.1763 6.9471 1.5402 23 6 2.1520 -0.9412 -1.0488 24 8 2.1472 -1.9325 -0.0019 25 6 2.1519 -0.9413 1.0487 26 1 -0.3634 -1.0056 0.2119 27 1 -0.3634 0.6864 0.7648 28 1 -0.3633 0.3192 -0.9769 29 1 2.8108 1.5739 -0.6251 30 1 3.3101 3.5991 1.0815 31 1 2.0920 4.1190 -0.1076 32 1 0.5873 3.6597 6.2366 33 1 4.0688 5.4120 2.3492 34 1 4.8818 7.7315 2.2003 35 1 3.3202 9.5494 1.6348 36 1 0.9469 9.0472 1.2129 37 1 0.1353 6.7268 1.3551 38 1 1.4876 -1.1751 -1.8807 39 1 3.1503 -0.6446 -1.3707 40 1 3.1512 -0.6459 1.3690 41 1 1.4883 -1.1734 1.8816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601798971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:07 Heat of formation + Delta-G solvation = -21.669908 kcal Electronic energy + Delta-G solvation = -23277.451455 eV Core-core repulsion = 19930.667295 eV Total energy + Delta-G solvation = -3346.784160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84714 -38.97055 -38.18963 -34.36513 -33.70719 -31.72268 -30.50485 -30.20423 -28.68957 -26.65959 -26.27436 -25.62589 -22.71918 -21.90235 -20.67160 -19.26104 -19.19377 -17.07893 -16.95897 -16.60456 -15.99218 -15.95717 -15.40271 -14.63228 -14.51873 -14.05986 -13.97218 -13.48194 -13.31854 -12.80478 -12.72527 -12.58121 -12.35953 -12.28100 -12.00372 -11.88786 -11.77221 -11.42169 -11.13902 -10.78763 -10.77682 -10.55630 -10.35902 -9.89644 -9.80294 -9.62120 -9.20667 -8.82387 -8.67906 -8.40083 -8.21747 -7.82938 -6.00139 -3.96924 2.08708 2.13591 3.33247 3.41497 3.45595 3.49461 3.51262 3.64161 4.25348 4.51190 4.56880 4.83029 5.04919 5.24944 5.27749 5.48258 5.50900 5.54568 5.55610 5.67874 5.82333 5.87335 5.88170 5.91214 5.96918 5.99870 6.06884 6.09441 6.23037 6.31274 6.51566 6.57754 6.68273 6.81473 6.83680 6.99098 7.13324 7.25712 7.55773 7.70754 7.81011 7.95210 8.50911 8.92654 8.99242 9.65082 11.12669 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016799 B = 0.005276 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.379987 B = 5306.032794 C = 6147.789780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.740 5.740 4 C 0.517 3.483 5 O -0.493 6.493 6 C -0.119 4.119 7 C 0.057 3.943 8 H 0.049 0.951 9 C -0.488 4.488 10 H 0.070 0.930 11 C 0.086 3.914 12 N -0.898 5.898 13 Si 0.873 3.127 14 H -0.273 1.273 15 H -0.297 1.297 16 H -0.261 1.261 17 C -0.038 4.038 18 C -0.102 4.102 19 C -0.127 4.127 20 C -0.149 4.149 21 C -0.126 4.126 22 C -0.136 4.136 23 C 0.034 3.966 24 O -0.379 6.379 25 C 0.030 3.970 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.396 0.604 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.262 0.738 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 -0.864 -14.216 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 N -0.397 5.397 4 C 0.304 3.696 5 O -0.365 6.365 6 C -0.159 4.159 7 C 0.037 3.963 8 H 0.067 0.933 9 C -0.525 4.525 10 H 0.089 0.911 11 C -0.117 4.117 12 N -0.536 5.536 13 Si 0.702 3.298 14 H -0.198 1.198 15 H -0.224 1.224 16 H -0.186 1.186 17 C -0.039 4.039 18 C -0.120 4.120 19 C -0.146 4.146 20 C -0.168 4.168 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.044 4.044 24 O -0.296 6.296 25 C -0.047 4.047 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.211 -1.392 -13.409 13.662 hybrid contribution -0.495 0.616 -0.218 0.820 sum 1.716 -0.776 -13.627 13.757 Atomic orbital electron populations 1.22048 0.91576 1.03933 1.03902 1.23520 0.96076 0.82421 0.94877 1.46260 1.41609 1.11568 1.40222 1.20865 0.82772 0.86709 0.79259 1.90655 1.29287 1.80043 1.36511 1.21702 1.01691 0.92130 1.00374 1.18115 0.96128 0.86793 0.95232 0.93284 1.20565 1.01664 1.37956 0.92292 0.91145 1.24888 0.98248 0.93934 0.94612 1.69897 1.34576 1.48256 1.00830 0.86928 0.85911 0.79560 0.77444 1.19818 1.22363 1.18629 1.20740 0.93002 0.97694 0.92481 1.20954 0.96021 0.95884 0.99104 1.21050 0.98929 0.93447 1.01130 1.20860 0.93940 0.98310 1.03658 1.20967 0.95568 0.96315 1.01599 1.21149 0.99431 0.92856 1.01995 1.24365 1.00479 0.86724 0.92798 1.89724 1.95748 1.27051 1.17124 1.24602 1.01341 0.85932 0.92872 0.91547 0.87848 0.92457 0.77042 0.89726 0.91335 0.92842 0.86312 0.87212 0.87445 0.87401 0.87051 0.88759 0.90010 0.89724 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.05 37.16 0.34 -1.89 16 2 C 0.12 1.58 1.35 -130.74 -0.18 1.41 16 3 N -0.74 -10.03 5.35 -53.30 -0.29 -10.31 16 4 C 0.52 9.37 7.35 -10.98 -0.08 9.29 16 5 O -0.49 -11.19 12.47 5.56 0.07 -11.12 16 6 C -0.12 -2.08 4.94 -27.88 -0.14 -2.22 16 7 C 0.06 1.25 1.28 -92.92 -0.12 1.13 16 8 H 0.05 1.15 4.79 -51.93 -0.25 0.90 16 9 C -0.49 -13.03 6.94 -34.44 -0.24 -13.27 16 10 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 11 C 0.09 2.47 5.47 -17.82 -0.10 2.37 16 12 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 13 Si 0.87 22.43 27.04 -169.99 -4.60 17.83 16 14 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 16 H -0.26 -6.22 5.15 56.52 0.29 -5.93 16 17 C -0.04 -0.79 4.77 -104.62 -0.50 -1.29 16 18 C -0.10 -1.93 8.87 -39.58 -0.35 -2.28 16 19 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 20 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 21 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 22 C -0.14 -2.63 9.13 -39.59 -0.36 -2.99 16 23 C 0.03 0.36 8.49 37.61 0.32 0.68 16 24 O -0.38 -5.28 12.41 -35.23 -0.44 -5.72 16 25 C 0.03 0.44 8.55 37.61 0.32 0.76 16 26 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 27 H 0.10 1.84 5.40 -51.93 -0.28 1.56 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.40 3.99 8.63 -40.82 -0.35 3.64 16 30 H 0.08 1.39 7.80 -51.92 -0.41 0.98 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.12 2.23 7.77 -52.49 -0.41 1.82 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 2.12 6.96 -52.48 -0.37 1.76 16 38 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.08 0.70 8.11 -51.93 -0.42 0.28 16 40 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.10 1.50 8.10 -51.93 -0.42 1.08 16 LS Contribution 335.59 15.07 5.06 5.06 Total: -1.00 -32.91 335.59 -7.64 -40.55 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.94 Total: 6.80 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -2.28 Total: -16.17 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.49 Total: -37.23 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.37 Total: -16.84 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.60 Total: 17.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.91 -7.64 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601798971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.883 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds