Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 113.00128 * 2 1 4 4 C 1.34779 * 119.99470 * 48.45345 * 3 2 1 5 5 O 1.21281 * 120.00183 * 359.72454 * 4 3 2 6 6 C 1.50700 * 119.99975 * 179.72725 * 4 3 2 7 7 C 1.52998 * 109.47458 * 179.97438 * 6 4 3 8 8 H 1.09004 * 109.46972 * 54.99704 * 7 6 4 9 9 C 1.50701 * 109.47353 * 294.99993 * 7 6 4 10 10 H 1.08006 * 119.99705 * 121.35910 * 9 7 6 11 11 C 1.37871 * 119.99983 * 301.36777 * 9 7 6 12 12 N 1.31520 * 120.00158 * 6.17492 * 11 9 7 13 13 Si 1.86797 * 120.00019 * 186.18167 * 11 9 7 14 14 H 1.48493 * 109.47231 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47417 * 119.99644 * 13 11 9 16 16 H 1.48499 * 109.47019 * 239.99264 * 13 11 9 17 17 C 1.50698 * 109.47623 * 174.99719 * 7 6 4 18 18 C 1.38234 * 120.00390 * 211.37589 * 17 7 6 19 19 C 1.38234 * 120.00116 * 179.78929 * 18 17 7 20 20 C 1.38237 * 119.99606 * 0.43636 * 19 18 17 21 21 C 1.38229 * 120.00187 * 359.81489 * 20 19 18 22 22 C 1.38232 * 120.00040 * 359.97438 * 21 20 19 23 23 C 1.54038 * 113.93003 * 131.93744 * 2 1 3 24 24 O 1.44182 * 85.51624 * 91.65859 * 23 2 1 25 25 C 1.44172 * 93.33976 * 24.19381 * 24 23 2 26 26 H 1.08997 * 109.47766 * 69.66353 * 1 2 3 27 27 H 1.09008 * 109.46895 * 189.66525 * 1 2 3 28 28 H 1.09001 * 109.47254 * 309.65853 * 1 2 3 29 29 H 0.97000 * 120.00821 * 228.17885 * 3 2 1 30 30 H 1.08998 * 109.46995 * 299.99902 * 6 4 3 31 31 H 1.09005 * 109.47505 * 59.99749 * 6 4 3 32 32 H 0.96997 * 119.99820 * 180.02562 * 12 11 9 33 33 H 1.08000 * 119.99568 * 0.02562 * 18 17 7 34 34 H 1.07995 * 119.99873 * 180.27515 * 19 18 17 35 35 H 1.08004 * 119.99600 * 179.83560 * 20 19 18 36 36 H 1.08002 * 119.99861 * 179.97438 * 21 20 19 37 37 H 1.08005 * 119.99976 * 179.97438 * 22 21 20 38 38 H 1.08996 * 113.86263 * 205.80909 * 23 2 1 39 39 H 1.08997 * 113.86341 * 337.51268 * 23 2 1 40 40 H 1.09001 * 113.86318 * 221.65588 * 25 24 23 41 41 H 1.09005 * 113.98476 * 89.96802 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1024 1.3485 0.0000 4 6 1.6531 2.2712 0.8736 5 8 0.7714 1.9867 1.6563 6 6 2.2461 3.6566 0.8778 7 6 1.5634 4.5005 1.9561 8 1 1.6393 3.9922 2.9174 9 6 0.1110 4.6897 1.6013 10 1 -0.6589 4.3562 2.2814 11 6 -0.2349 5.2883 0.4085 12 7 0.6954 5.5840 -0.4730 13 14 -2.0247 5.6797 0.0444 14 1 -2.8680 5.2502 1.1887 15 1 -2.1793 7.1419 -0.1637 16 1 -2.4497 4.9576 -1.1817 17 6 2.2382 5.8450 2.0441 18 6 2.2966 6.5113 3.2539 19 6 2.9194 7.7427 3.3355 20 6 3.4761 8.3118 2.2054 21 6 3.4132 7.6479 0.9946 22 6 2.7941 6.4146 0.9139 23 6 2.1548 -0.9410 1.0474 24 8 2.1471 -1.9296 -0.0021 25 6 2.1520 -0.9397 -1.0502 26 1 -0.3634 0.3571 -0.9635 27 1 -0.3633 -1.0132 0.1726 28 1 -0.3634 0.6559 0.7912 29 1 2.8076 1.5762 -0.6260 30 1 3.3140 3.5941 1.0870 31 1 2.0934 4.1203 -0.0968 32 1 0.4520 6.0055 -1.3120 33 1 1.8589 6.0680 4.1361 34 1 2.9689 8.2611 4.2816 35 1 3.9604 9.2751 2.2686 36 1 3.8477 8.0929 0.1116 37 1 2.7446 5.8961 -0.0322 38 1 3.1539 -0.6442 1.3664 39 1 1.4918 -1.1764 1.8799 40 1 1.4868 -1.1741 -1.8813 41 1 3.1494 -0.6413 -1.3733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601798974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -17.749861 kcal Electronic energy + Delta-G solvation = -23488.235462 eV Core-core repulsion = 20141.621289 eV Total energy + Delta-G solvation = -3346.614174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77572 -38.72557 -37.88120 -34.41178 -33.59794 -31.16036 -30.29636 -29.79093 -28.21252 -26.62464 -26.16148 -25.59419 -22.70879 -21.50355 -20.42704 -19.25094 -19.09892 -17.04426 -16.52455 -16.04047 -15.95527 -15.72842 -15.19042 -14.92523 -14.04854 -13.87334 -13.83506 -13.38249 -13.12930 -12.85156 -12.53117 -12.25326 -12.05249 -11.86416 -11.75315 -11.56136 -11.39954 -11.27575 -10.95463 -10.80913 -10.70613 -10.39089 -10.21287 -9.97835 -9.76266 -9.32262 -9.20696 -8.65469 -8.48288 -8.39743 -7.82833 -7.46783 -6.02835 -4.10475 2.45972 2.54814 3.27177 3.35666 3.41906 3.55845 3.65931 3.79928 4.34883 4.40588 4.92818 4.94267 5.14504 5.21447 5.27009 5.56472 5.70703 5.78586 5.87894 5.89368 5.97534 6.00897 6.02407 6.11260 6.16327 6.35046 6.43462 6.58182 6.68403 6.72186 6.75511 7.02665 7.11396 7.14670 7.25458 7.46467 7.51590 7.67752 7.93587 8.05884 8.16385 8.21491 8.33043 8.87611 9.17626 9.53291 10.91822 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.005332 C = 0.004521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.688407 B = 5250.223027 C = 6192.457633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.119 3.881 3 N -0.740 5.740 4 C 0.528 3.472 5 O -0.522 6.522 6 C -0.141 4.141 7 C 0.088 3.912 8 H 0.036 0.964 9 C -0.468 4.468 10 H 0.061 0.939 11 C 0.060 3.940 12 N -0.890 5.890 13 Si 0.891 3.109 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.286 1.286 17 C -0.032 4.032 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.076 4.076 23 C 0.029 3.971 24 O -0.379 6.379 25 C 0.032 3.968 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.396 0.604 30 H 0.050 0.950 31 H 0.137 0.863 32 H 0.260 0.740 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 -5.582 -1.709 8.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 N -0.396 5.396 4 C 0.318 3.682 5 O -0.396 6.396 6 C -0.181 4.181 7 C 0.069 3.931 8 H 0.055 0.945 9 C -0.506 4.506 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.213 1.213 17 C -0.032 4.032 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.172 4.172 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.049 4.049 24 O -0.297 6.297 25 C -0.045 4.045 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.230 0.770 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.166 0.834 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.554 -5.996 -1.293 8.275 hybrid contribution -0.706 0.786 -0.729 1.283 sum 4.847 -5.210 -2.022 7.398 Atomic orbital electron populations 1.22033 0.91539 1.03112 1.04651 1.23489 0.96169 0.82782 0.94373 1.46318 1.41730 1.11330 1.40258 1.21176 0.81907 0.86438 0.78688 1.90521 1.29643 1.80028 1.39417 1.22033 0.96830 0.91068 1.08198 1.17632 0.94240 0.87608 0.93609 0.94519 1.21047 0.90770 1.35788 1.02958 0.92104 1.24866 0.97284 0.95649 0.96141 1.69538 1.31655 1.43492 1.08347 0.86528 0.85553 0.77851 0.78128 1.19823 1.21139 1.21285 1.20365 0.92228 0.98743 0.91895 1.20926 1.00638 0.95478 0.97911 1.20805 1.01352 0.96453 0.97468 1.20788 1.03168 0.99436 0.93762 1.21087 1.01788 0.96918 0.96467 1.21624 0.93621 0.94638 0.99559 1.24545 1.00878 0.86487 0.93011 1.89657 1.95701 1.27173 1.17122 1.24394 1.00581 0.86684 0.92841 0.92313 0.91998 0.87656 0.77023 0.93142 0.84546 0.92935 0.87633 0.88065 0.88288 0.88068 0.83409 0.90072 0.88709 0.88712 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.02 37.16 0.33 -2.11 16 2 C 0.12 1.72 1.35 -130.74 -0.18 1.54 16 3 N -0.74 -11.43 5.35 -53.75 -0.29 -11.72 16 4 C 0.53 10.47 7.35 -10.98 -0.08 10.39 16 5 O -0.52 -11.96 12.48 5.56 0.07 -11.89 16 6 C -0.14 -2.89 4.22 -27.88 -0.12 -3.00 16 7 C 0.09 2.05 1.98 -92.92 -0.18 1.87 16 8 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 9 C -0.47 -12.19 7.27 -34.44 -0.25 -12.44 16 10 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 11 C 0.06 1.53 5.14 -17.82 -0.09 1.44 16 12 N -0.89 -21.96 7.74 55.43 0.43 -21.53 16 13 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.03 -0.71 4.68 -104.63 -0.49 -1.20 16 18 C -0.13 -2.75 9.70 -39.58 -0.38 -3.13 16 19 C -0.14 -2.69 10.05 -39.58 -0.40 -3.09 16 20 C -0.15 -2.84 10.05 -39.59 -0.40 -3.23 16 21 C -0.14 -2.82 10.05 -39.59 -0.40 -3.21 16 22 C -0.08 -1.63 7.56 -39.59 -0.30 -1.93 16 23 C 0.03 0.40 8.57 37.61 0.32 0.72 16 24 O -0.38 -5.33 12.38 -35.23 -0.44 -5.76 16 25 C 0.03 0.38 8.50 37.61 0.32 0.70 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.87 8.06 -51.92 -0.42 0.45 16 28 H 0.10 2.02 5.46 -51.93 -0.28 1.74 16 29 H 0.40 5.03 8.63 -40.82 -0.35 4.67 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.14 2.98 4.65 -51.93 -0.24 2.73 16 32 H 0.26 6.30 8.31 -40.82 -0.34 5.96 16 33 H 0.11 2.09 8.06 -52.49 -0.42 1.66 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.10 1.56 8.06 -52.48 -0.42 1.13 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.15 3.25 4.97 -52.48 -0.26 2.99 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 40 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -28.18 331.02 -8.28 -36.46 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.73 Total: 10.11 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.29 Total: -16.69 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.14 Total: -33.25 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.37 Total: -17.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.18 -8.28 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601798974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.708 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds