Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47186 * 2 1 4 4 N 1.46502 * 110.45422 * 299.31634 * 3 2 1 5 5 C 1.34774 * 120.00214 * 296.83430 * 4 3 2 6 6 O 1.21541 * 119.99959 * 354.87497 * 5 4 3 7 7 C 1.47887 * 119.99669 * 174.87781 * 5 4 3 8 8 C 1.39917 * 120.02875 * 0.02562 * 7 5 4 9 9 C 1.38328 * 120.35888 * 179.97438 * 8 7 5 10 10 C 1.37753 * 120.41441 * 359.97438 * 9 8 7 11 11 C 1.40755 * 120.03618 * 0.04158 * 10 9 8 12 12 C 1.41433 * 120.17645 * 179.97438 * 11 10 9 13 13 H 1.08008 * 120.00129 * 329.02922 * 12 11 10 14 14 C 1.39938 * 120.00039 * 149.02271 * 12 11 10 15 15 N 1.30831 * 120.00032 * 347.41758 * 14 12 11 16 16 Si 1.86802 * 120.00020 * 167.41537 * 14 12 11 17 17 H 1.48502 * 109.46870 * 90.00434 * 16 14 12 18 18 H 1.48497 * 109.46902 * 210.00230 * 16 14 12 19 19 H 1.48501 * 109.47125 * 329.99981 * 16 14 12 20 20 C 1.38995 * 120.02146 * 179.97438 * 7 5 4 21 21 C 1.54508 * 110.51431 * 176.71658 * 3 2 1 22 22 C 1.54480 * 104.06295 * 241.21647 * 21 3 2 23 23 O 1.44420 * 104.80340 * 336.02055 * 22 21 3 24 24 C 1.44791 * 105.29803 * 40.54627 * 23 22 21 25 25 H 1.08997 * 109.47600 * 294.78815 * 1 2 3 26 26 H 1.09001 * 109.46852 * 54.79359 * 1 2 3 27 27 H 1.09004 * 109.47003 * 174.78923 * 1 2 3 28 28 H 1.09005 * 109.47729 * 239.99609 * 2 1 3 29 29 H 1.09003 * 109.46899 * 119.99732 * 2 1 3 30 30 H 0.97007 * 119.99490 * 116.83428 * 4 3 2 31 31 H 1.07998 * 119.81838 * 359.97438 * 8 7 5 32 32 H 1.08002 * 119.79493 * 179.97438 * 9 8 7 33 33 H 1.07996 * 119.97898 * 180.02562 * 10 9 8 34 34 H 0.96998 * 120.00065 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.20414 * 359.75105 * 20 7 5 36 36 H 1.09000 * 110.50962 * 359.85740 * 21 3 2 37 37 H 1.08996 * 110.51537 * 122.56724 * 21 3 2 38 38 H 1.09006 * 110.37338 * 94.84616 * 22 21 3 39 39 H 1.08991 * 110.37567 * 217.18854 * 22 21 3 40 40 H 1.09001 * 110.48963 * 200.67964 * 24 23 22 41 41 H 1.08998 * 110.42502 * 78.21955 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5770 2.1492 -1.1969 5 6 1.9706 1.7362 -2.4179 6 8 2.7821 0.8375 -2.5231 7 6 1.4151 2.3767 -3.6296 8 6 0.4813 3.4117 -3.5091 9 6 -0.0422 4.0159 -4.6380 10 6 0.3496 3.6063 -5.8935 11 6 1.2877 2.5665 -6.0345 12 6 1.6917 2.1432 -7.3222 13 1 1.0031 2.2056 -8.1519 14 6 2.9837 1.6438 -7.5212 15 7 3.8928 1.7926 -6.5922 16 14 3.4103 0.7647 -9.1133 17 1 3.9069 1.7514 -10.1057 18 1 4.4643 -0.2482 -8.8522 19 1 2.1988 0.0922 -9.6473 20 6 1.8211 1.9515 -4.8892 21 6 3.5825 1.4714 0.0829 22 6 3.8737 2.2248 1.3997 23 8 2.6963 3.0279 1.6334 24 6 1.5784 2.1798 1.2766 25 1 -0.3634 0.4308 0.9329 26 1 -0.3633 0.5925 -0.8397 27 1 -0.3633 -1.0235 -0.0933 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.9871 2.9144 -1.1104 31 1 0.1677 3.7406 -2.5295 32 1 -0.7628 4.8137 -4.5344 33 1 -0.0633 4.0832 -6.7700 34 1 4.7883 1.4461 -6.7300 35 1 2.5452 1.1563 -4.9869 36 1 3.9817 0.4580 0.1264 37 1 4.0007 2.0114 -0.7666 38 1 4.0192 1.5182 2.2169 39 1 4.7510 2.8615 1.2867 40 1 0.6940 2.7819 1.0682 41 1 1.3730 1.4656 2.0740 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616689461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -70.563403 kcal Electronic energy + Delta-G solvation = -23306.433966 eV Core-core repulsion = 19957.529625 eV Total energy + Delta-G solvation = -3348.904341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -40.43523 -38.50997 -36.98068 -35.01538 -33.72020 -32.20860 -30.69270 -29.86438 -29.44763 -27.95878 -25.30048 -24.06414 -22.90222 -22.20885 -21.00662 -20.10799 -19.01499 -17.75929 -16.73816 -16.12360 -15.77121 -15.53315 -15.10904 -14.71663 -14.66868 -14.22336 -13.93163 -13.41522 -13.31907 -13.16145 -12.80642 -12.57588 -12.46978 -12.11234 -11.74787 -11.62900 -11.53061 -11.15536 -11.11114 -11.07540 -10.81602 -10.74517 -10.62902 -10.49383 -9.99980 -9.85219 -9.68857 -9.24076 -8.95085 -8.66056 -7.63972 -7.48119 -6.75661 -4.43117 2.18361 2.80498 3.08569 3.10932 3.14701 3.58140 3.83163 3.85830 3.94309 4.50511 4.66316 4.76000 4.85626 5.09319 5.17341 5.27400 5.36075 5.41886 5.56337 5.58142 5.67562 5.74173 5.76651 5.92200 6.01166 6.07355 6.22631 6.25649 6.26108 6.36413 6.66213 6.69058 6.91997 6.99169 6.99962 7.20819 7.36931 7.67283 7.74131 7.89490 8.09215 8.18187 8.49664 8.81388 8.82549 8.94539 10.20659 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.004365 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.928459 B = 6412.472777 C = 6889.895450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.150 3.850 4 N -0.723 5.723 5 C 0.568 3.432 6 O -0.541 6.541 7 C -0.131 4.131 8 C -0.210 4.210 9 C -0.102 4.102 10 C -0.205 4.205 11 C 0.101 3.899 12 C -0.466 4.466 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.794 5.794 16 Si 0.910 3.090 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.084 4.084 21 C -0.152 4.152 22 C 0.043 3.957 23 O -0.374 6.374 24 C 0.046 3.954 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.283 0.717 35 H 0.131 0.869 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 -1.315 12.933 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.063 3.937 4 N -0.378 5.378 5 C 0.359 3.641 6 O -0.419 6.419 7 C -0.135 4.135 8 C -0.230 4.230 9 C -0.120 4.120 10 C -0.225 4.225 11 C 0.098 3.902 12 C -0.496 4.496 13 H 0.098 0.902 14 C -0.145 4.145 15 N -0.419 5.419 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.104 4.104 21 C -0.190 4.190 22 C -0.033 4.033 23 O -0.293 6.293 24 C -0.031 4.031 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.235 0.765 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.162 -1.804 12.988 13.290 hybrid contribution 0.047 -0.107 -0.745 0.754 sum -2.115 -1.911 12.243 12.571 Atomic orbital electron populations 1.21759 0.95479 1.01871 1.01761 1.21884 0.96387 0.94980 1.03426 1.21535 0.93843 0.92728 0.85576 1.46026 1.52607 1.34345 1.04774 1.18765 0.80236 0.82035 0.83077 1.90672 1.33224 1.30986 1.86979 1.19504 1.01355 1.00033 0.92559 1.20386 1.03959 1.02115 0.96565 1.20460 0.99424 0.99034 0.93068 1.21192 1.05525 1.00259 0.95477 1.17604 0.90101 0.89198 0.93287 1.19537 0.97672 1.37330 0.95027 0.90199 1.25908 0.96115 0.93995 0.98432 1.69763 1.03731 1.34720 1.33676 0.86276 0.79092 0.79645 0.81518 1.19493 1.20058 1.18480 1.21587 0.99682 0.99567 0.89552 1.23292 0.95176 1.02094 0.98484 1.23490 0.89361 0.94377 0.96109 1.89190 1.15209 1.37207 1.87699 1.23752 0.90853 0.93910 0.94591 0.93116 0.92022 0.92727 0.89635 0.91449 0.76501 0.89191 0.88842 0.88535 0.90609 0.85169 0.89848 0.89469 0.92371 0.89083 0.88661 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.54 37.16 0.35 -1.40 16 2 C -0.13 -1.67 4.56 -26.73 -0.12 -1.79 16 3 C 0.15 2.05 0.66 -130.25 -0.09 1.96 16 4 N -0.72 -11.63 4.29 -47.07 -0.20 -11.83 16 5 C 0.57 11.87 6.96 -12.31 -0.09 11.78 16 6 O -0.54 -12.67 13.63 5.33 0.07 -12.60 16 7 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 8 C -0.21 -4.35 9.55 -38.92 -0.37 -4.72 16 9 C -0.10 -2.14 10.01 -39.73 -0.40 -2.54 16 10 C -0.20 -4.83 9.78 -38.81 -0.38 -5.21 16 11 C 0.10 2.64 5.51 -106.87 -0.59 2.05 16 12 C -0.47 -12.25 9.04 -37.73 -0.34 -12.59 16 13 H 0.08 1.99 7.88 -52.48 -0.41 1.58 16 14 C 0.07 1.86 5.20 -17.34 -0.09 1.77 16 15 N -0.79 -21.12 11.09 55.55 0.62 -20.51 16 16 Si 0.91 18.88 29.58 -169.99 -5.03 13.86 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 20 C -0.08 -2.20 8.19 -38.44 -0.31 -2.52 16 21 C -0.15 -2.15 5.46 -25.16 -0.14 -2.28 16 22 C 0.04 0.51 7.63 37.93 0.29 0.80 16 23 O -0.37 -4.99 11.66 -35.23 -0.41 -5.40 16 24 C 0.05 0.52 5.93 37.93 0.23 0.75 16 25 H 0.05 0.48 7.42 -51.93 -0.39 0.09 16 26 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.39 6.65 -51.93 -0.35 1.05 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 5.76 6.32 -40.82 -0.26 5.50 16 31 H 0.09 1.54 6.39 -52.49 -0.34 1.20 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 35 H 0.13 3.72 6.03 -52.49 -0.32 3.40 16 36 H 0.08 1.13 7.73 -51.93 -0.40 0.72 16 37 H 0.09 1.51 7.10 -51.93 -0.37 1.14 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 0.97 7.75 -51.93 -0.40 0.56 16 41 H 0.07 0.69 7.74 -51.93 -0.40 0.28 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -29.30 330.99 -8.32 -37.62 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.69 Total: 11.46 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.66 Total: -17.58 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.41 Total: -32.34 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.34 Total: -18.00 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.30 -8.32 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616689461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.945 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds