Wall clock time and date at job start Tue Mar 31 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47211 * 2 1 4 4 C 1.53007 * 109.46912 * 119.99919 * 2 1 3 5 5 C 1.53490 * 114.20530 * 179.97438 * 4 2 1 6 6 N 1.47070 * 87.98811 * 220.34684 * 5 4 2 7 7 C 1.34767 * 136.05999 * 207.08764 * 6 5 4 8 8 O 1.21598 * 120.00204 * 355.40513 * 7 6 5 9 9 C 1.47534 * 120.00381 * 175.40537 * 7 6 5 10 10 C 1.39666 * 120.19410 * 24.87630 * 9 7 6 11 11 C 1.37828 * 119.92007 * 179.97438 * 10 9 7 12 12 C 1.38576 * 120.32302 * 0.02562 * 11 10 9 13 13 C 1.38026 * 120.40097 * 359.97438 * 12 11 10 14 14 C 1.38838 * 120.07408 * 359.97438 * 13 12 11 15 15 O 1.35519 * 120.16221 * 179.97438 * 14 13 12 16 16 C 1.34813 * 117.00048 * 5.72582 * 15 14 13 17 17 H 1.08000 * 120.00095 * 5.43058 * 16 15 14 18 18 C 1.38691 * 119.99913 * 185.43129 * 16 15 14 19 19 N 1.31524 * 120.00026 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00074 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47357 * 90.00054 * 20 18 16 22 22 H 1.48504 * 109.47207 * 209.99885 * 20 18 16 23 23 H 1.48492 * 109.47288 * 329.99899 * 20 18 16 24 24 C 1.47069 * 87.87941 * 27.34464 * 6 5 4 25 25 H 1.09005 * 109.46984 * 60.00106 * 1 2 3 26 26 H 1.09005 * 109.47381 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47554 * 300.00314 * 1 2 3 28 28 H 1.08999 * 109.47098 * 239.99413 * 2 1 3 29 29 H 1.09003 * 109.47064 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47248 * 300.00296 * 3 2 1 31 31 H 1.08998 * 109.47311 * 60.00180 * 3 2 1 32 32 H 1.08997 * 113.27882 * 313.06999 * 4 2 1 33 33 H 1.09001 * 113.47014 * 105.56648 * 5 4 2 34 34 H 1.09003 * 113.47047 * 335.12916 * 5 4 2 35 35 H 1.07997 * 120.04220 * 359.97438 * 10 9 7 36 36 H 1.07999 * 119.83756 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.80092 * 179.70434 * 12 11 10 38 38 H 1.08002 * 119.96262 * 179.97438 * 13 12 11 39 39 H 0.97002 * 119.99809 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.46846 * 87.44579 * 24 6 5 41 41 H 1.09007 * 113.46254 * 217.87770 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5696 -0.7852 1.3588 6 7 3.4253 -2.1652 1.8463 7 6 4.1348 -2.9941 2.6373 8 8 5.2189 -2.6469 3.0646 9 6 3.5961 -4.3229 2.9849 10 6 2.6680 -4.9457 2.1474 11 6 2.1689 -6.1873 2.4773 12 6 2.5830 -6.8221 3.6374 13 6 3.4996 -6.2189 4.4747 14 6 4.0139 -4.9688 4.1579 15 8 4.9135 -4.3746 4.9790 16 6 5.3583 -5.0985 6.0257 17 1 5.0654 -6.1327 6.1304 18 6 6.1920 -4.5151 6.9681 19 7 6.6255 -5.2211 7.9895 20 14 6.6992 -2.7264 6.7866 21 1 5.7158 -1.8597 7.4844 22 1 8.0441 -2.5301 7.3849 23 1 6.7410 -2.3674 5.3463 24 6 2.1692 -2.2446 1.0855 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.5389 -0.4048 2.1641 33 1 3.9805 -0.1027 2.1028 34 1 4.0770 -0.7156 0.3965 35 1 2.3418 -4.4549 1.2423 36 1 1.4516 -6.6678 1.8285 37 1 2.1828 -7.7928 3.8902 38 1 3.8170 -6.7198 5.3773 39 1 7.2083 -4.8129 8.6488 40 1 2.3073 -2.5599 0.0513 41 1 1.3868 -2.8056 1.5968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753748041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:20 Heat of formation + Delta-G solvation = -2.212685 kcal Electronic energy + Delta-G solvation = -22981.505661 eV Core-core repulsion = 19635.565230 eV Total energy + Delta-G solvation = -3345.940431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.49681 -39.22051 -37.35435 -36.50682 -34.75451 -32.45166 -30.97456 -29.22731 -28.50965 -27.64589 -25.76652 -25.21695 -23.70609 -22.09246 -21.25047 -20.06102 -19.17180 -17.97085 -17.30918 -16.53809 -15.71259 -15.60863 -15.00278 -14.68907 -14.43014 -14.02091 -13.95511 -13.77313 -13.55938 -13.30520 -13.06538 -12.70113 -12.51009 -12.37304 -12.21771 -12.18952 -12.03886 -11.51504 -11.38594 -11.24285 -11.05540 -10.87897 -10.75988 -10.74026 -10.30413 -10.06450 -9.61101 -9.08811 -8.89039 -8.44310 -8.33429 -7.47524 -6.47050 -4.11919 1.61420 2.18784 3.13081 3.29470 3.33516 3.48861 3.65093 4.13576 4.34139 4.42920 4.59781 4.67145 4.75123 4.88880 5.04219 5.07210 5.13113 5.29567 5.39412 5.40022 5.42329 5.43512 5.49784 5.60724 5.62693 5.65583 5.74604 5.81665 5.86321 5.97820 6.03678 6.07234 6.19017 6.24446 6.39716 6.59901 6.86798 7.03695 7.16053 7.48654 7.69054 7.95187 8.09493 8.80826 8.88855 9.51069 10.58451 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.004973 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.180803 B = 5629.183041 C = 7011.551200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.122 4.122 5 C 0.110 3.890 6 N -0.652 5.652 7 C 0.593 3.407 8 O -0.517 6.517 9 C -0.218 4.218 10 C -0.045 4.045 11 C -0.221 4.221 12 C -0.052 4.052 13 C -0.226 4.226 14 C 0.200 3.800 15 O -0.174 6.174 16 C -0.394 4.394 17 H 0.108 0.892 18 C 0.072 3.928 19 N -0.870 5.870 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.235 1.235 24 C 0.102 3.898 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.282 0.718 40 H 0.081 0.919 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 7.831 -15.908 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.205 4.205 4 C -0.141 4.141 5 C -0.013 4.013 6 N -0.390 5.390 7 C 0.386 3.614 8 O -0.393 6.393 9 C -0.222 4.222 10 C -0.063 4.063 11 C -0.240 4.240 12 C -0.070 4.070 13 C -0.245 4.245 14 C 0.143 3.857 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.126 0.874 18 C -0.133 4.133 19 N -0.506 5.506 20 Si 0.715 3.285 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.158 1.158 24 C -0.021 4.021 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.849 8.079 -15.263 20.943 hybrid contribution 0.226 0.404 0.151 0.487 sum -11.623 8.483 -15.112 20.867 Atomic orbital electron populations 1.21820 0.94852 1.01952 1.01744 1.21037 0.96001 0.96308 0.96932 1.21829 1.01278 0.95672 1.01770 1.23179 0.96140 0.95325 0.99455 1.22878 0.95395 0.83885 0.99098 1.49467 1.25492 1.15293 1.48771 1.17810 0.83274 0.83303 0.77026 1.90857 1.19910 1.75512 1.52971 1.18737 1.08122 0.96695 0.98689 1.20973 0.93418 0.94748 0.97210 1.20553 1.06305 0.97172 0.99985 1.20966 0.94563 0.98204 0.93293 1.21272 1.02957 0.97030 1.03283 1.19008 0.87017 0.90689 0.88960 1.83733 1.48249 1.40890 1.34641 1.20887 1.29179 0.96428 1.00404 0.87421 1.24467 0.95105 1.00217 0.93514 1.69636 1.32224 1.37576 1.11146 0.86334 0.77648 0.82760 0.81737 1.20056 1.20819 1.15762 1.23153 0.86916 0.95846 0.96198 0.92756 0.92448 0.92573 0.90818 0.92441 0.92716 0.92533 0.87793 0.90807 0.90437 0.86381 0.87002 0.86808 0.84370 0.90833 0.90120 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.08 -0.60 2.74 -90.62 -0.25 -0.85 16 3 C -0.15 -1.03 9.00 37.15 0.33 -0.69 16 4 C -0.12 -1.17 3.49 -89.97 -0.31 -1.49 16 5 C 0.11 1.40 7.26 -8.52 -0.06 1.34 16 6 N -0.65 -10.63 3.68 -186.31 -0.68 -11.32 16 7 C 0.59 12.95 7.78 -12.47 -0.10 12.85 16 8 O -0.52 -13.73 16.36 -14.86 -0.24 -13.98 16 9 C -0.22 -4.66 5.86 -104.81 -0.61 -5.28 16 10 C -0.04 -0.76 8.75 -39.20 -0.34 -1.10 16 11 C -0.22 -3.53 10.03 -39.61 -0.40 -3.93 16 12 C -0.05 -0.90 10.03 -39.53 -0.40 -1.30 16 13 C -0.23 -4.88 9.12 -39.44 -0.36 -5.24 16 14 C 0.20 4.88 6.63 -38.60 -0.26 4.62 16 15 O -0.17 -4.92 6.97 -19.34 -0.13 -5.06 16 16 C -0.39 -11.47 9.90 30.90 0.31 -11.16 16 17 H 0.11 3.12 5.53 -52.49 -0.29 2.83 16 18 C 0.07 2.11 5.49 -17.52 -0.10 2.01 16 19 N -0.87 -25.56 13.96 55.48 0.77 -24.78 16 20 Si 0.89 23.23 28.62 -169.99 -4.86 18.37 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.24 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.10 1.13 5.79 -8.38 -0.05 1.08 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 29 H 0.06 0.41 7.48 -51.93 -0.39 0.03 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.12 1.60 5.34 -52.49 -0.28 1.32 16 36 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.14 3.08 5.71 -52.49 -0.30 2.78 16 39 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 41 H 0.08 0.87 7.05 -51.92 -0.37 0.50 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -33.98 338.42 -8.11 -42.09 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.81 Total: -0.70 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.25 Total: -9.73 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.09 Total: -36.10 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.38 Total: -19.03 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.86 Total: 18.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.98 -8.11 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753748041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.879 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds