Wall clock time and date at job start Tue Mar 31 2020 06:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 C 1.50699 * 109.47097 * 120.00108 * 2 1 3 5 5 O 1.20821 * 119.99845 * 232.89341 * 4 2 1 6 6 O 1.34228 * 119.99938 * 52.88923 * 4 2 1 7 7 C 1.45200 * 116.99821 * 185.00602 * 6 4 2 8 8 C 1.53002 * 109.47134 * 184.64380 * 7 6 4 9 9 C 1.50704 * 115.55101 * 295.14788 * 8 7 6 10 10 H 1.07996 * 120.00138 * 92.46712 * 9 8 7 11 11 C 1.37874 * 119.99966 * 272.20002 * 9 8 7 12 12 N 1.31520 * 120.00066 * 355.72228 * 11 9 8 13 13 Si 1.86800 * 120.00257 * 175.72438 * 11 9 8 14 14 H 1.48505 * 109.47045 * 89.99853 * 13 11 9 15 15 H 1.48498 * 109.47333 * 209.99551 * 13 11 9 16 16 H 1.48497 * 109.46770 * 330.00185 * 13 11 9 17 17 C 1.52999 * 117.49889 * 80.81794 * 8 7 6 18 18 C 1.52996 * 117.49996 * 149.47495 * 8 7 6 19 19 C 1.50701 * 109.47114 * 240.00066 * 2 1 3 20 20 C 1.38669 * 120.41991 * 55.60269 * 19 2 1 21 21 C 1.38624 * 118.42217 * 179.78291 * 20 19 2 22 22 C 1.38230 * 119.15905 * 0.51208 * 21 20 19 23 23 N 1.31845 * 120.76458 * 359.72964 * 22 21 20 24 24 C 1.31887 * 121.72681 * 359.97438 * 23 22 21 25 25 H 1.08992 * 109.47131 * 300.00441 * 1 2 3 26 26 H 1.09003 * 109.47074 * 60.00123 * 1 2 3 27 27 H 1.08997 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47550 * 184.85014 * 3 2 1 29 29 H 1.09001 * 109.46908 * 304.85616 * 3 2 1 30 30 H 1.09001 * 109.46820 * 64.85049 * 3 2 1 31 31 H 1.09005 * 109.47523 * 64.64592 * 7 6 4 32 32 H 1.08993 * 109.47294 * 304.64240 * 7 6 4 33 33 H 0.96998 * 120.00087 * 185.00765 * 12 11 9 34 34 H 1.09001 * 117.49615 * 215.00276 * 17 8 7 35 35 H 1.08999 * 117.49855 * 0.02562 * 17 8 7 36 36 H 1.09000 * 117.50033 * 359.97438 * 18 8 7 37 37 H 1.09009 * 117.49699 * 144.97192 * 18 8 7 38 38 H 1.08002 * 120.78934 * 0.02562 * 20 19 2 39 39 H 1.08006 * 120.42062 * 180.21969 * 21 20 19 40 40 H 1.07998 * 119.61616 * 179.74536 * 22 21 20 41 41 H 1.08001 * 119.62085 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.8289 -0.1673 1.9587 6 8 1.5948 -1.9465 1.5173 7 6 2.0337 -2.5259 2.7743 8 6 1.5337 -3.9685 2.8731 9 6 0.0374 -4.1348 2.9399 10 1 -0.5302 -4.2856 2.0336 11 6 -0.6064 -4.0998 4.1586 12 7 0.0923 -4.0058 5.2690 13 14 -2.4709 -4.1858 4.2330 14 1 -2.8975 -5.6051 4.3284 15 1 -2.9537 -3.4427 5.4246 16 1 -3.0437 -3.5783 3.0050 17 6 2.3318 -5.0449 2.1345 18 6 2.3906 -4.9608 3.6617 19 6 2.0324 -0.7104 -1.2305 20 6 1.6295 -0.2995 -2.4921 21 6 2.1206 -0.9796 -3.5957 22 6 2.9811 -2.0441 -3.4027 23 7 3.3389 -2.4104 -2.1877 24 6 2.8961 -1.7829 -1.1155 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1266 1.4438 -0.0869 29 1 1.6075 1.9808 -0.8433 30 1 1.7494 1.9306 0.9303 31 1 1.6303 -1.9441 3.6032 32 1 3.1226 -2.5150 2.8189 33 1 -0.3543 -4.0542 6.1286 34 1 1.7745 -5.8732 1.6970 35 1 3.2132 -4.7253 1.5786 36 1 3.3108 -4.5859 4.1099 37 1 1.8721 -5.7336 4.2293 38 1 0.9523 0.5333 -2.6123 39 1 1.8309 -0.6845 -4.5934 40 1 3.3649 -2.5818 -4.2571 41 1 3.2110 -2.1120 -0.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760217039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:45 Heat of formation + Delta-G solvation = -32.687916 kcal Electronic energy + Delta-G solvation = -23498.450245 eV Core-core repulsion = 20151.188308 eV Total energy + Delta-G solvation = -3347.261936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92632 -39.54696 -37.01347 -35.71939 -35.26289 -32.12930 -31.93827 -30.32876 -27.49670 -26.96747 -25.41659 -24.52355 -23.45162 -22.26624 -21.08402 -19.42244 -19.22249 -17.71455 -16.90014 -16.72478 -16.07297 -15.86885 -15.17848 -14.79799 -14.59343 -14.13084 -13.93534 -13.74150 -13.27683 -13.15526 -12.98192 -12.48829 -12.37967 -12.25127 -12.11055 -11.76442 -11.61451 -11.34145 -11.22168 -10.97074 -10.87841 -10.54455 -10.24285 -9.98944 -9.92816 -9.83651 -9.47794 -9.41191 -9.01538 -8.91793 -8.44377 -8.19316 -6.05361 -4.12804 1.05642 1.22835 2.57504 3.17424 3.27328 3.34478 3.38032 3.76721 4.29345 4.37851 4.59743 4.66941 4.81967 4.88891 4.93478 5.10811 5.11929 5.22544 5.39590 5.48202 5.53918 5.66493 5.73306 5.78647 5.84062 5.95241 6.00553 6.09935 6.15224 6.23355 6.28949 6.31173 6.51120 6.62307 6.67433 6.78408 7.07308 7.15333 7.36387 7.54646 7.86230 7.96972 8.28658 8.40859 8.89260 9.52915 11.02003 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017099 B = 0.005093 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.129882 B = 5496.014846 C = 5790.096033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.010 4.010 3 C -0.128 4.128 4 C 0.460 3.540 5 O -0.515 6.515 6 O -0.330 6.330 7 C 0.114 3.886 8 C 0.032 3.968 9 C -0.486 4.486 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.882 5.882 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.205 4.205 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.064 4.064 21 C -0.175 4.175 22 C 0.094 3.906 23 N -0.478 5.478 24 C 0.117 3.883 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.155 0.845 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 8.765 -14.602 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.012 4.012 3 C -0.185 4.185 4 C 0.303 3.697 5 O -0.404 6.404 6 O -0.245 6.245 7 C 0.040 3.960 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.080 0.920 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.718 3.282 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.243 4.243 18 C -0.174 4.174 19 C -0.121 4.121 20 C -0.090 4.090 21 C -0.194 4.194 22 C -0.063 4.063 23 N -0.185 5.185 24 C -0.040 4.040 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.172 0.828 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.088 8.234 -14.044 16.571 hybrid contribution -1.494 0.621 0.282 1.642 sum 1.595 8.855 -13.763 16.443 Atomic orbital electron populations 1.21914 0.90570 1.04550 1.02728 1.19418 0.98248 0.95233 0.88323 1.21765 1.02044 0.91835 1.02858 1.23244 0.78819 0.81278 0.86379 1.90620 1.32409 1.66800 1.50601 1.86593 1.67738 1.28245 1.41957 1.22972 0.96087 0.95769 0.81126 1.18778 0.93819 0.84501 0.99718 1.20379 0.89161 1.49949 0.92882 0.91969 1.25012 0.98153 0.94546 0.95735 1.69992 1.35401 1.49240 0.97308 0.86609 0.85770 0.78134 0.77678 1.20624 1.21184 1.19697 1.23018 1.02074 1.04126 0.95044 1.22503 0.99592 1.03414 0.91866 1.20475 0.99308 0.97917 0.94432 1.21323 0.97581 0.98839 0.91290 1.22089 0.99761 0.97927 0.99652 1.22818 0.94344 0.94257 0.94927 1.67736 1.23300 1.28609 0.98903 1.22819 0.92569 0.90780 0.97784 0.91293 0.91384 0.90148 0.91610 0.91362 0.91040 0.91096 0.93963 0.92927 0.90146 0.91606 0.91846 0.89008 0.84637 0.84713 0.82807 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.11 37.16 0.30 -1.49 16 2 C -0.01 -0.15 0.81 -156.81 -0.13 -0.27 16 3 C -0.13 -1.50 7.58 37.16 0.28 -1.22 16 4 C 0.46 8.59 5.00 36.01 0.18 8.77 16 5 O -0.51 -10.65 15.66 -18.75 -0.29 -10.94 16 6 O -0.33 -7.02 8.81 -39.25 -0.35 -7.36 16 7 C 0.11 2.65 5.38 37.16 0.20 2.85 16 8 C 0.03 0.80 1.74 -155.66 -0.27 0.53 16 9 C -0.49 -13.15 8.78 -34.44 -0.30 -13.46 16 10 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.07 1.85 5.42 -17.82 -0.10 1.76 16 12 N -0.88 -24.67 12.44 55.43 0.69 -23.98 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.21 -4.57 9.96 -26.70 -0.27 -4.84 16 18 C -0.14 -3.21 9.01 -26.70 -0.24 -3.45 16 19 C -0.12 -1.63 4.75 -104.48 -0.50 -2.13 16 20 C -0.06 -0.68 8.96 -39.28 -0.35 -1.04 16 21 C -0.17 -1.70 10.11 -39.44 -0.40 -2.10 16 22 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 23 N -0.48 -7.33 10.36 -13.25 -0.14 -7.47 16 24 C 0.12 1.88 10.12 -17.55 -0.18 1.70 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.64 7.22 -51.93 -0.38 0.27 16 27 H 0.08 1.18 7.99 -51.93 -0.42 0.77 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.07 0.59 7.92 -51.93 -0.41 0.18 16 30 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 31 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.04 0.94 7.93 -51.93 -0.41 0.53 16 33 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.09 2.30 8.04 -51.92 -0.42 1.88 16 38 H 0.14 1.05 7.33 -52.49 -0.38 0.66 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 2.72 5.95 -52.49 -0.31 2.41 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -30.66 346.60 -7.92 -38.58 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.07 Total: 3.55 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.96 Total: -13.49 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.55 Total: -31.44 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.64 Total: -18.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.66 -7.92 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760217039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.888 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds