Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53003 * 109.47070 * 120.00040 * 2 1 3 5 5 O 1.42897 * 113.28267 * 313.06448 * 4 2 1 6 6 C 1.53505 * 114.20434 * 179.97438 * 4 2 1 7 7 N 1.47068 * 87.98367 * 220.34582 * 6 4 2 8 8 C 1.34778 * 136.05403 * 207.08497 * 7 6 4 9 9 O 1.21543 * 120.00327 * 5.67978 * 8 7 6 10 10 C 1.47886 * 119.99665 * 185.67639 * 8 7 6 11 11 C 1.39925 * 120.02526 * 187.12823 * 10 8 7 12 12 C 1.38323 * 120.35920 * 180.02562 * 11 10 8 13 13 C 1.37757 * 120.41208 * 359.95367 * 12 11 10 14 14 C 1.40741 * 120.03978 * 0.04453 * 13 12 11 15 15 C 1.41438 * 120.17878 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00569 * 151.89966 * 15 14 13 17 17 C 1.39946 * 119.99727 * 331.89521 * 15 14 13 18 18 N 1.30825 * 119.99597 * 165.23650 * 17 15 14 19 19 Si 1.86792 * 119.99839 * 345.24078 * 17 15 14 20 20 H 1.48500 * 109.47516 * 92.70044 * 19 17 15 21 21 H 1.48496 * 109.47042 * 212.69715 * 19 17 15 22 22 H 1.48501 * 109.47528 * 332.69484 * 19 17 15 23 23 C 1.38995 * 120.02554 * 7.14513 * 10 8 7 24 24 C 1.47060 * 87.88473 * 27.34277 * 7 6 4 25 25 H 1.09004 * 109.47108 * 299.99702 * 1 2 3 26 26 H 1.08998 * 109.47451 * 59.99748 * 1 2 3 27 27 H 1.08999 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47197 * 240.00115 * 2 1 3 29 29 H 1.09002 * 109.47300 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47648 * 300.00250 * 3 2 1 31 31 H 1.09005 * 109.47385 * 60.00314 * 3 2 1 32 32 H 0.96699 * 113.99884 * 176.60171 * 5 4 2 33 33 H 1.09001 * 113.46445 * 105.56663 * 6 4 2 34 34 H 1.08997 * 113.51965 * 335.13559 * 6 4 2 35 35 H 1.07999 * 119.81890 * 0.02562 * 11 10 8 36 36 H 1.08000 * 119.79093 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.97606 * 180.02562 * 13 12 11 38 38 H 0.97005 * 119.99575 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.20296 * 359.70765 * 23 10 8 40 40 H 1.09002 * 113.46986 * 87.43743 * 24 7 6 41 41 H 1.09004 * 113.47064 * 217.87365 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 8 1.3832 -0.3064 2.4487 6 6 3.5697 -0.7852 1.3587 7 7 3.4253 -2.1651 1.8462 8 6 4.1350 -2.9941 2.6373 9 8 5.1233 -2.5852 3.2146 10 6 3.7110 -4.4012 2.8028 11 6 4.3551 -5.2214 3.7357 12 6 3.9646 -6.5386 3.8958 13 6 2.9368 -7.0581 3.1398 14 6 2.2771 -6.2483 2.1964 15 6 1.2219 -6.7788 1.4183 16 1 0.4401 -6.1289 1.0537 17 6 1.1908 -8.1459 1.1206 18 7 0.0939 -8.6902 0.6601 19 14 2.7155 -9.1932 1.3807 20 1 2.6745 -9.7992 2.7358 21 1 2.7571 -10.2694 0.3584 22 1 3.9270 -8.3438 1.2548 23 6 2.6727 -4.9100 2.0315 24 6 2.1693 -2.2446 1.0855 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6608 -0.7923 3.2373 33 1 3.9805 -0.1027 2.1027 34 1 4.0779 -0.7155 0.3969 35 1 5.1616 -4.8238 4.3340 36 1 4.4683 -7.1636 4.6183 37 1 2.6373 -8.0874 3.2709 38 1 0.0723 -9.6379 0.4542 39 1 2.1698 -4.2794 1.3133 40 1 2.3073 -2.5598 0.0513 41 1 1.3869 -2.8056 1.5968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765585874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -27.558718 kcal Electronic energy + Delta-G solvation = -23138.735011 eV Core-core repulsion = 19791.695493 eV Total energy + Delta-G solvation = -3347.039518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.94706 -38.58545 -37.20218 -35.12578 -34.42212 -33.70138 -30.81276 -30.50910 -28.27133 -27.56309 -25.82296 -25.20871 -23.65713 -21.96189 -20.73897 -20.01409 -19.28513 -17.59652 -16.92305 -16.22595 -16.07453 -15.72980 -15.31586 -14.76966 -14.51559 -14.16919 -14.12102 -13.68341 -13.34357 -13.19726 -12.86591 -12.77736 -12.51075 -12.42360 -12.13323 -12.10997 -11.68746 -11.60321 -11.21140 -11.16385 -11.00949 -10.93736 -10.73962 -10.58707 -9.97325 -9.88422 -9.65773 -9.48346 -9.12523 -8.61835 -7.95256 -7.81231 -7.06017 -4.63680 1.81556 2.46911 2.98709 3.01274 3.13183 3.20958 3.49717 3.86851 3.95919 4.07945 4.41234 4.53768 4.67875 4.98312 5.06270 5.17842 5.25523 5.34760 5.39071 5.55832 5.58489 5.62541 5.72383 5.79127 5.84485 5.85094 5.96407 6.03669 6.13068 6.17272 6.28073 6.31850 6.50457 6.68141 6.90913 7.14185 7.35770 7.44559 7.49692 7.64348 7.82583 7.91921 8.18249 8.42685 8.56299 8.64575 9.96110 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.004836 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.447049 B = 5788.892323 C = 6928.324290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C -0.147 4.147 4 C 0.107 3.893 5 O -0.528 6.528 6 C 0.074 3.926 7 N -0.647 5.647 8 C 0.594 3.406 9 O -0.549 6.549 10 C -0.103 4.103 11 C -0.183 4.183 12 C -0.086 4.086 13 C -0.219 4.219 14 C 0.082 3.918 15 C -0.444 4.444 16 H 0.092 0.908 17 C 0.083 3.917 18 N -0.806 5.806 19 Si 0.913 3.087 20 H -0.270 1.270 21 H -0.291 1.291 22 H -0.244 1.244 23 C -0.180 4.180 24 C 0.067 3.933 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.383 0.617 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.287 0.713 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 12.391 -2.652 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.204 4.204 4 C 0.064 3.936 5 O -0.334 6.334 6 C -0.050 4.050 7 N -0.383 5.383 8 C 0.388 3.612 9 O -0.427 6.427 10 C -0.106 4.106 11 C -0.203 4.203 12 C -0.104 4.104 13 C -0.238 4.238 14 C 0.079 3.921 15 C -0.473 4.473 16 H 0.110 0.890 17 C -0.136 4.136 18 N -0.430 5.430 19 Si 0.740 3.260 20 H -0.196 1.196 21 H -0.219 1.219 22 H -0.167 1.167 23 C -0.199 4.199 24 C -0.056 4.056 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.232 0.768 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.149 12.670 -2.715 13.008 hybrid contribution 0.911 -1.261 0.406 1.608 sum 2.059 11.409 -2.309 11.821 Atomic orbital electron populations 1.21724 0.93933 1.02411 1.02003 1.20943 0.97241 0.96383 0.94049 1.21823 1.00894 0.95429 1.02239 1.22526 0.90750 0.93114 0.87181 1.86417 1.66315 1.63772 1.16865 1.23756 0.97304 0.83827 1.00086 1.49450 1.25744 1.15049 1.48076 1.18416 0.80986 0.85050 0.76735 1.90691 1.26771 1.77223 1.48042 1.19365 0.99663 0.90945 1.00632 1.20452 1.03316 0.93968 1.02594 1.20577 0.96657 0.94694 0.98495 1.21256 1.01923 0.99940 1.00692 1.17676 0.91609 0.91585 0.91200 1.19470 1.06626 0.93469 1.27698 0.88994 1.26149 0.97296 0.98262 0.91913 1.69656 1.27075 1.14125 1.32173 0.86321 0.83227 0.78896 0.77525 1.19607 1.21890 1.16738 1.21618 0.98823 0.97223 1.02273 1.24100 0.86915 0.96713 0.97905 0.91669 0.92787 0.92311 0.89505 0.92660 0.92446 0.91950 0.76813 0.90139 0.89282 0.87452 0.88004 0.87814 0.90274 0.86636 0.88608 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.94 37.15 0.33 -1.01 16 2 C -0.07 -0.62 2.64 -90.62 -0.24 -0.86 16 3 C -0.15 -1.21 9.00 37.16 0.33 -0.87 16 4 C 0.11 1.20 1.13 -89.97 -0.10 1.10 16 5 O -0.53 -6.34 12.66 -35.23 -0.45 -6.79 16 6 C 0.07 0.92 7.09 -8.51 -0.06 0.85 16 7 N -0.65 -10.31 3.50 -186.16 -0.65 -10.96 16 8 C 0.59 11.97 8.00 -12.31 -0.10 11.88 16 9 O -0.55 -12.40 17.14 5.33 0.09 -12.31 16 10 C -0.10 -2.23 5.87 -105.04 -0.62 -2.84 16 11 C -0.18 -3.98 9.60 -38.92 -0.37 -4.35 16 12 C -0.09 -1.84 10.01 -39.73 -0.40 -2.24 16 13 C -0.22 -5.09 7.05 -38.81 -0.27 -5.36 16 14 C 0.08 1.98 5.18 -106.87 -0.55 1.43 16 15 C -0.44 -11.30 9.60 -37.72 -0.36 -11.66 16 16 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 17 C 0.08 2.08 5.45 -17.34 -0.09 1.98 16 18 N -0.81 -20.56 13.93 55.55 0.77 -19.79 16 19 Si 0.91 20.10 24.38 -169.99 -4.14 15.95 16 20 H -0.27 -5.75 6.61 56.52 0.37 -5.38 16 21 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.24 -5.54 6.72 56.52 0.38 -5.16 16 23 C -0.18 -3.93 8.88 -38.44 -0.34 -4.27 16 24 C 0.07 0.89 5.48 -8.38 -0.05 0.84 16 25 H 0.06 0.67 7.61 -51.93 -0.40 0.28 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.71 7.89 -51.93 -0.41 0.30 16 29 H 0.05 0.43 7.48 -51.93 -0.39 0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.38 4.34 8.84 45.56 0.40 4.74 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.97 8.10 -51.93 -0.42 0.54 16 35 H 0.11 2.25 7.65 -52.49 -0.40 1.84 16 36 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.10 2.39 4.15 -52.49 -0.22 2.17 16 38 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.12 2.27 4.19 -52.49 -0.22 2.05 16 40 H 0.10 1.16 7.92 -51.93 -0.41 0.75 16 41 H 0.10 1.39 6.77 -51.93 -0.35 1.04 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -29.01 331.71 -7.23 -36.24 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -4.96 Total: 8.05 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -2.89 Total: -15.40 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.12 Total: -30.75 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.35 Total: -19.10 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.14 Total: 15.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.01 -7.23 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765585874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.683 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds