Wall clock time and date at job start Tue Mar 31 2020 06:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47078 * 2 1 4 4 C 1.53008 * 109.46705 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46616 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46616 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46705 * 179.97438 * 6 5 4 8 8 S 1.81404 * 109.46858 * 179.97438 * 7 6 5 9 9 O 1.42095 * 110.54189 * 68.37763 * 8 7 6 10 10 O 1.42105 * 110.54289 * 291.62539 * 8 7 6 11 11 N 1.65597 * 104.44929 * 180.02562 * 8 7 6 12 12 C 1.36937 * 120.00401 * 270.00066 * 11 8 7 13 13 H 1.08007 * 119.99754 * 307.66282 * 12 11 8 14 14 C 1.38808 * 120.00456 * 127.65545 * 12 11 8 15 15 N 1.31618 * 120.00116 * 345.43987 * 14 12 11 16 16 Si 1.86799 * 120.00146 * 165.44410 * 14 12 11 17 17 H 1.48507 * 109.47222 * 89.99792 * 16 14 12 18 18 H 1.48495 * 109.47301 * 209.99753 * 16 14 12 19 19 H 1.48500 * 109.47072 * 329.99995 * 16 14 12 20 20 C 1.46504 * 120.00082 * 89.99998 * 11 8 7 21 21 C 1.53002 * 117.50004 * 181.79145 * 20 11 8 22 22 C 1.52999 * 117.49776 * 113.13246 * 20 11 8 23 23 H 1.09007 * 109.46802 * 299.99921 * 1 2 3 24 24 H 1.09003 * 109.47027 * 59.99183 * 1 2 3 25 25 H 1.08995 * 109.47666 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46471 * 240.00487 * 2 1 3 27 27 H 1.08992 * 109.47238 * 120.00312 * 2 1 3 28 28 H 1.08995 * 109.47093 * 60.00710 * 3 2 1 29 29 H 1.08994 * 109.47793 * 299.99987 * 3 2 1 30 30 H 1.08995 * 109.46957 * 60.00391 * 4 3 2 31 31 H 1.08998 * 109.47057 * 299.99654 * 4 3 2 32 32 H 1.08995 * 109.47439 * 60.00317 * 5 4 3 33 33 H 1.09000 * 109.47276 * 299.99166 * 5 4 3 34 34 H 1.08995 * 109.46957 * 60.00022 * 6 5 4 35 35 H 1.08992 * 109.47233 * 299.99711 * 6 5 4 36 36 H 1.09004 * 109.47071 * 60.00619 * 7 6 5 37 37 H 1.08994 * 109.47793 * 299.99752 * 7 6 5 38 38 H 0.96992 * 120.00116 * 178.11209 * 15 14 12 39 39 H 1.09001 * 115.55179 * 327.45738 * 20 11 8 40 40 H 1.09001 * 117.49615 * 359.97438 * 21 20 11 41 41 H 1.08999 * 117.50431 * 145.02006 * 21 20 11 42 42 H 1.09010 * 117.49542 * 214.97918 * 22 20 11 43 43 H 1.08996 * 117.50376 * 359.97293 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8848 0.0000 7 6 6.1201 4.3273 0.0000 8 16 7.9341 4.3272 0.0008 9 8 8.4333 3.8367 -1.2359 10 8 8.4323 3.8370 1.2381 11 7 8.3474 5.9308 0.0014 12 6 8.5188 6.5943 -1.1842 13 1 9.1800 6.1919 -1.9375 14 6 7.8427 7.7838 -1.4180 15 7 6.8338 8.1299 -0.6468 16 14 8.3644 8.8933 -2.8273 17 1 7.6192 8.5171 -4.0555 18 1 8.0669 10.3063 -2.4812 19 1 9.8219 8.7384 -3.0657 20 6 8.5297 6.6398 1.2705 21 6 8.8700 8.1300 1.2046 22 6 9.9415 7.1174 1.6164 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.6768 1.9562 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9329 0.9287 -0.8909 31 1 3.9337 0.9285 0.8891 32 1 3.7172 3.3982 0.8904 33 1 3.7165 3.3992 -0.8896 34 1 5.9734 2.3714 -0.8902 35 1 5.9734 2.3706 0.8897 36 1 5.7568 4.8411 0.8901 37 1 5.7569 4.8412 -0.8899 38 1 6.3789 8.9740 -0.7930 39 1 7.8966 6.3040 2.0918 40 1 8.9586 8.5828 0.2171 41 1 8.4611 8.7746 1.9827 42 1 10.2370 7.0961 2.6654 43 1 10.7347 6.9038 0.9001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799643608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:55 Heat of formation + Delta-G solvation = -76.225933 kcal Electronic energy + Delta-G solvation = -21621.007883 eV Core-core repulsion = 18407.301948 eV Total energy + Delta-G solvation = -3213.705935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -37.21760 -36.73319 -35.69399 -34.54654 -34.18033 -32.95945 -31.00960 -30.52151 -26.36375 -24.95046 -22.67055 -21.31242 -21.02419 -20.87540 -20.62031 -18.31096 -16.85563 -16.51749 -16.06044 -15.39609 -15.08385 -14.84633 -14.37612 -14.12948 -13.84190 -13.57975 -13.29759 -13.13323 -12.54307 -12.27300 -12.03929 -11.94341 -11.79911 -11.42904 -11.25860 -11.17316 -11.04133 -10.91115 -10.80311 -10.74005 -10.68587 -10.61149 -10.59830 -10.44219 -10.37294 -10.31768 -9.76528 -9.44579 -9.12124 -8.72826 -7.51134 -6.55047 -4.29866 1.66099 3.08108 3.15547 3.21076 3.92505 4.25392 4.63236 4.69421 4.80794 4.96139 4.96762 5.10844 5.15703 5.29942 5.33095 5.38623 5.54085 5.59019 5.64567 5.75778 5.77097 5.88054 5.94059 5.99442 6.01620 6.02875 6.09287 6.15433 6.17042 6.21848 6.28512 6.43387 6.45127 6.53852 6.59203 6.72400 6.96604 7.24771 7.33253 7.60215 8.33841 8.72554 9.25568 10.42886 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003897 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.150101 B = 7183.698285 C = 7797.390401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.111 4.111 6 C -0.107 4.107 7 C -0.641 4.641 8 S 2.513 3.487 9 O -0.979 6.979 10 O -1.003 7.003 11 N -0.791 5.791 12 C -0.269 4.269 13 H 0.097 0.903 14 C 0.050 3.950 15 N -0.822 5.822 16 Si 0.910 3.090 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.263 1.263 20 C 0.122 3.878 21 C -0.149 4.149 22 C -0.211 4.211 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.273 0.727 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 -5.327 1.967 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.162 4.162 5 C -0.150 4.150 6 C -0.146 4.146 7 C -0.764 4.764 8 S 2.616 3.384 9 O -0.969 6.969 10 O -0.993 6.993 11 N -0.614 5.614 12 C -0.414 4.414 13 H 0.114 0.886 14 C -0.164 4.164 15 N -0.458 5.458 16 Si 0.735 3.265 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.187 1.187 20 C 0.014 3.986 21 C -0.188 4.188 22 C -0.251 4.251 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.531 -6.168 2.080 9.954 hybrid contribution -0.743 1.026 -0.619 1.410 sum -8.274 -5.142 1.461 9.851 Atomic orbital electron populations 1.21784 0.96130 1.01339 1.01763 1.21551 0.95624 0.97250 1.01938 1.21634 0.95716 0.96424 1.02049 1.21675 0.95064 0.97354 1.02077 1.21569 0.94965 0.96130 1.02292 1.21258 0.96797 0.94506 1.02054 1.30853 1.33713 1.01957 1.09880 1.10998 0.77789 0.76506 0.73146 1.93383 1.77954 1.80231 1.45380 1.93370 1.78673 1.81299 1.45976 1.52526 1.73626 1.27331 1.07907 1.19423 1.22770 1.04780 0.94400 0.88564 1.25868 0.93606 0.99665 0.97246 1.70083 1.16395 1.22223 1.37049 0.86198 0.80085 0.78993 0.81218 1.19726 1.20401 1.18730 1.20820 0.95713 0.95182 0.86907 1.23089 1.00962 0.92223 1.02554 1.23373 0.94407 1.07134 1.00218 0.92833 0.92808 0.92988 0.92105 0.92128 0.92082 0.92047 0.91968 0.92027 0.91964 0.91830 0.91510 0.91670 0.87110 0.86154 0.91670 0.88101 0.87339 0.90762 0.90229 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.26 5.21 -26.73 -0.14 -1.40 16 4 C -0.12 -1.49 5.21 -26.73 -0.14 -1.63 16 5 C -0.11 -1.60 5.21 -26.73 -0.14 -1.74 16 6 C -0.11 -1.84 5.22 -26.73 -0.14 -1.98 16 7 C -0.64 -12.70 6.18 37.16 0.23 -12.47 16 8 S 2.51 58.86 5.39 -107.50 -0.58 58.28 16 9 O -0.98 -25.57 17.11 -57.54 -0.98 -26.55 16 10 O -1.00 -24.99 17.25 -57.54 -0.99 -25.98 16 11 N -0.79 -19.06 2.94 -53.42 -0.16 -19.22 16 12 C -0.27 -6.70 8.21 -15.06 -0.12 -6.83 16 13 H 0.10 2.47 7.69 -52.48 -0.40 2.06 16 14 C 0.05 1.17 3.14 -17.43 -0.05 1.11 16 15 N -0.82 -19.46 11.64 55.49 0.65 -18.81 16 16 Si 0.91 18.44 29.44 -169.99 -5.00 13.44 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C 0.12 2.72 5.40 -67.93 -0.37 2.35 16 21 C -0.15 -3.08 8.37 -26.69 -0.22 -3.31 16 22 C -0.21 -4.23 10.38 -26.69 -0.28 -4.50 16 23 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.11 2.11 8.14 -51.92 -0.42 1.69 16 37 H 0.12 2.46 8.14 -51.93 -0.42 2.04 16 38 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 39 H 0.10 2.12 8.13 -51.93 -0.42 1.70 16 40 H 0.11 2.41 5.12 -51.93 -0.27 2.14 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 43 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -28.29 359.28 -10.66 -38.95 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.84 Total: 7.06 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: -1.16 Total: -32.58 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.49 Total: -38.03 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -1.98 Total: -52.53 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.00 Total: 13.44 kcal Atomic # 16 Polarization: 58.86 SS G_CDS: -0.58 Total: 58.28 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.29 -10.66 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799643608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.276 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds