Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.53005 * 109.46893 * 240.00248 * 2 1 3 5 5 C 1.50699 * 109.46913 * 60.00107 * 4 2 1 6 6 H 1.07993 * 120.00408 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99553 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00389 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99821 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47207 * 90.00219 * 9 7 5 11 11 H 1.48501 * 109.47218 * 209.99776 * 9 7 5 12 12 H 1.48495 * 109.47413 * 330.00022 * 9 7 5 13 13 C 1.52992 * 109.47195 * 120.00153 * 2 1 3 14 14 N 1.46499 * 109.47267 * 300.00079 * 13 2 1 15 15 C 1.39715 * 119.99845 * 180.02562 * 14 13 2 16 16 C 1.39035 * 119.92468 * 359.72161 * 15 14 13 17 17 C 1.38346 * 120.14431 * 179.79641 * 16 15 14 18 18 C 1.37616 * 120.05252 * 0.45050 * 17 16 15 19 19 C 1.39776 * 120.42815 * 359.80409 * 18 17 16 20 20 C 1.38646 * 119.92074 * 180.02562 * 15 14 13 21 21 C 1.47452 * 108.04089 * 180.02562 * 19 18 17 22 22 O 1.21473 * 124.89735 * 180.02562 * 21 19 18 23 23 O 1.34338 * 110.20681 * 359.97438 * 21 19 18 24 24 C 1.45378 * 109.02271 * 0.02562 * 23 21 19 25 25 H 1.08996 * 109.47248 * 299.99428 * 1 2 3 26 26 H 1.08996 * 109.47200 * 60.00228 * 1 2 3 27 27 H 1.09005 * 109.46932 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47244 * 300.00375 * 3 2 1 30 30 H 1.09005 * 109.47269 * 60.00262 * 3 2 1 31 31 H 1.08997 * 109.46785 * 179.97438 * 4 2 1 32 32 H 1.08992 * 109.47085 * 299.99703 * 4 2 1 33 33 H 0.97005 * 120.00528 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.47330 * 179.97438 * 13 2 1 35 35 H 1.09005 * 109.47124 * 60.00187 * 13 2 1 36 36 H 0.96999 * 119.99984 * 359.97438 * 14 13 2 37 37 H 1.07998 * 119.92544 * 0.02562 * 16 15 14 38 38 H 1.07996 * 119.96820 * 180.27674 * 17 16 15 39 39 H 1.07999 * 120.13211 * 359.97438 * 20 15 14 40 40 H 1.09004 * 110.06866 * 119.23517 * 24 23 21 41 41 H 1.08998 * 110.06911 * 240.70591 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6272 -1.5507 -3.8527 9 14 1.2479 0.3988 -5.2571 10 1 2.2253 1.4413 -5.6612 11 1 1.0837 -0.5804 -6.3615 12 1 -0.0607 1.0353 -4.9613 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8897 -0.5078 3.7143 16 6 2.6848 -1.6414 3.8399 17 6 3.0258 -2.1154 5.0941 18 6 2.5707 -1.4707 6.2216 19 6 1.7663 -0.3331 6.1105 20 6 1.4263 0.1466 4.8453 21 6 1.4402 0.1303 7.4718 22 8 0.7549 1.0993 7.7305 23 8 2.0095 -0.6742 8.3847 24 6 2.7489 -1.7209 7.6983 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6767 -1.7488 -1.2493 33 1 2.8621 -1.8817 -4.7338 34 1 3.1301 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9943 0.7582 2.3564 37 1 3.0401 -2.1510 2.9564 38 1 3.6472 -2.9936 5.1884 39 1 0.8049 1.0246 4.7473 40 1 3.8052 -1.6672 7.9621 41 1 2.3468 -2.6986 7.9638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809787634.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = -60.710311 kcal Electronic energy + Delta-G solvation = -22233.645341 eV Core-core repulsion = 18885.168262 eV Total energy + Delta-G solvation = -3348.477079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63018 -39.16586 -37.69954 -37.23686 -34.46532 -32.42233 -31.33368 -30.35131 -27.50951 -26.98293 -26.59338 -25.56204 -24.32790 -22.95793 -21.52788 -20.83725 -18.43173 -17.80597 -17.23665 -16.93446 -16.55888 -16.24090 -15.33501 -14.95110 -14.56685 -14.52415 -14.39389 -13.85725 -13.82248 -13.53088 -13.24514 -13.13507 -12.90583 -12.37048 -12.14623 -11.99939 -11.67698 -11.42685 -11.11871 -11.07320 -10.91714 -10.72484 -10.49365 -10.39512 -10.32111 -10.13891 -9.82232 -9.30858 -9.27288 -9.02842 -8.43946 -7.46698 -6.08458 -4.09686 0.48735 1.24209 2.39494 2.86664 3.25724 3.32476 3.33385 3.36174 3.59881 3.78953 4.02302 4.38794 4.59444 4.89917 4.90016 5.01500 5.24309 5.27423 5.28478 5.36457 5.46094 5.61442 5.67649 5.87988 5.96686 6.05873 6.05980 6.07460 6.16281 6.26976 6.36849 6.52928 6.54845 6.57474 6.93804 6.97988 7.00528 7.28065 7.28955 7.52093 7.64282 7.71889 7.89823 8.31902 8.94839 9.54156 11.02988 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040375 B = 0.002828 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.335191 B = 9898.390797 C =10390.025097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.731 5.731 15 C 0.224 3.776 16 C -0.163 4.163 17 C -0.045 4.045 18 C -0.179 4.179 19 C -0.147 4.147 20 C -0.119 4.119 21 C 0.523 3.477 22 O -0.457 6.457 23 O -0.324 6.324 24 C 0.102 3.898 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.402 0.598 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -1.926 18.141 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.184 4.184 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.358 5.358 15 C 0.117 3.883 16 C -0.186 4.186 17 C -0.064 4.064 18 C -0.182 4.182 19 C -0.150 4.150 20 C -0.142 4.142 21 C 0.365 3.635 22 O -0.343 6.343 23 O -0.239 6.239 24 C 0.028 3.972 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.239 0.761 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.127 0.873 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.170 -1.675 18.164 18.279 hybrid contribution -0.416 0.613 -1.184 1.397 sum 0.754 -1.063 16.980 17.030 Atomic orbital electron populations 1.21756 0.95171 1.01157 1.00361 1.20877 0.95569 0.95915 0.94794 1.21755 1.00471 0.95861 1.00358 1.19088 0.96251 0.95163 0.89542 1.21174 1.31259 1.12136 0.90508 0.92259 1.25000 0.95261 0.95037 0.99116 1.69950 1.36971 1.23002 1.23533 0.86647 0.79248 0.79440 0.82986 1.20726 1.21280 1.19916 1.21705 0.98331 0.95914 0.83537 1.45156 1.55964 1.32603 1.02075 1.17789 0.92539 0.92329 0.85683 1.20950 1.02120 0.97479 0.98063 1.19951 0.97961 0.98703 0.89757 1.20415 1.03657 0.98930 0.95215 1.20376 1.02283 0.98507 0.93809 1.20180 1.03416 1.01659 0.88991 1.20588 0.77035 0.81155 0.84713 1.90875 1.34554 1.23867 1.85027 1.87196 1.62251 1.39748 1.34751 1.22242 0.97423 0.90035 0.87494 0.95160 0.91426 0.93386 0.93383 0.91434 0.95158 0.96402 0.96391 0.92990 0.92218 0.92219 0.76133 0.84475 0.85026 0.85102 0.87285 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.07 -1.24 0.54 -154.51 -0.08 -1.33 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.12 7.65 -34.44 -0.26 -13.38 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.13 1.88 3.80 -4.05 -0.02 1.87 16 14 N -0.73 -9.30 5.13 -58.66 -0.30 -9.60 16 15 C 0.22 2.72 6.65 -83.82 -0.56 2.16 16 16 C -0.16 -1.78 9.31 -39.25 -0.37 -2.14 16 17 C -0.04 -0.41 10.02 -39.77 -0.40 -0.80 16 18 C -0.18 -1.74 6.38 -104.21 -0.67 -2.40 16 19 C -0.15 -1.79 6.27 -105.09 -0.66 -2.45 16 20 C -0.12 -1.46 9.95 -38.95 -0.39 -1.85 16 21 C 0.52 7.07 8.58 34.48 0.30 7.37 16 22 O -0.46 -7.57 18.04 -18.92 -0.34 -7.92 16 23 O -0.32 -3.69 11.13 -39.17 -0.44 -4.13 16 24 C 0.10 0.75 7.93 36.07 0.29 1.04 16 25 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 30 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 0.88 7.95 -51.93 -0.41 0.47 16 35 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 36 H 0.40 4.90 6.17 -40.82 -0.25 4.64 16 37 H 0.14 1.43 6.71 -52.49 -0.35 1.08 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -29.95 335.78 -8.37 -38.32 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.64 Total: 0.77 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.42 Total: -13.41 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.44 Total: -34.38 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.78 Total: -12.04 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.95 -8.37 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809787634.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.395 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds