Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42905 * 109.47256 * 2 1 4 4 C 1.50702 * 109.46872 * 119.99952 * 2 1 3 5 5 O 1.21277 * 120.00501 * 22.89337 * 4 2 1 6 6 N 1.34775 * 119.99908 * 202.89831 * 4 2 1 7 7 C 1.46508 * 120.00277 * 184.77573 * 6 4 2 8 8 C 1.53000 * 109.47122 * 176.21114 * 7 6 4 9 9 C 1.50705 * 115.55143 * 299.10026 * 8 7 6 10 10 H 1.07994 * 119.99581 * 95.17706 * 9 8 7 11 11 C 1.37870 * 119.99715 * 275.18332 * 9 8 7 12 12 N 1.31511 * 120.00599 * 5.78564 * 11 9 8 13 13 Si 1.86803 * 119.99849 * 185.79072 * 11 9 8 14 14 H 1.48501 * 109.47082 * 89.99392 * 13 11 9 15 15 H 1.48500 * 109.47313 * 209.99866 * 13 11 9 16 16 H 1.48498 * 109.46947 * 329.99827 * 13 11 9 17 17 C 1.53001 * 117.49416 * 153.43165 * 8 7 6 18 18 C 1.52999 * 117.50051 * 84.77262 * 8 7 6 19 19 C 1.50698 * 109.47231 * 239.99732 * 2 1 3 20 20 C 1.38236 * 119.99976 * 297.33525 * 19 2 1 21 21 C 1.38231 * 119.99851 * 179.78647 * 20 19 2 22 22 C 1.38232 * 120.00207 * 0.44480 * 21 20 19 23 23 C 1.38236 * 119.99914 * 359.80944 * 22 21 20 24 24 C 1.38233 * 119.99944 * 117.60949 * 19 2 1 25 25 H 1.08995 * 109.46888 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47082 * 300.00219 * 1 2 3 27 27 H 1.09000 * 109.46671 * 60.00547 * 1 2 3 28 28 H 0.96696 * 113.99483 * 179.97438 * 3 2 1 29 29 H 0.97004 * 120.00264 * 4.76712 * 6 4 2 30 30 H 1.08999 * 109.46589 * 296.20832 * 7 6 4 31 31 H 1.08998 * 109.46781 * 56.20724 * 7 6 4 32 32 H 0.96999 * 120.00676 * 185.02394 * 12 11 9 33 33 H 1.08994 * 117.50271 * 0.02562 * 17 8 7 34 34 H 1.08999 * 117.49604 * 145.01992 * 17 8 7 35 35 H 1.08991 * 117.50189 * 214.98154 * 18 8 7 36 36 H 1.09005 * 117.49562 * 359.97273 * 18 8 7 37 37 H 1.08003 * 120.00032 * 359.97438 * 20 19 2 38 38 H 1.08001 * 120.00239 * 180.27561 * 21 20 19 39 39 H 1.08004 * 120.00444 * 179.83788 * 22 21 20 40 40 H 1.08007 * 120.00237 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.00307 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3223 -1.5114 1.8007 6 7 3.2707 -0.4556 1.6974 7 6 3.7984 -1.2207 2.8299 8 6 5.2459 -0.8032 3.0972 9 6 6.2101 -1.0379 1.9630 10 1 6.4343 -0.2397 1.2711 11 6 6.8059 -2.2717 1.8089 12 7 6.4486 -3.2754 2.5799 13 14 8.1207 -2.5176 0.5049 14 1 9.4551 -2.2222 1.0857 15 1 8.0884 -3.9236 0.0284 16 1 7.8637 -1.6022 -0.6358 17 6 5.7774 -0.9697 4.5223 18 6 5.4752 0.4280 3.9761 19 6 2.0324 -0.7104 -1.2304 20 6 1.7445 -2.0489 -1.4216 21 6 2.2016 -2.6994 -2.5524 22 6 2.9543 -2.0140 -3.4875 23 6 3.2466 -0.6768 -3.2937 24 6 2.7859 -0.0251 -2.1650 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 2.9704 1.4235 0.0004 29 1 3.8126 0.2344 1.2836 30 1 3.1939 -1.0231 3.7151 31 1 3.7643 -2.2849 2.5967 32 1 6.9174 -4.1226 2.5216 33 1 5.0960 -1.3770 5.2692 34 1 6.8245 -1.2486 4.6394 35 1 6.3236 1.0681 3.7342 36 1 4.5948 0.9409 4.3634 37 1 1.1599 -2.5856 -0.6890 38 1 1.9729 -3.7440 -2.7041 39 1 3.3136 -2.5229 -4.3697 40 1 3.8351 -0.1413 -4.0240 41 1 3.0142 1.0196 -2.0136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817599413.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -40.616704 kcal Electronic energy + Delta-G solvation = -23582.981299 eV Core-core repulsion = 20235.375545 eV Total energy + Delta-G solvation = -3347.605755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40650 -38.52474 -36.90574 -36.44694 -33.39107 -32.18321 -32.01641 -30.74392 -29.24412 -26.76392 -25.42049 -23.81745 -22.47625 -21.66703 -21.16858 -19.64774 -19.37116 -18.17014 -17.39752 -16.19531 -15.72688 -15.40398 -14.85705 -14.73876 -14.40721 -14.21296 -14.06120 -13.52298 -13.36661 -13.15303 -12.79610 -12.62111 -12.41035 -12.08927 -11.88621 -11.73128 -11.58604 -11.45883 -11.11111 -10.97550 -10.91143 -10.66209 -10.58121 -10.30799 -9.69536 -9.30681 -9.01114 -8.82652 -8.62228 -8.52373 -8.35986 -8.11862 -6.13062 -4.21837 1.36064 1.49513 2.98912 3.22616 3.30906 3.31526 3.63561 3.89539 4.17956 4.32227 4.63760 4.95020 5.02193 5.06645 5.16093 5.18406 5.24030 5.37418 5.55111 5.64590 5.81420 5.87512 5.98054 6.01804 6.11201 6.19711 6.27957 6.42061 6.48760 6.51953 6.58898 6.59322 6.65432 6.81260 7.04217 7.05211 7.17404 7.36206 7.38693 7.44109 7.76295 8.17374 8.27797 8.71210 8.79516 9.46100 10.95377 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.006753 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.990118 B = 4145.528632 C = 5399.545014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.162 3.838 3 O -0.545 6.545 4 C 0.491 3.509 5 O -0.546 6.546 6 N -0.693 5.693 7 C 0.163 3.837 8 C 0.026 3.974 9 C -0.499 4.499 10 H 0.059 0.941 11 C 0.076 3.924 12 N -0.872 5.872 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.148 4.148 18 C -0.210 4.210 19 C -0.111 4.111 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.105 4.105 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.379 0.621 29 H 0.396 0.604 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.253 5.460 -8.998 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.118 3.882 3 O -0.352 6.352 4 C 0.275 3.725 5 O -0.425 6.425 6 N -0.342 5.342 7 C 0.040 3.960 8 C 0.025 3.975 9 C -0.536 4.536 10 H 0.078 0.922 11 C -0.129 4.129 12 N -0.508 5.508 13 Si 0.714 3.286 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.186 4.186 18 C -0.248 4.248 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.136 4.136 23 C -0.138 4.138 24 C -0.123 4.123 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.230 0.770 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.380 4.772 -8.578 12.907 hybrid contribution 1.877 -0.175 -0.786 2.043 sum -6.503 4.597 -9.364 12.293 Atomic orbital electron populations 1.21582 0.89561 1.03585 1.02914 1.20296 0.96557 0.81396 0.89978 1.86594 1.27193 1.24634 1.96741 1.20924 0.82506 0.83429 0.85670 1.90656 1.56402 1.36295 1.59151 1.45887 1.14762 1.38809 1.34706 1.21028 0.93379 0.96023 0.85540 1.19043 0.91576 0.95440 0.91415 1.20317 1.25351 0.96667 1.11298 0.92247 1.24948 0.96451 0.95585 0.95896 1.69998 1.38990 1.02516 1.39291 0.86680 0.82245 0.77515 0.82154 1.20617 1.21250 1.19774 1.22482 1.00977 0.97267 0.97855 1.23045 1.01442 0.91716 1.08568 1.20149 0.99857 0.94871 0.96279 1.21054 0.99362 0.93716 0.97494 1.21117 0.98307 0.99855 0.94310 1.21176 0.98378 0.94740 0.99295 1.21087 1.00029 0.94898 0.97754 1.20932 0.97198 1.00184 0.93964 0.89954 0.91246 0.91354 0.77185 0.77002 0.94513 0.90736 0.92870 0.91662 0.89798 0.90277 0.91576 0.85500 0.85958 0.86186 0.85981 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 8.19 37.16 0.30 -1.34 16 2 C 0.16 2.46 1.17 -92.92 -0.11 2.36 16 3 O -0.55 -7.44 11.84 -35.23 -0.42 -7.86 16 4 C 0.49 9.28 6.25 -10.99 -0.07 9.21 16 5 O -0.55 -11.92 16.06 5.56 0.09 -11.83 16 6 N -0.69 -13.41 5.35 -60.29 -0.32 -13.73 16 7 C 0.16 3.67 5.52 -4.04 -0.02 3.65 16 8 C 0.03 0.60 1.41 -155.66 -0.22 0.38 16 9 C -0.50 -12.56 8.50 -34.44 -0.29 -12.85 16 10 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 11 C 0.08 1.98 5.39 -17.82 -0.10 1.88 16 12 N -0.87 -23.96 12.92 55.43 0.72 -23.24 16 13 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 C -0.15 -3.32 9.45 -26.69 -0.25 -3.57 16 18 C -0.21 -4.29 9.95 -26.69 -0.27 -4.55 16 19 C -0.11 -1.65 4.77 -104.63 -0.50 -2.15 16 20 C -0.10 -1.50 8.80 -39.58 -0.35 -1.85 16 21 C -0.12 -1.61 10.05 -39.59 -0.40 -2.00 16 22 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 23 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 24 C -0.10 -1.40 9.21 -39.58 -0.36 -1.76 16 25 H 0.08 1.13 7.29 -51.93 -0.38 0.76 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.38 4.30 6.73 45.56 0.31 4.61 16 29 H 0.40 6.92 6.81 -40.82 -0.28 6.64 16 30 H 0.04 0.82 8.11 -51.93 -0.42 0.39 16 31 H 0.07 1.94 8.14 -51.93 -0.42 1.52 16 32 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.13 1.99 7.66 -52.48 -0.40 1.59 16 38 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 41 H 0.13 1.45 6.66 -52.49 -0.35 1.10 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -29.77 346.36 -8.46 -38.23 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.30 Total: 14.21 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -3.43 Total: -16.39 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.39 Total: -36.97 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.33 Total: -19.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.77 -8.46 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817599413.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.390 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds