Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47295 * 2 1 4 4 O 1.42905 * 113.28195 * 313.06487 * 3 2 1 5 5 C 1.53492 * 114.20692 * 180.02562 * 3 2 1 6 6 N 1.47066 * 87.98786 * 220.34491 * 5 3 2 7 7 C 1.34769 * 136.06212 * 207.08613 * 6 5 3 8 8 O 1.21280 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.00347 * 179.97438 * 7 6 5 10 10 C 1.50693 * 109.47118 * 180.02562 * 9 7 6 11 11 C 1.37634 * 120.12981 * 264.99625 * 10 9 7 12 12 C 1.38610 * 120.25326 * 180.02562 * 11 10 9 13 13 C 1.38655 * 120.50139 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.24879 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.12829 * 85.25404 * 10 9 7 16 16 C 1.41391 * 120.24763 * 0.02562 * 15 10 9 17 17 H 1.08002 * 119.99657 * 334.26850 * 16 15 10 18 18 C 1.39944 * 120.00260 * 154.27292 * 16 15 10 19 19 N 1.30818 * 119.99816 * 343.66632 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 163.67180 * 18 16 15 21 21 H 1.48500 * 109.47114 * 89.99804 * 20 18 16 22 22 H 1.48501 * 109.46960 * 209.99569 * 20 18 16 23 23 H 1.48498 * 109.47256 * 329.99404 * 20 18 16 24 24 C 1.47067 * 87.88179 * 27.34199 * 6 5 3 25 25 H 1.08999 * 109.47714 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47559 * 300.00158 * 1 2 3 27 27 H 1.09005 * 109.47089 * 60.00276 * 1 2 3 28 28 H 1.09001 * 109.47121 * 239.99852 * 2 1 3 29 29 H 1.08999 * 109.46863 * 120.00105 * 2 1 3 30 30 H 0.96698 * 113.99373 * 46.93073 * 4 3 2 31 31 H 1.08997 * 113.46999 * 105.56586 * 5 3 2 32 32 H 1.09000 * 113.52359 * 335.13068 * 5 3 2 33 33 H 1.08997 * 109.47190 * 59.99486 * 9 7 6 34 34 H 1.09004 * 109.46614 * 299.99765 * 9 7 6 35 35 H 1.08006 * 119.87682 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.75517 * 180.02562 * 12 11 10 37 37 H 1.08003 * 119.87889 * 180.02562 * 13 12 11 38 38 H 1.07995 * 120.12844 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99886 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.47120 * 87.44151 * 24 6 5 41 41 H 1.09004 * 113.47108 * 217.88099 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.3832 2.2738 -0.9590 5 6 3.5697 1.5692 -0.0006 6 7 3.4262 2.6811 0.9511 7 6 4.1360 3.7805 1.2732 8 8 5.1774 4.0196 0.6995 9 6 3.6357 4.7129 2.3464 10 6 4.6050 5.8548 2.5117 11 6 5.5827 5.7967 3.4787 12 6 6.4753 6.8458 3.6332 13 6 6.3945 7.9644 2.8180 14 6 5.4252 8.0442 1.8446 15 6 4.5108 6.9869 1.6815 16 6 3.5069 7.0604 0.6886 17 1 3.0912 6.1544 0.2729 18 6 3.0520 8.3071 0.2443 19 7 3.3027 9.3826 0.9456 20 14 2.0868 8.4353 -1.3498 21 1 0.6372 8.2859 -1.0642 22 1 2.3345 9.7601 -1.9732 23 1 2.5214 7.3618 -2.2794 24 6 2.1704 2.0620 1.4012 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 0.4197 2.1916 -0.9564 31 1 3.9797 1.8725 -0.9639 32 1 4.0782 0.7013 0.4193 33 1 3.5490 4.1702 3.2877 34 1 2.6590 5.1041 2.0614 35 1 5.6541 4.9307 4.1202 36 1 7.2396 6.7915 4.3944 37 1 7.0955 8.7759 2.9469 38 1 5.3638 8.9166 1.2110 39 1 2.9871 10.2467 0.6379 40 1 2.3091 1.3236 2.1910 41 1 1.3882 2.7851 1.6321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839760123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = -31.127309 kcal Electronic energy + Delta-G solvation = -23098.531380 eV Core-core repulsion = 19751.337117 eV Total energy + Delta-G solvation = -3347.194263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54787 -38.33907 -37.01376 -35.28920 -33.55546 -32.84202 -31.65530 -29.41706 -28.83464 -26.51031 -25.97944 -24.91813 -23.58066 -20.86806 -20.58873 -19.82311 -18.59507 -17.11014 -17.00313 -16.50199 -15.58975 -15.48913 -15.15207 -14.84364 -14.38101 -14.14949 -13.96306 -13.50111 -13.31566 -12.69613 -12.68498 -12.58969 -12.49051 -12.12601 -11.78271 -11.66726 -11.49053 -11.39413 -11.09167 -10.96618 -10.91036 -10.68115 -10.63076 -10.32835 -10.00587 -9.42200 -9.31172 -9.09886 -9.05238 -8.35354 -7.25276 -7.22522 -6.67323 -4.27006 2.82500 2.97261 3.11889 3.19773 3.30747 3.33563 3.38089 3.79672 4.01225 4.14283 4.50194 4.66327 4.72939 4.93805 5.11614 5.27902 5.32417 5.41482 5.47620 5.58492 5.68305 5.70232 5.79487 5.84962 5.92548 5.96682 6.11860 6.32818 6.41028 6.49500 6.57190 6.86758 7.16016 7.36057 7.48633 7.50889 7.71276 7.98119 8.10936 8.19135 8.19391 8.38450 8.71879 8.89095 8.98989 9.08258 10.26862 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.005471 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.110409 B = 5116.881468 C = 6585.648073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C 0.091 3.909 4 O -0.527 6.527 5 C 0.112 3.888 6 N -0.649 5.649 7 C 0.548 3.452 8 O -0.518 6.518 9 C -0.061 4.061 10 C -0.183 4.183 11 C -0.081 4.081 12 C -0.241 4.241 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.454 4.454 17 H 0.074 0.926 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.902 3.098 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.260 1.260 24 C 0.076 3.924 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.377 0.623 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.087 0.913 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 -15.799 -0.274 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.175 4.175 3 C 0.049 3.951 4 O -0.333 6.333 5 C -0.012 4.012 6 N -0.388 5.388 7 C 0.339 3.661 8 O -0.391 6.391 9 C -0.100 4.100 10 C -0.185 4.185 11 C -0.099 4.099 12 C -0.260 4.260 13 C -0.125 4.125 14 C -0.179 4.179 15 C 0.127 3.873 16 C -0.484 4.484 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.726 3.274 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.049 4.049 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.900 -14.976 -0.656 16.502 hybrid contribution -1.021 -0.045 -0.505 1.140 sum -7.921 -15.021 -1.160 17.021 Atomic orbital electron populations 1.21792 0.95238 1.02544 1.02170 1.21949 0.96754 0.95305 1.03528 1.22522 0.94047 0.89416 0.89140 1.86631 1.23831 1.65319 1.57502 1.22925 0.93142 0.89852 0.95245 1.49596 1.25445 1.22936 1.40799 1.20903 0.82805 0.78776 0.83624 1.90689 1.23127 1.72312 1.53006 1.20179 1.00776 0.93883 0.95199 1.19062 1.00972 0.97288 1.01203 1.20287 0.95417 0.96627 0.97568 1.20288 1.03617 0.97051 1.05038 1.20672 0.98274 0.96522 0.97052 1.21293 0.95587 1.00778 1.00207 1.17342 0.90567 0.89900 0.89499 1.19496 1.18058 0.92667 1.18196 0.90741 1.25873 0.95419 0.95373 0.97312 1.69823 1.37131 0.99852 1.35348 0.86411 0.79876 0.78634 0.82458 1.19548 1.20113 1.18416 1.23708 0.87605 0.96651 0.96889 0.91956 0.92107 0.92280 0.90618 0.90253 0.77409 0.89999 0.89128 0.90857 0.88692 0.89832 0.89670 0.89574 0.86511 0.91022 0.89474 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.36 37.15 0.35 -0.53 16 2 C -0.14 -0.94 5.72 -26.73 -0.15 -1.09 16 3 C 0.09 0.97 1.67 -89.97 -0.15 0.82 16 4 O -0.53 -6.65 13.52 -35.23 -0.48 -7.12 16 5 C 0.11 1.52 8.03 -8.52 -0.07 1.45 16 6 N -0.65 -10.96 3.69 -185.06 -0.68 -11.64 16 7 C 0.55 11.95 7.73 -10.99 -0.08 11.87 16 8 O -0.52 -13.70 16.81 5.56 0.09 -13.60 16 9 C -0.06 -1.30 5.01 -29.03 -0.15 -1.44 16 10 C -0.18 -4.66 4.43 -103.92 -0.46 -5.12 16 11 C -0.08 -1.95 9.66 -39.66 -0.38 -2.33 16 12 C -0.24 -5.82 10.05 -39.29 -0.39 -6.21 16 13 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 14 C -0.16 -4.42 8.68 -38.87 -0.34 -4.76 16 15 C 0.13 3.62 5.56 -106.82 -0.59 3.03 16 16 C -0.45 -12.59 8.15 -37.74 -0.31 -12.90 16 17 H 0.07 2.06 6.68 -52.49 -0.35 1.71 16 18 C 0.08 2.03 5.16 -17.34 -0.09 1.94 16 19 N -0.80 -21.18 10.96 55.55 0.61 -20.57 16 20 Si 0.90 19.76 29.59 -169.99 -5.03 14.73 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.08 0.88 7.86 -8.38 -0.07 0.81 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.31 6.71 -51.93 -0.35 -0.04 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 30 H 0.38 3.14 6.93 45.56 0.32 3.45 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.07 1.32 8.05 -51.93 -0.42 0.90 16 34 H 0.09 2.02 7.04 -51.93 -0.37 1.66 16 35 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 36 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 38 H 0.12 3.31 6.21 -52.49 -0.33 2.99 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -34.48 341.71 -8.87 -43.35 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.25 Total: 7.28 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.28 Total: -17.58 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: -0.07 Total: -32.21 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.38 Total: -20.73 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.48 -8.87 -43.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839760123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.227 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds