Wall clock time and date at job start Tue Mar 31 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35786 * 119.99774 * 2 1 4 4 C 1.41513 * 119.99838 * 173.75005 * 3 2 1 5 5 C 1.38038 * 126.10967 * 175.51753 * 4 3 2 6 6 C 1.40293 * 106.52788 * 179.97438 * 5 4 3 7 7 C 1.35184 * 107.20705 * 359.97438 * 6 5 4 8 8 O 1.34032 * 109.04659 * 359.75450 * 7 6 5 9 9 C 1.41328 * 119.99925 * 179.97438 * 2 1 3 10 10 O 1.21844 * 119.99963 * 290.16281 * 9 2 1 11 11 N 1.34780 * 120.00183 * 109.88125 * 9 2 1 12 12 C 1.36747 * 119.99857 * 356.17038 * 11 9 2 13 13 H 1.07998 * 120.00406 * 127.68519 * 12 11 9 14 14 C 1.39079 * 119.99618 * 307.68578 * 12 11 9 15 15 N 1.31353 * 120.00060 * 335.53117 * 14 12 11 16 16 Si 1.86803 * 119.99769 * 155.53179 * 14 12 11 17 17 H 1.48501 * 109.47193 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47108 * 119.99750 * 16 14 12 19 19 H 1.48503 * 109.47030 * 239.99790 * 16 14 12 20 20 C 1.46497 * 120.00527 * 176.16476 * 11 9 2 21 21 C 1.54262 * 110.03327 * 235.54967 * 20 11 9 22 22 C 1.54966 * 104.16208 * 217.13149 * 21 20 11 23 23 C 1.54897 * 102.77193 * 37.88674 * 22 21 20 24 24 C 1.53867 * 110.03242 * 118.32881 * 20 11 9 25 25 H 1.08996 * 109.47014 * 275.40808 * 1 2 3 26 26 H 1.08999 * 109.47076 * 35.41188 * 1 2 3 27 27 H 1.08993 * 109.47099 * 155.40752 * 1 2 3 28 28 H 1.07997 * 120.00224 * 353.74134 * 3 2 1 29 29 H 1.08005 * 126.73640 * 359.95414 * 5 4 3 30 30 H 1.07998 * 126.39755 * 180.02562 * 6 5 4 31 31 H 1.08003 * 125.47235 * 180.02562 * 7 6 5 32 32 H 0.97002 * 119.99799 * 185.21011 * 15 14 12 33 33 H 1.09000 * 110.01315 * 356.93974 * 20 11 9 34 34 H 1.08993 * 110.48847 * 335.78502 * 21 20 11 35 35 H 1.09002 * 110.48908 * 98.42499 * 21 20 11 36 36 H 1.09002 * 110.72325 * 279.57958 * 22 21 20 37 37 H 1.09000 * 110.92511 * 156.29081 * 22 21 20 38 38 H 1.08994 * 110.48291 * 203.40454 * 23 22 21 39 39 H 1.09006 * 110.59330 * 80.82019 * 23 22 21 40 40 H 1.09006 * 110.03288 * 238.56954 * 24 20 11 41 41 H 1.08995 * 110.03644 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1860 1.1760 0.0000 4 6 3.5948 1.1796 0.1334 5 6 4.4157 2.2871 0.0630 6 6 5.7269 1.8246 0.2502 7 6 5.6576 0.4857 0.4241 8 8 4.3751 0.1020 0.3591 9 6 2.2137 -1.2239 0.0005 10 8 2.2033 -1.9329 0.9914 11 7 2.8944 -1.6096 -1.0969 12 6 2.8377 -0.8560 -2.2366 13 1 3.7497 -0.5406 -2.7214 14 6 1.6054 -0.4958 -2.7713 15 7 0.5413 -1.2227 -2.5171 16 14 1.4636 1.0219 -3.8511 17 1 2.7969 1.6624 -3.9824 18 1 0.9682 0.6289 -5.1948 19 1 0.5127 1.9813 -3.2341 20 6 3.6952 -2.8360 -1.0689 21 6 5.1517 -2.5254 -1.4711 22 6 5.5873 -3.7595 -2.3011 23 6 4.3053 -4.1056 -3.0986 24 6 3.1572 -3.8405 -2.1029 25 1 -0.3633 0.0969 1.0231 26 1 -0.3633 0.8375 -0.5955 27 1 -0.3633 -0.9344 -0.4276 28 1 1.6508 2.1085 -0.1020 29 1 4.1089 3.3091 -0.1039 30 1 6.6240 2.4259 0.2554 31 1 6.5000 -0.1688 0.5929 32 1 -0.3019 -1.0161 -2.9498 33 1 3.6689 -3.2761 -0.0721 34 1 5.1951 -1.6221 -2.0794 35 1 5.7780 -2.4203 -0.5852 36 1 5.8696 -4.5843 -1.6468 37 1 6.4051 -3.5060 -2.9756 38 1 4.3147 -5.1530 -3.4000 39 1 4.2103 -3.4593 -3.9712 40 1 2.8706 -4.7685 -1.6079 41 1 2.3006 -3.4154 -2.6258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846885743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:39 Heat of formation + Delta-G solvation = 0.680669 kcal Electronic energy + Delta-G solvation = -25106.341032 eV Core-core repulsion = 21760.526066 eV Total energy + Delta-G solvation = -3345.814966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.74642 -39.13880 -36.88313 -34.34207 -33.50096 -32.26113 -31.45552 -29.54017 -27.89668 -27.16450 -25.56048 -24.77270 -22.56919 -20.92813 -20.23556 -20.08049 -19.15929 -18.52171 -17.09482 -15.72991 -15.60000 -15.30840 -15.06638 -14.54722 -14.40060 -13.95099 -13.93320 -12.93715 -12.69399 -12.51779 -12.44814 -12.36574 -12.20382 -11.87087 -11.67151 -11.43441 -11.18915 -11.05100 -10.84330 -10.66243 -10.59277 -10.44216 -10.36679 -10.28275 -9.84329 -9.58111 -9.50075 -9.13838 -8.83547 -8.40498 -7.25205 -6.89446 -6.40230 -4.08529 1.64967 2.94123 3.08986 3.21225 3.27489 3.63963 3.74876 4.06456 4.23514 4.87667 4.99877 5.39301 5.42137 5.46029 5.55592 5.60187 5.63913 5.97156 6.17671 6.22503 6.24846 6.26326 6.30148 6.33783 6.38268 6.38783 6.46606 6.50062 6.56660 6.60885 6.76062 6.80052 6.86544 7.01189 7.06591 7.10983 7.26427 7.38227 7.40035 7.52191 7.90943 8.05240 8.69054 8.97012 9.60160 10.05933 10.64073 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.010454 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.785040 B = 2677.804530 C = 3506.072538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.034 4.034 3 C -0.126 4.126 4 C 0.071 3.929 5 C -0.231 4.231 6 C -0.215 4.215 7 C -0.055 4.055 8 O -0.139 6.139 9 C 0.541 3.459 10 O -0.610 6.610 11 N -0.420 5.420 12 C -0.335 4.335 13 H 0.078 0.922 14 C 0.065 3.935 15 N -0.849 5.849 16 Si 0.891 3.109 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.276 1.276 20 C 0.136 3.864 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.126 4.126 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.188 0.812 32 H 0.270 0.730 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 2.692 0.367 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.036 4.036 3 C -0.145 4.145 4 C 0.020 3.980 5 C -0.250 4.250 6 C -0.234 4.234 7 C -0.124 4.124 8 O -0.033 6.033 9 C 0.332 3.668 10 O -0.497 6.497 11 N -0.137 5.137 12 C -0.464 4.464 13 H 0.096 0.904 14 C -0.144 4.144 15 N -0.483 5.483 16 Si 0.717 3.283 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.201 1.201 20 C 0.032 3.968 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.164 4.164 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.205 0.795 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.069 2.033 0.865 5.530 hybrid contribution -0.039 1.035 -0.971 1.420 sum 5.030 3.068 -0.106 5.893 Atomic orbital electron populations 1.20748 0.90633 1.04363 1.00303 1.20948 0.96844 0.93951 0.91901 1.19871 0.88208 0.97845 1.08571 1.19799 0.91784 0.84148 1.02292 1.21900 0.92607 0.98701 1.11759 1.21458 0.97937 0.94836 1.09201 1.23881 0.85126 0.95696 1.07719 1.84295 1.16457 1.34673 1.67828 1.16829 0.81015 0.86024 0.82909 1.90686 1.67511 1.56587 1.34935 1.43190 1.41968 1.19191 1.09378 1.18914 0.92488 1.29778 1.05185 0.90402 1.25428 0.95856 0.97118 0.95955 1.69924 1.01580 1.35702 1.41143 0.86409 0.79097 0.83100 0.79647 1.18912 1.20901 1.20112 1.21526 0.89962 0.86969 0.98341 1.22604 0.96171 0.98395 0.98877 1.22449 0.97293 0.97933 0.98314 1.22251 0.94992 0.99481 0.98587 1.22399 0.99428 0.97695 0.96906 0.92194 0.92350 0.89024 0.84569 0.84264 0.84483 0.79486 0.92014 0.90695 0.90487 0.93138 0.92472 0.92581 0.93208 0.91764 0.93645 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 8.94 36.01 0.32 -1.81 16 2 C -0.03 -0.77 3.27 -104.32 -0.34 -1.11 16 3 C -0.13 -2.62 9.02 -39.21 -0.35 -2.97 16 4 C 0.07 1.48 6.06 -38.41 -0.23 1.24 16 5 C -0.23 -4.16 10.90 -38.88 -0.42 -4.59 16 6 C -0.22 -3.55 10.87 -39.90 -0.43 -3.98 16 7 C -0.05 -0.96 12.06 29.65 0.36 -0.60 16 8 O -0.14 -2.98 7.61 4.63 0.04 -2.95 16 9 C 0.54 13.85 4.06 -15.08 -0.06 13.78 16 10 O -0.61 -17.28 16.45 5.06 0.08 -17.20 16 11 N -0.42 -10.13 1.49 -109.85 -0.16 -10.29 16 12 C -0.34 -8.12 6.17 -15.05 -0.09 -8.22 16 13 H 0.08 1.95 6.67 -52.49 -0.35 1.60 16 14 C 0.06 1.55 3.69 -17.44 -0.06 1.49 16 15 N -0.85 -20.94 10.56 55.50 0.59 -20.35 16 16 Si 0.89 19.12 29.62 -169.99 -5.04 14.09 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.14 3.01 3.28 -66.82 -0.22 2.79 16 21 C -0.12 -2.30 6.41 -25.03 -0.16 -2.46 16 22 C -0.12 -1.95 6.91 -24.69 -0.17 -2.12 16 23 C -0.12 -1.99 6.83 -25.07 -0.17 -2.17 16 24 C -0.13 -2.61 6.29 -25.62 -0.16 -2.77 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.10 8.11 -51.93 -0.42 0.67 16 27 H 0.09 2.08 6.66 -51.93 -0.35 1.74 16 28 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 29 H 0.14 2.17 8.06 -52.48 -0.42 1.74 16 30 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.19 2.60 8.06 -52.48 -0.42 2.17 16 32 H 0.27 6.33 8.32 -40.82 -0.34 5.99 16 33 H 0.07 1.79 6.96 -51.93 -0.36 1.43 16 34 H 0.08 1.56 6.24 -51.93 -0.32 1.24 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 2.22 7.43 -51.93 -0.39 1.84 16 LS Contribution 331.42 15.07 4.99 4.99 Total: -1.00 -28.67 331.42 -7.68 -36.35 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.97 Total: 8.85 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.21 Total: -13.49 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.42 Total: -30.65 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.12 Total: -20.14 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.04 Total: 14.09 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.67 -7.68 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846885743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.029 kcal (2) G-P(sol) polarization free energy of solvation -28.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds