Wall clock time and date at job start Tue Mar 31 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35786 * 119.99774 * 2 1 4 4 C 1.41513 * 119.99838 * 173.75005 * 3 2 1 5 5 C 1.38038 * 126.10967 * 175.51753 * 4 3 2 6 6 C 1.40293 * 106.52788 * 179.97438 * 5 4 3 7 7 C 1.35184 * 107.20705 * 359.97438 * 6 5 4 8 8 O 1.34032 * 109.04659 * 359.75450 * 7 6 5 9 9 C 1.41328 * 119.99925 * 179.97438 * 2 1 3 10 10 O 1.21844 * 119.99963 * 290.16281 * 9 2 1 11 11 N 1.34780 * 120.00183 * 109.88125 * 9 2 1 12 12 C 1.36747 * 119.99857 * 356.17038 * 11 9 2 13 13 H 1.07998 * 120.00406 * 127.68519 * 12 11 9 14 14 C 1.39079 * 119.99618 * 307.68578 * 12 11 9 15 15 N 1.31353 * 120.00060 * 335.53117 * 14 12 11 16 16 Si 1.86803 * 119.99769 * 155.53179 * 14 12 11 17 17 H 1.48501 * 109.47193 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47108 * 119.99750 * 16 14 12 19 19 H 1.48503 * 109.47030 * 239.99790 * 16 14 12 20 20 C 1.46497 * 120.00527 * 176.16476 * 11 9 2 21 21 C 1.54262 * 110.03327 * 235.54967 * 20 11 9 22 22 C 1.54966 * 104.16208 * 217.13149 * 21 20 11 23 23 C 1.54897 * 102.77193 * 37.88674 * 22 21 20 24 24 C 1.53867 * 110.03242 * 118.32881 * 20 11 9 25 25 H 1.08996 * 109.47014 * 275.40808 * 1 2 3 26 26 H 1.08999 * 109.47076 * 35.41188 * 1 2 3 27 27 H 1.08993 * 109.47099 * 155.40752 * 1 2 3 28 28 H 1.07997 * 120.00224 * 353.74134 * 3 2 1 29 29 H 1.08005 * 126.73640 * 359.95414 * 5 4 3 30 30 H 1.07998 * 126.39755 * 180.02562 * 6 5 4 31 31 H 1.08003 * 125.47235 * 180.02562 * 7 6 5 32 32 H 0.97002 * 119.99799 * 185.21011 * 15 14 12 33 33 H 1.09000 * 110.01315 * 356.93974 * 20 11 9 34 34 H 1.08993 * 110.48847 * 335.78502 * 21 20 11 35 35 H 1.09002 * 110.48908 * 98.42499 * 21 20 11 36 36 H 1.09002 * 110.72325 * 279.57958 * 22 21 20 37 37 H 1.09000 * 110.92511 * 156.29081 * 22 21 20 38 38 H 1.08994 * 110.48291 * 203.40454 * 23 22 21 39 39 H 1.09006 * 110.59330 * 80.82019 * 23 22 21 40 40 H 1.09006 * 110.03288 * 238.56954 * 24 20 11 41 41 H 1.08995 * 110.03644 * 0.02562 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1860 1.1760 0.0000 4 6 3.5948 1.1796 0.1334 5 6 4.4157 2.2871 0.0630 6 6 5.7269 1.8246 0.2502 7 6 5.6576 0.4857 0.4241 8 8 4.3751 0.1020 0.3591 9 6 2.2137 -1.2239 0.0005 10 8 2.2033 -1.9329 0.9914 11 7 2.8944 -1.6096 -1.0969 12 6 2.8377 -0.8560 -2.2366 13 1 3.7497 -0.5406 -2.7214 14 6 1.6054 -0.4958 -2.7713 15 7 0.5413 -1.2227 -2.5171 16 14 1.4636 1.0219 -3.8511 17 1 2.7969 1.6624 -3.9824 18 1 0.9682 0.6289 -5.1948 19 1 0.5127 1.9813 -3.2341 20 6 3.6952 -2.8360 -1.0689 21 6 5.1517 -2.5254 -1.4711 22 6 5.5873 -3.7595 -2.3011 23 6 4.3053 -4.1056 -3.0986 24 6 3.1572 -3.8405 -2.1029 25 1 -0.3633 0.0969 1.0231 26 1 -0.3633 0.8375 -0.5955 27 1 -0.3633 -0.9344 -0.4276 28 1 1.6508 2.1085 -0.1020 29 1 4.1089 3.3091 -0.1039 30 1 6.6240 2.4259 0.2554 31 1 6.5000 -0.1688 0.5929 32 1 -0.3019 -1.0161 -2.9498 33 1 3.6689 -3.2761 -0.0721 34 1 5.1951 -1.6221 -2.0794 35 1 5.7780 -2.4203 -0.5852 36 1 5.8696 -4.5843 -1.6468 37 1 6.4051 -3.5060 -2.9756 38 1 4.3147 -5.1530 -3.4000 39 1 4.2103 -3.4593 -3.9712 40 1 2.8706 -4.7685 -1.6079 41 1 2.3006 -3.4154 -2.6258 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846885743.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:38 Heat of formation + Delta-G solvation = -13.487209 kcal Electronic energy + Delta-G solvation = -25106.955397 eV Core-core repulsion = 21760.526066 eV Total energy + Delta-G solvation = -3346.429331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19672 -40.92266 -38.51866 -36.18776 -35.14715 -33.68515 -33.28613 -31.04572 -29.44782 -28.79125 -27.06886 -26.63355 -24.22502 -22.34802 -21.74882 -21.56098 -20.90294 -20.16424 -18.65710 -17.46669 -17.36101 -16.92064 -16.60645 -16.21828 -15.96163 -15.66696 -15.53964 -14.54541 -14.28873 -14.10758 -14.05109 -13.91359 -13.57649 -13.49228 -13.18856 -13.11619 -12.95811 -12.72272 -12.48142 -12.33909 -12.25891 -12.05757 -11.83724 -11.81518 -11.31494 -11.30585 -11.03035 -10.71771 -10.51953 -10.28408 -9.12614 -8.40441 -8.23891 -5.97522 0.09582 1.38137 1.47473 1.55733 1.58297 2.04194 2.23887 2.39697 2.53293 3.06872 3.25646 3.88889 3.94397 4.03385 4.16757 4.24397 4.27283 4.43920 4.62486 4.64324 4.69489 4.77370 4.80501 4.82365 4.84085 4.91895 4.94593 5.09239 5.12411 5.18167 5.21408 5.24636 5.34377 5.46747 5.54170 5.58564 5.62004 5.64703 5.69689 5.92673 6.20345 6.48752 6.80076 7.11317 7.72367 8.20713 8.81277 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011928 B = 0.010454 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.785040 B = 2677.804530 C = 3506.072538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.085 4.085 3 C -0.103 4.103 4 C 0.017 3.983 5 C -0.211 4.211 6 C -0.213 4.213 7 C -0.060 4.060 8 O -0.171 6.171 9 C 0.533 3.467 10 O -0.658 6.658 11 N -0.416 5.416 12 C -0.339 4.339 13 H 0.069 0.931 14 C 0.041 3.959 15 N -0.870 5.870 16 Si 0.940 3.060 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.124 3.876 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.107 4.107 24 C -0.123 4.123 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.217 0.783 32 H 0.272 0.728 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 4.325 -0.635 8.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.121 4.121 4 C -0.033 4.033 5 C -0.230 4.230 6 C -0.232 4.232 7 C -0.129 4.129 8 O -0.066 6.066 9 C 0.325 3.675 10 O -0.549 6.549 11 N -0.131 5.131 12 C -0.466 4.466 13 H 0.086 0.914 14 C -0.166 4.166 15 N -0.504 5.504 16 Si 0.764 3.236 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.189 1.189 20 C 0.020 3.980 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.162 4.162 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.192 0.808 31 H 0.233 0.767 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.121 3.671 -0.164 8.014 hybrid contribution -0.538 0.558 -0.627 0.997 sum 6.584 4.229 -0.791 7.865 Atomic orbital electron populations 1.20608 0.89670 1.03311 1.01157 1.20921 0.97634 0.93636 0.96559 1.20287 0.88784 0.98106 1.04972 1.20116 0.92233 0.85086 1.05888 1.22379 0.92856 0.99150 1.08619 1.21898 0.98656 0.94608 1.08000 1.24689 0.84661 0.97156 1.06372 1.84279 1.18006 1.35844 1.68461 1.17279 0.81138 0.86666 0.82410 1.90618 1.69415 1.58398 1.36487 1.43259 1.41436 1.19338 1.09093 1.18810 0.92319 1.30451 1.05064 0.91358 1.25912 0.95297 0.98557 0.96788 1.70005 1.01968 1.36706 1.41754 0.85684 0.78996 0.80643 0.78233 1.19034 1.21039 1.18948 1.21730 0.92144 0.86859 0.97296 1.22484 0.93909 0.99184 0.99404 1.22428 0.97170 0.96898 0.98258 1.22195 0.93983 1.00981 0.97315 1.22314 0.99573 0.97067 0.97199 0.90902 0.90784 0.91974 0.81715 0.81579 0.80836 0.76689 0.91825 0.93508 0.92008 0.92284 0.90683 0.89933 0.90550 0.92544 0.93508 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.80 8.94 71.24 0.64 -3.17 16 2 C -0.08 -3.98 3.27 -19.67 -0.06 -4.05 16 3 C -0.10 -4.21 9.02 22.51 0.20 -4.01 16 4 C 0.02 0.69 6.06 23.03 0.14 0.83 16 5 C -0.21 -6.99 10.90 22.72 0.25 -6.74 16 6 C -0.21 -6.29 10.87 22.07 0.24 -6.05 16 7 C -0.06 -1.99 12.06 67.12 0.81 -1.18 16 8 O -0.17 -7.32 7.61 -6.34 -0.05 -7.36 16 9 C 0.53 28.43 4.06 85.00 0.35 28.77 16 10 O -0.66 -39.52 16.45 -4.81 -0.08 -39.60 16 11 N -0.42 -20.74 1.49 -619.61 -0.92 -21.67 16 12 C -0.34 -16.65 6.17 84.13 0.52 -16.13 16 13 H 0.07 3.46 6.67 -2.91 -0.02 3.44 16 14 C 0.04 1.99 3.69 84.97 0.31 2.31 16 15 N -0.87 -43.95 10.56 21.69 0.23 -43.73 16 16 Si 0.94 38.55 29.62 68.60 2.03 40.58 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 20 C 0.12 5.64 3.28 45.71 0.15 5.79 16 21 C -0.11 -4.13 6.41 31.69 0.20 -3.92 16 22 C -0.11 -3.24 6.91 31.92 0.22 -3.02 16 23 C -0.11 -3.55 6.83 31.67 0.22 -3.34 16 24 C -0.12 -5.23 6.29 31.32 0.20 -5.03 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.07 2.76 8.11 -2.39 -0.02 2.74 16 27 H 0.06 2.94 6.66 -2.39 -0.02 2.93 16 28 H 0.17 5.51 8.06 -2.91 -0.02 5.49 16 29 H 0.17 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.22 5.46 8.06 -2.91 -0.02 5.43 16 32 H 0.27 13.00 8.32 -92.71 -0.77 12.23 16 33 H 0.05 2.36 6.96 -2.39 -0.02 2.34 16 34 H 0.06 2.48 6.24 -2.39 -0.01 2.46 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.06 2.79 7.43 -2.39 -0.02 2.78 16 Total: -1.00 -65.37 331.42 6.61 -58.76 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 1.02 Total: 31.95 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.38 Total: -18.94 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.69 Total: -65.39 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.13 Total: -46.96 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -65.37 6.61 -58.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846885743.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.277 kcal (2) G-P(sol) polarization free energy of solvation -65.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds