Wall clock time and date at job start Tue Mar 31 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35623 * 120.00292 * 2 1 4 4 C 1.41602 * 120.00124 * 177.21912 * 3 2 1 5 5 C 1.37950 * 126.10200 * 185.69004 * 4 3 2 6 6 C 1.40313 * 106.52763 * 179.97438 * 5 4 3 7 7 C 1.35158 * 107.20815 * 0.02562 * 6 5 4 8 8 O 1.34020 * 109.02709 * 359.75020 * 7 6 5 9 9 C 1.41549 * 119.99455 * 180.02562 * 2 1 3 10 10 O 1.21781 * 120.00142 * 84.96924 * 9 2 1 11 11 N 1.34781 * 119.99879 * 264.96231 * 9 2 1 12 12 C 1.46499 * 119.99998 * 355.23392 * 11 9 2 13 13 C 1.50701 * 109.46972 * 89.99496 * 12 11 9 14 14 H 1.07995 * 120.00519 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99742 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99948 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99970 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47149 * 60.00592 * 17 15 13 19 19 H 1.48498 * 109.47166 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47228 * 300.00734 * 17 15 13 21 21 C 1.46497 * 120.00038 * 174.95495 * 11 9 2 22 22 C 1.53001 * 109.47004 * 95.12550 * 21 11 9 23 23 C 1.52997 * 117.49954 * 243.47147 * 22 21 11 24 24 C 1.52995 * 117.49795 * 174.84755 * 22 21 11 25 25 H 1.09008 * 109.46734 * 275.07958 * 1 2 3 26 26 H 1.09001 * 109.47167 * 35.07498 * 1 2 3 27 27 H 1.08994 * 109.47321 * 155.08160 * 1 2 3 28 28 H 1.08002 * 119.99609 * 357.21433 * 3 2 1 29 29 H 1.07998 * 126.73971 * 359.96721 * 5 4 3 30 30 H 1.08008 * 126.39888 * 180.02562 * 6 5 4 31 31 H 1.08001 * 125.48660 * 180.02562 * 7 6 5 32 32 H 1.08995 * 109.47278 * 209.99933 * 12 11 9 33 33 H 1.09001 * 109.46829 * 329.99655 * 12 11 9 34 34 H 0.97001 * 119.99514 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.47391 * 215.12883 * 21 11 9 36 36 H 1.09002 * 109.47193 * 335.13109 * 21 11 9 37 37 H 1.08997 * 115.55014 * 29.17703 * 22 21 11 38 38 H 1.09004 * 117.50090 * 359.97438 * 23 22 21 39 39 H 1.09000 * 117.50391 * 145.02262 * 23 22 21 40 40 H 1.09002 * 117.50041 * 214.98178 * 24 22 21 41 41 H 1.09007 * 117.50232 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.1745 0.0000 4 6 3.6000 1.1752 0.0595 5 6 4.4081 2.2870 0.1771 6 6 5.7306 1.8188 0.1981 7 6 5.6798 0.4722 0.0943 8 8 4.3982 0.0881 0.0164 9 6 2.2147 -1.2259 -0.0005 10 8 2.4390 -1.7991 -1.0514 11 7 2.6404 -1.7588 1.1620 12 6 2.4633 -1.0202 2.4146 13 6 1.1344 -1.3809 3.0270 14 1 0.4866 -2.0897 2.5327 15 6 0.7459 -0.8066 4.2188 16 7 1.5350 0.0562 4.8209 17 14 -0.9010 -1.2542 4.9782 18 1 -0.9389 -2.7129 5.2537 19 1 -1.0805 -0.5054 6.2479 20 1 -1.9930 -0.8999 4.0363 21 6 3.2745 -3.0794 1.1737 22 6 4.7947 -2.9156 1.1172 23 6 5.5202 -3.4732 -0.1090 24 6 5.6466 -4.1803 1.2419 25 1 -0.3633 0.0910 1.0237 26 1 -0.3633 0.8410 -0.5905 27 1 -0.3634 -0.9319 -0.4330 28 1 1.6462 2.1093 -0.0455 29 1 4.0860 3.3159 0.2405 30 1 6.6228 2.4219 0.2815 31 1 6.5342 -0.1883 0.0813 32 1 3.2646 -1.2803 3.1062 33 1 2.4915 0.0505 2.2122 34 1 1.2614 0.4605 5.6592 35 1 2.9996 -3.6064 2.0872 36 1 2.9384 -3.6515 0.3089 37 1 5.1856 -1.9997 1.5603 38 1 4.9146 -3.9572 -0.8753 39 1 6.3887 -2.9242 -0.4729 40 1 6.5982 -4.0964 1.7669 41 1 5.1241 -5.1292 1.3638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847440708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:28 Heat of formation + Delta-G solvation = 22.086986 kcal Electronic energy + Delta-G solvation = -24251.980165 eV Core-core repulsion = 20907.093447 eV Total energy + Delta-G solvation = -3344.886719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.09195 -39.40665 -37.01431 -34.73121 -34.29027 -32.59340 -32.43428 -29.99926 -27.80904 -26.59677 -25.82612 -23.25761 -22.35780 -21.96353 -21.20843 -20.53754 -19.85018 -17.94828 -17.00082 -16.47435 -15.99610 -15.58205 -15.39480 -14.78773 -14.49190 -14.44203 -13.85960 -13.62064 -12.84501 -12.72465 -12.62525 -12.50050 -12.34060 -12.11741 -11.96291 -11.74182 -11.43938 -11.32212 -11.21393 -11.09500 -10.90352 -10.75428 -10.26181 -10.07322 -9.86304 -9.69694 -9.53769 -9.37712 -9.05685 -8.52285 -7.64422 -7.29322 -6.14631 -4.21960 1.26321 2.66578 3.19975 3.23445 3.29275 3.31609 3.34678 3.59877 4.02429 4.27122 4.36797 5.08559 5.13801 5.17692 5.25215 5.30101 5.31151 5.37641 5.48701 5.76741 5.85195 5.87898 5.89668 6.02002 6.12572 6.14238 6.17571 6.20919 6.29550 6.39180 6.40251 6.50559 6.64588 6.72007 6.74742 6.87606 6.96872 7.28186 7.55612 7.61055 7.78956 8.10661 8.39097 8.81659 9.04131 9.44798 10.91835 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.007195 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.491070 B = 3890.413301 C = 4637.620179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.091 4.091 3 C -0.090 4.090 4 C 0.029 3.971 5 C -0.201 4.201 6 C -0.216 4.216 7 C -0.041 4.041 8 O -0.144 6.144 9 C 0.561 3.439 10 O -0.567 6.567 11 N -0.578 5.578 12 C 0.239 3.761 13 C -0.535 4.535 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.150 3.850 22 C -0.151 4.151 23 C -0.173 4.173 24 C -0.184 4.184 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.192 0.808 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 0.897 -6.979 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.109 4.109 4 C -0.021 4.021 5 C -0.220 4.220 6 C -0.235 4.235 7 C -0.110 4.110 8 O -0.038 6.038 9 C 0.350 3.650 10 O -0.449 6.449 11 N -0.307 5.307 12 C 0.119 3.881 13 C -0.574 4.574 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.026 3.974 22 C -0.170 4.170 23 C -0.210 4.210 24 C -0.222 4.222 25 H 0.114 0.886 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.209 0.791 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.534 0.414 -7.334 9.197 hybrid contribution -0.601 0.118 0.849 1.046 sum 4.933 0.532 -6.486 8.166 Atomic orbital electron populations 1.20738 0.89257 1.02271 1.03897 1.21030 0.97735 0.93583 0.97046 1.20048 0.87999 0.98102 1.04777 1.19924 0.91679 0.84508 1.06028 1.22030 0.92469 0.98771 1.08752 1.21575 0.98043 0.94680 1.09199 1.23980 0.84887 0.95778 1.06355 1.84261 1.16210 1.34047 1.69303 1.16874 0.78727 0.85389 0.84034 1.90758 1.59478 1.63272 1.31384 1.48133 1.55944 1.18065 1.08548 1.19403 0.96922 0.92330 0.79399 1.21444 1.03187 1.26105 1.06621 0.92222 1.24919 0.97262 0.94837 0.96670 1.69929 1.36697 1.28444 1.17651 0.86638 0.84019 0.78670 0.78615 1.20203 1.21203 1.20066 1.20831 0.88905 0.85482 1.02137 1.22716 0.94983 0.97390 1.01891 1.22904 1.02604 1.04029 0.91429 1.22921 1.01550 0.96799 1.00899 0.88591 0.91487 0.91778 0.83267 0.83565 0.83884 0.79103 0.95001 0.94102 0.92566 0.90311 0.90879 0.87938 0.88910 0.89775 0.89297 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 10.01 36.01 0.36 -1.42 16 2 C -0.09 -1.80 4.19 -104.29 -0.44 -2.23 16 3 C -0.09 -1.63 8.75 -39.23 -0.34 -1.97 16 4 C 0.03 0.54 6.11 -38.40 -0.23 0.30 16 5 C -0.20 -3.24 10.90 -38.91 -0.42 -3.66 16 6 C -0.22 -3.19 10.87 -39.90 -0.43 -3.63 16 7 C -0.04 -0.64 12.06 29.64 0.36 -0.28 16 8 O -0.14 -2.75 7.86 4.04 0.03 -2.72 16 9 C 0.56 12.24 4.26 -15.00 -0.06 12.18 16 10 O -0.57 -13.45 16.64 4.45 0.07 -13.38 16 11 N -0.58 -12.50 1.98 -178.50 -0.35 -12.86 16 12 C 0.24 5.78 4.94 -5.19 -0.03 5.76 16 13 C -0.53 -13.74 9.37 -34.44 -0.32 -14.06 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 C 0.15 2.90 5.71 -4.04 -0.02 2.87 16 22 C -0.15 -2.53 6.01 -90.62 -0.54 -3.08 16 23 C -0.17 -2.55 10.18 -26.73 -0.27 -2.82 16 24 C -0.18 -2.52 10.25 -26.73 -0.27 -2.80 16 25 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 26 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 27 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 28 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.19 2.33 8.06 -52.49 -0.42 1.91 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.04 1.05 5.72 -51.93 -0.30 0.75 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 36 H 0.07 1.42 7.08 -51.93 -0.37 1.05 16 37 H 0.10 1.85 8.11 -51.93 -0.42 1.43 16 38 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 1.18 8.14 -51.92 -0.42 0.75 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -30.30 351.93 -8.12 -38.42 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.11 Total: 6.92 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.78 Total: -13.21 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.38 Total: -36.59 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.11 Total: -16.10 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.30 -8.12 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847440708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.508 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds