Wall clock time and date at job start Tue Mar 31 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35623 * 120.00292 * 2 1 4 4 C 1.41602 * 120.00124 * 177.21912 * 3 2 1 5 5 C 1.37950 * 126.10200 * 185.69004 * 4 3 2 6 6 C 1.40313 * 106.52763 * 179.97438 * 5 4 3 7 7 C 1.35158 * 107.20815 * 0.02562 * 6 5 4 8 8 O 1.34020 * 109.02709 * 359.75020 * 7 6 5 9 9 C 1.41549 * 119.99455 * 180.02562 * 2 1 3 10 10 O 1.21781 * 120.00142 * 84.96924 * 9 2 1 11 11 N 1.34781 * 119.99879 * 264.96231 * 9 2 1 12 12 C 1.46499 * 119.99998 * 355.23392 * 11 9 2 13 13 C 1.50701 * 109.46972 * 89.99496 * 12 11 9 14 14 H 1.07995 * 120.00519 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99742 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99948 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99970 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47149 * 60.00592 * 17 15 13 19 19 H 1.48498 * 109.47166 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47228 * 300.00734 * 17 15 13 21 21 C 1.46497 * 120.00038 * 174.95495 * 11 9 2 22 22 C 1.53001 * 109.47004 * 95.12550 * 21 11 9 23 23 C 1.52997 * 117.49954 * 243.47147 * 22 21 11 24 24 C 1.52995 * 117.49795 * 174.84755 * 22 21 11 25 25 H 1.09008 * 109.46734 * 275.07958 * 1 2 3 26 26 H 1.09001 * 109.47167 * 35.07498 * 1 2 3 27 27 H 1.08994 * 109.47321 * 155.08160 * 1 2 3 28 28 H 1.08002 * 119.99609 * 357.21433 * 3 2 1 29 29 H 1.07998 * 126.73971 * 359.96721 * 5 4 3 30 30 H 1.08008 * 126.39888 * 180.02562 * 6 5 4 31 31 H 1.08001 * 125.48660 * 180.02562 * 7 6 5 32 32 H 1.08995 * 109.47278 * 209.99933 * 12 11 9 33 33 H 1.09001 * 109.46829 * 329.99655 * 12 11 9 34 34 H 0.97001 * 119.99514 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.47391 * 215.12883 * 21 11 9 36 36 H 1.09002 * 109.47193 * 335.13109 * 21 11 9 37 37 H 1.08997 * 115.55014 * 29.17703 * 22 21 11 38 38 H 1.09004 * 117.50090 * 359.97438 * 23 22 21 39 39 H 1.09000 * 117.50391 * 145.02262 * 23 22 21 40 40 H 1.09002 * 117.50041 * 214.98178 * 24 22 21 41 41 H 1.09007 * 117.50232 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.1745 0.0000 4 6 3.6000 1.1752 0.0595 5 6 4.4081 2.2870 0.1771 6 6 5.7306 1.8188 0.1981 7 6 5.6798 0.4722 0.0943 8 8 4.3982 0.0881 0.0164 9 6 2.2147 -1.2259 -0.0005 10 8 2.4390 -1.7991 -1.0514 11 7 2.6404 -1.7588 1.1620 12 6 2.4633 -1.0202 2.4146 13 6 1.1344 -1.3809 3.0270 14 1 0.4866 -2.0897 2.5327 15 6 0.7459 -0.8066 4.2188 16 7 1.5350 0.0562 4.8209 17 14 -0.9010 -1.2542 4.9782 18 1 -0.9389 -2.7129 5.2537 19 1 -1.0805 -0.5054 6.2479 20 1 -1.9930 -0.8999 4.0363 21 6 3.2745 -3.0794 1.1737 22 6 4.7947 -2.9156 1.1172 23 6 5.5202 -3.4732 -0.1090 24 6 5.6466 -4.1803 1.2419 25 1 -0.3633 0.0910 1.0237 26 1 -0.3633 0.8410 -0.5905 27 1 -0.3634 -0.9319 -0.4330 28 1 1.6462 2.1093 -0.0455 29 1 4.0860 3.3159 0.2405 30 1 6.6228 2.4219 0.2815 31 1 6.5342 -0.1883 0.0813 32 1 3.2646 -1.2803 3.1062 33 1 2.4915 0.0505 2.2122 34 1 1.2614 0.4605 5.6592 35 1 2.9996 -3.6064 2.0872 36 1 2.9384 -3.6515 0.3089 37 1 5.1856 -1.9997 1.5603 38 1 4.9146 -3.9572 -0.8753 39 1 6.3887 -2.9242 -0.4729 40 1 6.5982 -4.0964 1.7669 41 1 5.1241 -5.1292 1.3638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847440708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:26 Heat of formation + Delta-G solvation = 6.955487 kcal Electronic energy + Delta-G solvation = -24252.636316 eV Core-core repulsion = 20907.093447 eV Total energy + Delta-G solvation = -3345.542870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.38134 -41.02881 -38.33918 -36.46020 -35.76752 -34.38805 -33.85542 -31.29679 -29.62133 -28.21973 -27.16357 -25.11488 -23.84362 -23.15153 -22.47838 -21.86343 -21.25301 -19.45402 -18.60182 -18.33378 -17.61823 -16.96205 -16.79312 -16.43737 -16.13369 -15.83342 -15.19870 -15.11362 -14.40821 -14.12722 -14.08850 -13.96512 -13.69805 -13.64485 -13.36335 -13.24345 -13.20342 -12.86671 -12.62147 -12.58477 -12.49549 -12.33937 -12.07668 -11.74218 -11.30857 -11.21613 -10.86988 -10.72502 -10.65646 -10.48867 -9.40754 -8.62629 -8.16170 -6.30872 -0.10281 1.42978 1.43508 1.44235 1.51795 1.66154 2.02091 2.28642 2.37986 2.56262 2.98998 3.13491 3.79592 3.83670 3.93588 4.03843 4.13915 4.14743 4.15853 4.41836 4.46610 4.60767 4.70463 4.76454 4.77517 4.82131 4.83676 4.94125 4.98429 5.01115 5.08798 5.20227 5.23518 5.26870 5.30024 5.36576 5.45255 5.69031 5.73677 5.88545 6.09930 6.28755 6.59747 6.84050 7.30630 7.43521 8.89269 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.007195 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.491070 B = 3890.413301 C = 4637.620179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.141 4.141 3 C -0.073 4.073 4 C -0.023 4.023 5 C -0.188 4.188 6 C -0.217 4.217 7 C -0.047 4.047 8 O -0.171 6.171 9 C 0.564 3.436 10 O -0.595 6.595 11 N -0.580 5.580 12 C 0.265 3.735 13 C -0.540 4.540 14 H 0.053 0.947 15 C 0.025 3.975 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.148 3.852 22 C -0.173 4.173 23 C -0.166 4.166 24 C -0.158 4.158 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.182 0.818 29 H 0.172 0.828 30 H 0.177 0.823 31 H 0.220 0.780 32 H 0.006 0.994 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 1.556 -7.021 9.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 C -0.091 4.091 4 C -0.072 4.072 5 C -0.207 4.207 6 C -0.236 4.236 7 C -0.116 4.116 8 O -0.066 6.066 9 C 0.355 3.645 10 O -0.479 6.479 11 N -0.308 5.308 12 C 0.144 3.856 13 C -0.579 4.579 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.558 5.558 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.190 1.190 21 C 0.025 3.975 22 C -0.192 4.192 23 C -0.203 4.203 24 C -0.196 4.196 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.074 0.926 28 H 0.199 0.801 29 H 0.190 0.810 30 H 0.194 0.806 31 H 0.236 0.764 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.230 1.063 -7.382 9.718 hybrid contribution -0.644 -0.035 0.840 1.059 sum 5.586 1.028 -6.542 8.664 Atomic orbital electron populations 1.20668 0.87795 1.03387 1.03284 1.21155 0.98896 0.93231 1.01112 1.20542 0.88335 0.98779 1.01483 1.20328 0.92306 0.85350 1.09234 1.22510 0.92789 0.99376 1.05999 1.22014 0.98737 0.94597 1.08263 1.24751 0.84625 0.97122 1.05053 1.84241 1.17511 1.35005 1.69882 1.17181 0.78123 0.85853 0.83349 1.90711 1.60727 1.64443 1.32050 1.48087 1.56290 1.18561 1.07834 1.18904 0.95353 0.91648 0.79712 1.21585 1.03606 1.25843 1.06838 0.92901 1.25613 1.00387 0.94608 0.96976 1.70032 1.38357 1.29398 1.18052 0.85685 0.80298 0.78294 0.77899 1.20037 1.20837 1.19044 1.20903 0.90833 0.84460 1.01349 1.22484 0.93447 0.98686 1.04630 1.22925 1.02391 1.03745 0.91192 1.23038 1.01408 0.95481 0.99628 0.90406 0.88046 0.92565 0.80135 0.81029 0.80571 0.76405 0.97604 0.95524 0.92461 0.91056 0.91530 0.89397 0.89863 0.88094 0.87154 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.24 10.01 71.24 0.71 -2.53 16 2 C -0.14 -5.66 4.19 -19.65 -0.08 -5.74 16 3 C -0.07 -2.61 8.75 22.49 0.20 -2.41 16 4 C -0.02 -0.83 6.11 23.03 0.14 -0.69 16 5 C -0.19 -5.68 10.90 22.71 0.25 -5.44 16 6 C -0.22 -5.91 10.87 22.06 0.24 -5.67 16 7 C -0.05 -1.41 12.06 67.11 0.81 -0.60 16 8 O -0.17 -6.55 7.86 -5.46 -0.04 -6.59 16 9 C 0.56 25.44 4.26 85.06 0.36 25.80 16 10 O -0.60 -29.20 16.64 -3.98 -0.07 -29.26 16 11 N -0.58 -26.01 1.98 -836.83 -1.66 -27.67 16 12 C 0.26 13.25 4.94 85.63 0.42 13.68 16 13 C -0.54 -28.36 9.37 25.60 0.24 -28.12 16 14 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 15 C 0.02 1.29 5.46 84.65 0.46 1.75 16 16 N -0.92 -51.07 13.29 21.45 0.28 -50.78 16 17 Si 0.95 41.52 29.54 68.60 2.03 43.54 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 C 0.15 5.90 5.71 86.38 0.49 6.40 16 22 C -0.17 -5.86 6.01 -10.80 -0.06 -5.93 16 23 C -0.17 -4.73 10.18 30.59 0.31 -4.41 16 24 C -0.16 -4.08 10.25 30.59 0.31 -3.76 16 25 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 26 H 0.10 2.65 8.11 -2.39 -0.02 2.63 16 27 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 28 H 0.18 4.97 8.06 -2.91 -0.02 4.95 16 29 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.22 4.92 8.06 -2.91 -0.02 4.89 16 32 H 0.01 0.32 8.07 -2.39 -0.02 0.30 16 33 H 0.03 1.41 5.72 -2.39 -0.01 1.40 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 36 H 0.07 2.70 7.08 -2.39 -0.02 2.68 16 37 H 0.09 3.24 8.11 -2.39 -0.02 3.22 16 38 H 0.08 2.54 8.03 -2.39 -0.02 2.53 16 39 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -66.58 351.93 6.36 -60.22 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.01 Total: 28.21 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.81 Total: -17.66 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.37 Total: -78.45 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.11 Total: -35.86 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.58 6.36 -60.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847440708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.173 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds