Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47399 * 2 1 4 4 C 1.38260 * 119.88453 * 265.00233 * 3 2 1 5 5 C 1.37967 * 120.23074 * 180.02562 * 4 3 2 6 6 C 1.39669 * 120.00258 * 359.97438 * 5 4 3 7 7 C 1.47743 * 120.11249 * 180.02562 * 6 5 4 8 8 O 1.21473 * 119.99780 * 185.04379 * 7 6 5 9 9 O 1.34707 * 120.00356 * 5.04123 * 7 6 5 10 10 C 1.45203 * 117.00193 * 185.03429 * 9 7 6 11 11 C 1.52997 * 109.47112 * 184.94089 * 10 9 7 12 12 C 1.50703 * 115.55026 * 54.24143 * 11 10 9 13 13 H 1.07995 * 120.00063 * 215.58893 * 12 11 10 14 14 C 1.37879 * 120.00146 * 35.31778 * 12 11 10 15 15 N 1.31524 * 119.99604 * 355.74228 * 14 12 11 16 16 Si 1.86796 * 120.00374 * 175.73918 * 14 12 11 17 17 H 1.48494 * 109.47002 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46746 * 119.99979 * 16 14 12 19 19 H 1.48494 * 109.47173 * 239.99812 * 16 14 12 20 20 C 1.52998 * 117.49984 * 199.91209 * 11 10 9 21 21 C 1.52995 * 117.50108 * 268.57212 * 11 10 9 22 22 C 1.39505 * 119.77058 * 0.27621 * 6 5 4 23 23 C 1.38673 * 119.76553 * 359.48981 * 22 6 5 24 24 N 1.39710 * 120.00204 * 180.21190 * 23 22 6 25 25 H 1.09002 * 109.46917 * 59.99588 * 1 2 3 26 26 H 1.08993 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46726 * 299.99873 * 1 2 3 28 28 H 1.09001 * 109.46726 * 240.00127 * 2 1 3 29 29 H 1.09002 * 109.46917 * 120.00412 * 2 1 3 30 30 H 1.07999 * 119.88429 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.99695 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.46757 * 64.94101 * 10 9 7 33 33 H 1.09004 * 109.46674 * 304.94109 * 10 9 7 34 34 H 0.96993 * 119.99726 * 185.00328 * 15 14 12 35 35 H 1.09000 * 117.49816 * 215.00702 * 20 11 10 36 36 H 1.09001 * 117.49687 * 0.02666 * 20 11 10 37 37 H 1.08999 * 117.49783 * 359.97438 * 21 11 10 38 38 H 1.09003 * 117.50164 * 144.97522 * 21 11 10 39 39 H 1.07994 * 120.11517 * 179.70677 * 22 6 5 40 40 H 0.97000 * 120.00294 * 180.27981 * 24 23 22 41 41 H 0.97006 * 119.99614 * 0.27575 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3605 2.0354 -1.1942 5 6 2.8217 3.3357 -1.2025 6 6 2.9579 4.0360 -0.0017 7 6 3.4510 5.4288 -0.0078 8 8 3.6559 6.0050 1.0417 9 8 3.6733 6.0595 -1.1771 10 6 4.2630 7.3847 -1.1096 11 6 4.3254 7.9873 -2.5145 12 6 3.0190 8.0234 -3.2650 13 1 3.0056 7.8671 -4.3335 14 6 1.8403 8.2504 -2.5866 15 7 1.8454 8.3519 -1.2753 16 14 0.2363 8.4137 -3.5298 17 1 0.4991 8.2609 -4.9833 18 1 -0.7093 7.3587 -3.0846 19 1 -0.3561 9.7505 -3.2712 20 6 5.3053 9.1393 -2.7462 21 6 5.6006 7.7543 -3.3271 22 6 2.6319 3.4142 1.2037 23 6 2.1646 2.1085 1.2005 24 7 1.8324 1.4825 2.4045 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2563 1.4955 -2.1237 31 1 3.0773 3.8121 -2.1375 32 1 5.2704 7.3136 -0.6996 33 1 3.6536 8.0212 -0.4680 34 1 1.0087 8.4388 -0.7924 35 1 5.0049 9.9233 -3.4413 36 1 5.9057 9.4676 -1.8978 37 1 6.3953 7.1720 -2.8607 38 1 5.4947 7.6267 -4.4045 39 1 2.7396 3.9489 2.1358 40 1 1.5095 0.5678 2.4026 41 1 1.9248 1.9625 3.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849737706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -41.536910 kcal Electronic energy + Delta-G solvation = -22837.651708 eV Core-core repulsion = 19490.006050 eV Total energy + Delta-G solvation = -3347.645658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91355 -38.78962 -36.65999 -34.85046 -34.60045 -33.70873 -32.13326 -29.82556 -28.54017 -26.50047 -25.40026 -24.34947 -22.25451 -21.63964 -21.20528 -19.92045 -19.10977 -17.42033 -17.11835 -16.46304 -15.73700 -15.50393 -15.24132 -14.82050 -14.51988 -14.20233 -13.84656 -13.64488 -13.51284 -13.39804 -13.04885 -12.57186 -12.16517 -11.90320 -11.80661 -11.51804 -11.35156 -11.00057 -10.98317 -10.85743 -10.71811 -10.48052 -10.46517 -10.29547 -9.88570 -9.47641 -9.22102 -8.93362 -8.73032 -8.62705 -8.20876 -7.43704 -5.93830 -4.07648 1.11011 1.75603 3.27157 3.29015 3.37595 3.40922 3.57354 3.97108 4.20779 4.39561 4.74553 4.80246 5.00875 5.10930 5.22931 5.42351 5.43310 5.53161 5.57372 5.62620 5.74139 5.87987 5.92293 6.05027 6.08564 6.14208 6.26277 6.36271 6.54288 6.63874 6.67058 6.70682 6.78905 6.85733 6.94508 7.03625 7.26926 7.48634 7.52650 7.68930 7.73504 7.96728 8.36877 8.79056 8.92327 9.54527 11.00594 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.004596 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.232095 B = 6091.421981 C = 6728.005059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.087 4.087 5 C -0.113 4.113 6 C -0.066 4.066 7 C 0.500 3.500 8 O -0.523 6.523 9 O -0.313 6.313 10 C 0.119 3.881 11 C 0.046 3.954 12 C -0.479 4.479 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.882 5.882 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.196 4.196 21 C -0.209 4.209 22 C -0.136 4.136 23 C 0.202 3.798 24 N -0.880 5.880 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.019 0.981 33 H 0.119 0.881 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.396 0.604 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -15.690 4.372 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.133 4.133 6 C -0.067 4.067 7 C 0.345 3.655 8 O -0.416 6.416 9 O -0.227 6.227 10 C 0.046 3.954 11 C 0.045 3.955 12 C -0.517 4.517 13 H 0.081 0.919 14 C -0.130 4.130 15 N -0.519 5.519 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.234 4.234 21 C -0.246 4.246 22 C -0.159 4.159 23 C 0.099 3.901 24 N -0.422 5.422 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.037 0.963 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.150 0.850 40 H 0.225 0.775 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.740 -15.352 4.743 16.085 hybrid contribution -0.860 0.140 -0.006 0.871 sum -1.600 -15.211 4.736 16.012 Atomic orbital electron populations 1.21784 0.94980 1.01326 1.02604 1.20365 0.95918 0.92727 1.02372 1.19503 1.06204 0.96758 0.92014 1.20768 0.98291 0.94659 0.96845 1.21358 0.99645 0.94199 0.98066 1.19068 1.02029 0.91635 0.94016 1.21000 0.75100 0.86488 0.82947 1.90723 1.49906 1.67248 1.33685 1.86486 1.72557 1.32687 1.30972 1.22856 0.93453 0.79998 0.99132 1.18937 0.89629 0.95228 0.91660 1.20477 0.89299 1.48185 0.93707 0.91942 1.24964 0.99106 0.94023 0.94876 1.69777 1.26504 1.49515 1.06130 0.86454 0.83317 0.77698 0.80092 1.19684 1.20907 1.20959 1.22985 1.06190 0.91972 1.02284 1.22945 1.02398 0.99855 0.99409 1.20603 1.03712 0.93444 0.98150 1.17309 0.95084 0.91363 0.86376 1.42433 1.76859 1.17324 1.05543 0.92206 0.92663 0.92657 0.90875 0.91789 0.85622 0.84229 0.96278 0.86303 0.92796 0.89835 0.91455 0.91285 0.90343 0.85005 0.77509 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 37.16 0.37 -0.90 16 2 C -0.08 -0.69 5.49 -27.88 -0.15 -0.84 16 3 C -0.14 -1.74 5.16 -104.34 -0.54 -2.28 16 4 C -0.09 -1.19 9.65 -39.67 -0.38 -1.57 16 5 C -0.11 -1.90 9.61 -39.15 -0.38 -2.28 16 6 C -0.07 -1.25 5.87 -105.01 -0.62 -1.86 16 7 C 0.50 11.52 7.88 34.62 0.27 11.79 16 8 O -0.52 -13.00 16.05 -19.25 -0.31 -13.31 16 9 O -0.31 -7.77 8.99 -40.51 -0.36 -8.13 16 10 C 0.12 3.02 4.45 37.16 0.17 3.18 16 11 C 0.05 1.16 2.21 -155.66 -0.34 0.81 16 12 C -0.48 -13.06 8.79 -34.44 -0.30 -13.36 16 13 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 14 C 0.07 1.99 5.35 -17.81 -0.10 1.89 16 15 N -0.88 -24.89 10.16 55.43 0.56 -24.32 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.20 -4.40 9.96 -26.70 -0.27 -4.66 16 21 C -0.21 -4.56 9.92 -26.70 -0.26 -4.82 16 22 C -0.14 -2.23 9.44 -38.95 -0.37 -2.60 16 23 C 0.20 2.67 6.73 -83.83 -0.56 2.11 16 24 N -0.88 -8.35 8.99 32.39 0.29 -8.06 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 29 H 0.06 0.49 6.80 -51.93 -0.35 0.14 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.14 2.43 7.62 -52.48 -0.40 2.03 16 32 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.12 3.35 5.76 -51.93 -0.30 3.05 16 34 H 0.26 7.18 8.32 -40.82 -0.34 6.84 16 35 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.13 2.14 7.66 -52.49 -0.40 1.74 16 40 H 0.40 2.93 6.92 -40.82 -0.28 2.65 16 41 H 0.40 3.26 8.84 -40.82 -0.36 2.90 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -30.80 346.36 -8.95 -39.75 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.86 Total: 8.02 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -3.46 Total: -15.39 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.85 Total: -32.38 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.67 Total: -21.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.80 -8.95 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849737706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.786 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds