Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35632 * 120.00049 * 2 1 4 4 C 1.41598 * 119.99996 * 186.14464 * 3 2 1 5 5 C 1.37949 * 126.10617 * 175.18164 * 4 3 2 6 6 C 1.40304 * 106.53344 * 179.73750 * 5 4 3 7 7 C 1.35157 * 107.20793 * 0.02562 * 6 5 4 8 8 O 1.34024 * 109.03135 * 359.97438 * 7 6 5 9 9 C 1.41548 * 120.00231 * 179.97438 * 2 1 3 10 10 O 1.21782 * 119.99561 * 76.38454 * 9 2 1 11 11 N 1.34776 * 120.00683 * 256.39121 * 9 2 1 12 12 C 1.46928 * 120.62749 * 5.56760 * 11 9 2 13 13 C 1.53191 * 108.77669 * 126.37081 * 12 11 9 14 14 C 1.53043 * 109.31077 * 54.63263 * 13 12 11 15 15 C 1.53033 * 109.54009 * 298.64061 * 14 13 12 16 16 H 1.09000 * 109.49829 * 301.37631 * 15 14 13 17 17 C 1.50706 * 109.49784 * 181.31617 * 15 14 13 18 18 H 1.07997 * 119.99933 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00192 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99849 * 359.97438 * 19 17 15 21 21 Si 1.86794 * 120.00103 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46961 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47102 * 119.99603 * 21 19 17 24 24 H 1.48495 * 109.47308 * 239.99891 * 21 19 17 25 25 C 1.46925 * 120.63464 * 185.29196 * 11 9 2 26 26 H 1.08995 * 109.47248 * 94.98961 * 1 2 3 27 27 H 1.09010 * 109.47230 * 214.99254 * 1 2 3 28 28 H 1.08997 * 109.47150 * 334.98915 * 1 2 3 29 29 H 1.08002 * 119.99658 * 6.14550 * 3 2 1 30 30 H 1.08005 * 126.73562 * 359.71485 * 5 4 3 31 31 H 1.08001 * 126.40106 * 180.02562 * 6 5 4 32 32 H 1.07995 * 125.48700 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.59319 * 246.16207 * 12 11 9 34 34 H 1.09011 * 109.58576 * 6.44722 * 12 11 9 35 35 H 1.09000 * 109.49959 * 174.58797 * 13 12 11 36 36 H 1.09003 * 109.49723 * 294.68877 * 13 12 11 37 37 H 1.09002 * 109.45313 * 58.65933 * 14 13 12 38 38 H 1.08995 * 109.45824 * 178.61335 * 14 13 12 39 39 H 0.97003 * 120.00028 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.58186 * 353.41841 * 25 11 9 41 41 H 1.09000 * 109.58532 * 113.83950 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1746 0.0000 4 6 3.5950 1.1781 -0.1313 5 6 4.3985 2.2941 -0.2403 6 6 5.7178 1.8278 -0.3425 7 6 5.6697 0.4780 -0.2937 8 8 4.3930 0.0905 -0.1666 9 6 2.2147 -1.2258 0.0005 10 8 2.3042 -1.8777 -1.0242 11 7 2.7896 -1.6717 1.1351 12 6 2.5890 -0.9609 2.4053 13 6 2.0767 -1.9558 3.4515 14 6 3.0424 -3.1399 3.5394 15 6 3.1045 -3.8513 2.1859 16 1 2.1070 -4.1911 1.9074 17 6 4.0308 -5.0362 2.2825 18 1 4.5262 -5.2596 3.2158 19 6 4.2466 -5.8343 1.1791 20 7 3.6437 -5.5619 0.0425 21 14 5.3952 -7.3025 1.2987 22 1 5.9441 -7.3907 2.6757 23 1 4.6450 -8.5449 0.9839 24 1 6.5100 -7.1389 0.3315 25 6 3.6239 -2.8811 1.1265 26 1 -0.3633 -0.0894 -1.0237 27 1 -0.3634 -0.8420 0.5894 28 1 -0.3633 0.9313 0.4345 29 1 1.6497 2.1072 0.1001 30 1 4.0754 3.3247 -0.2462 31 1 6.6061 2.4341 -0.4416 32 1 6.5228 -0.1821 -0.3476 33 1 3.5350 -0.5346 2.7389 34 1 1.8578 -0.1644 2.2667 35 1 2.0150 -1.4637 4.4221 36 1 1.0887 -2.3131 3.1607 37 1 4.0358 -2.7791 3.8060 38 1 2.6932 -3.8374 4.3007 39 1 3.7952 -6.1237 -0.7337 40 1 3.5736 -3.3526 0.1450 41 1 4.6561 -2.6145 1.3536 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = -6.156925 kcal Electronic energy + Delta-G solvation = -24134.951973 eV Core-core repulsion = 20788.840506 eV Total energy + Delta-G solvation = -3346.111466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.33877 -39.63496 -36.77044 -34.89737 -33.19464 -32.82243 -31.59866 -30.34178 -29.69380 -26.42043 -25.24948 -24.92110 -22.39749 -21.74643 -21.41212 -20.66328 -19.16008 -18.12092 -17.16790 -16.22615 -15.91565 -15.68609 -15.24273 -14.86544 -14.50077 -13.88475 -13.65565 -13.51958 -13.13923 -13.05203 -12.78259 -12.61790 -12.57434 -12.35096 -12.25583 -12.04916 -11.73650 -11.50415 -10.98546 -10.90823 -10.45744 -10.39097 -10.23255 -10.16785 -9.83362 -9.69635 -9.22325 -9.06418 -8.82379 -8.39829 -7.64130 -7.59847 -5.96025 -4.05090 0.86709 2.41247 2.96837 3.10161 3.31122 3.39480 3.42513 3.44207 3.97515 4.45182 4.75634 4.98147 5.07836 5.13469 5.33293 5.35574 5.40739 5.48921 5.57055 5.64244 5.69805 5.75055 5.90389 5.97033 6.04065 6.14554 6.22369 6.33549 6.35434 6.39100 6.64232 6.66832 6.74465 6.91754 7.02294 7.22715 7.31101 7.40473 7.69741 7.93303 8.05200 8.34882 8.43881 8.93888 9.00910 9.60266 11.08898 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.005714 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.184306 B = 4899.054552 C = 5394.254397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.078 4.078 4 C 0.006 3.994 5 C -0.191 4.191 6 C -0.224 4.224 7 C -0.022 4.022 8 O -0.143 6.143 9 C 0.546 3.454 10 O -0.534 6.534 11 N -0.590 5.590 12 C 0.113 3.887 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.879 5.879 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.119 3.881 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.262 0.738 40 H 0.122 0.878 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 16.436 2.531 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.126 4.126 3 C -0.097 4.097 4 C -0.044 4.044 5 C -0.211 4.211 6 C -0.243 4.243 7 C -0.092 4.092 8 O -0.037 6.037 9 C 0.334 3.666 10 O -0.412 6.412 11 N -0.322 5.322 12 C -0.011 4.011 13 C -0.171 4.171 14 C -0.148 4.148 15 C 0.019 3.981 16 H 0.046 0.954 17 C -0.558 4.558 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.516 5.516 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.001 4.001 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.216 0.784 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.140 0.860 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.063 15.697 1.824 15.937 hybrid contribution 0.881 -0.538 0.054 1.033 sum -1.182 15.159 1.877 15.321 Atomic orbital electron populations 1.20731 0.89322 1.02984 1.03241 1.21342 0.97772 0.94158 0.99318 1.20198 0.88263 0.98004 1.03257 1.19922 0.91799 0.84672 1.07993 1.22081 0.92650 0.98543 1.07776 1.21634 0.98184 0.94600 1.09874 1.24289 0.85059 0.95920 1.03905 1.84341 1.16765 1.33880 1.68716 1.16866 0.79768 0.85463 0.84533 1.90880 1.60838 1.57552 1.31919 1.48378 1.49095 1.28380 1.06317 1.21555 1.00101 0.94399 0.85000 1.21946 1.00251 0.97588 0.97315 1.21618 0.97247 0.95415 1.00473 1.18909 0.97525 0.92560 0.89069 0.95417 1.21106 1.27545 1.10329 0.96835 0.92392 1.25057 0.95890 0.97593 0.95514 1.69913 1.42153 1.38488 1.01065 0.86563 0.80800 0.82799 0.78004 1.19819 1.21018 1.21027 1.22094 0.90427 0.81683 1.05937 0.90079 0.91033 0.90938 0.83064 0.83426 0.83563 0.78358 0.92527 0.91351 0.92334 0.92198 0.93296 0.93099 0.92758 0.86030 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.02 36.00 0.36 -0.93 16 2 C -0.12 -1.94 3.76 -104.30 -0.39 -2.33 16 3 C -0.08 -1.06 9.09 -39.23 -0.36 -1.41 16 4 C 0.01 0.10 6.70 -38.41 -0.26 -0.16 16 5 C -0.19 -2.46 10.90 -38.91 -0.42 -2.89 16 6 C -0.22 -2.85 10.87 -39.90 -0.43 -3.28 16 7 C -0.02 -0.32 12.06 29.64 0.36 0.03 16 8 O -0.14 -2.59 7.69 4.66 0.04 -2.56 16 9 C 0.55 11.54 4.49 -15.00 -0.07 11.47 16 10 O -0.53 -13.93 16.50 5.12 0.08 -13.84 16 11 N -0.59 -12.26 2.21 -176.46 -0.39 -12.65 16 12 C 0.11 1.89 6.18 -3.71 -0.02 1.87 16 13 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 14 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 15 C 0.04 0.97 2.24 -91.88 -0.21 0.76 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.88 -26.01 11.39 55.43 0.63 -25.37 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.12 2.95 5.39 -3.94 -0.02 2.92 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.92 8.13 -51.92 -0.42 0.49 16 28 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 29 H 0.15 1.40 8.03 -52.49 -0.42 0.98 16 30 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.20 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.97 6.19 -51.92 -0.32 0.65 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 3.54 5.10 -51.93 -0.26 3.28 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -33.61 336.22 -7.78 -41.39 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.04 Total: 3.10 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.15 Total: -11.55 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.24 Total: -38.02 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.12 Total: -16.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.61 -7.78 -41.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.237 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds