Wall clock time and date at job start Tue Mar 31 2020 07:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52992 * 109.47339 * 2 1 4 4 C 1.53001 * 109.46878 * 120.00096 * 2 1 3 5 5 C 1.52995 * 109.47407 * 64.99665 * 4 2 1 6 6 N 1.46505 * 109.47440 * 179.97438 * 5 4 2 7 7 C 1.46494 * 120.00179 * 275.00382 * 6 5 4 8 8 C 1.50700 * 109.47232 * 274.99777 * 7 6 5 9 9 H 1.08004 * 119.99738 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99947 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00103 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99504 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47536 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47100 * 120.00397 * 12 10 8 15 15 H 1.48503 * 109.46955 * 239.99616 * 12 10 8 16 16 S 1.65599 * 119.99751 * 94.99846 * 6 5 4 17 17 O 1.42105 * 104.27797 * 210.00434 * 16 6 5 18 18 O 1.42101 * 104.27901 * 337.86142 * 16 6 5 19 19 C 1.81397 * 104.44825 * 93.93322 * 16 6 5 20 20 C 1.53784 * 113.61407 * 284.13454 * 19 16 6 21 21 C 1.53961 * 87.01860 * 220.04834 * 20 19 16 22 22 C 1.53777 * 87.11159 * 25.36418 * 21 20 19 23 23 H 1.09003 * 109.47708 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47577 * 300.00048 * 1 2 3 25 25 H 1.09000 * 109.47079 * 60.00052 * 1 2 3 26 26 H 1.09004 * 109.47364 * 239.99241 * 2 1 3 27 27 H 1.09001 * 109.47544 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47322 * 299.99650 * 3 2 1 29 29 H 1.09000 * 109.47336 * 60.00063 * 3 2 1 30 30 H 1.09005 * 109.47139 * 304.99903 * 4 2 1 31 31 H 1.08995 * 109.47340 * 185.00041 * 4 2 1 32 32 H 1.08997 * 109.47216 * 60.00459 * 5 4 2 33 33 H 1.09002 * 109.47437 * 300.00168 * 5 4 2 34 34 H 1.09000 * 109.47063 * 34.99771 * 7 6 5 35 35 H 1.09002 * 109.47244 * 154.99382 * 7 6 5 36 36 H 0.97005 * 119.99850 * 180.02562 * 11 10 8 37 37 H 1.09001 * 112.85364 * 55.33466 * 19 16 6 38 38 H 1.08996 * 113.61526 * 334.56949 * 20 19 16 39 39 H 1.09001 * 113.61308 * 105.46918 * 20 19 16 40 40 H 1.08997 * 113.53566 * 270.80979 * 21 20 19 41 41 H 1.08999 * 113.66052 * 139.93622 * 21 20 19 42 42 H 1.09004 * 113.61420 * 220.08798 * 22 21 20 43 43 H 1.09001 * 113.69123 * 89.19517 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1954 1.1880 6 7 2.1239 -2.8862 2.3840 7 6 3.4920 -3.4086 2.4204 8 6 3.5236 -4.7783 1.7927 9 1 2.6153 -5.2161 1.4057 10 6 4.7120 -5.4730 1.7133 11 7 5.8179 -4.9402 2.1849 12 14 4.7509 -7.1711 0.9359 13 1 3.3847 -7.5416 0.4871 14 1 5.6698 -7.1605 -0.2306 15 1 5.2292 -8.1615 1.9337 16 16 1.1298 -3.0764 3.6947 17 8 2.0144 -3.0873 4.8068 18 8 0.1534 -2.0549 3.5452 19 6 0.3808 -4.7119 3.4611 20 6 -0.7247 -4.7363 2.3924 21 6 -1.5020 -5.6751 3.3330 22 6 -0.7130 -5.0413 4.4908 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6052 -0.2617 2.1370 31 1 3.1261 -0.6444 1.2952 32 1 2.0697 -2.6550 0.3004 33 1 0.5487 -2.2724 1.1421 34 1 4.1511 -2.7399 1.8667 35 1 3.8281 -3.4753 3.4551 36 1 6.6540 -5.4288 2.1287 37 1 1.1208 -5.5033 3.3420 38 1 -1.2079 -3.7709 2.2419 39 1 -0.4188 -5.2077 1.4584 40 1 -1.2775 -6.7304 3.1777 41 1 -2.5719 -5.4699 3.3697 42 1 -0.3976 -5.7587 5.2485 43 1 -1.1920 -4.1594 4.9162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881862731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:31 Heat of formation + Delta-G solvation = -74.945802 kcal Electronic energy + Delta-G solvation = -22760.475942 eV Core-core repulsion = 19546.825517 eV Total energy + Delta-G solvation = -3213.650425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.32148 -37.18718 -36.40500 -35.28343 -34.78647 -32.50472 -28.95323 -26.97244 -26.51244 -25.99140 -25.65742 -23.23864 -21.87005 -19.70579 -19.68620 -18.17738 -16.99506 -16.68762 -16.26045 -15.73728 -15.16304 -14.83946 -14.52608 -14.10015 -13.52534 -13.36300 -13.30762 -12.63247 -12.55460 -12.41943 -12.33112 -12.04690 -11.94198 -11.91206 -11.60299 -11.45192 -11.39014 -11.15710 -11.03387 -10.90139 -10.64728 -10.57273 -10.50919 -10.44943 -10.30324 -10.21413 -10.00511 -9.75085 -9.55116 -8.51858 -7.92321 -6.12910 -4.20346 0.99154 3.21673 3.29245 3.31102 3.38131 4.27467 4.34334 4.39933 4.59067 4.74556 4.95013 5.07853 5.14828 5.17862 5.19045 5.21149 5.51351 5.58743 5.67849 5.77999 5.82296 5.85693 5.88416 5.93012 5.97214 5.99252 6.04843 6.10441 6.13418 6.20957 6.38891 6.43887 6.45503 6.54880 6.75299 6.80257 7.38747 7.45671 7.68432 7.84750 8.14218 8.85223 9.46097 10.94772 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.007699 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.564463 B = 3636.012352 C = 5105.842582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.134 4.134 5 C 0.135 3.865 6 N -0.983 5.983 7 C 0.244 3.756 8 C -0.544 4.544 9 H 0.063 0.937 10 C 0.065 3.935 11 N -0.887 5.887 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.283 1.283 16 S 2.612 3.388 17 O -0.961 6.961 18 O -0.975 6.975 19 C -0.621 4.621 20 C -0.109 4.109 21 C -0.127 4.127 22 C -0.117 4.117 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.264 0.736 37 H 0.160 0.840 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 3.822 -2.391 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.174 4.174 5 C 0.008 3.992 6 N -0.820 5.820 7 C 0.122 3.878 8 C -0.584 4.584 9 H 0.081 0.919 10 C -0.139 4.139 11 N -0.525 5.525 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 S 2.705 3.295 17 O -0.951 6.951 18 O -0.965 6.965 19 C -0.730 4.730 20 C -0.148 4.148 21 C -0.165 4.165 22 C -0.156 4.156 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.177 0.823 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.224 4.404 -1.664 13.099 hybrid contribution 0.346 -1.691 -0.827 1.914 sum -11.878 2.713 -2.491 12.436 Atomic orbital electron populations 1.21891 0.95490 1.01920 1.01238 1.21057 0.95715 0.95959 0.98630 1.21825 1.00991 0.96237 1.01218 1.22090 1.01667 0.95955 0.97644 1.21106 0.97955 0.91154 0.88962 1.57311 1.25598 1.69085 1.30024 1.19195 0.75810 0.93654 0.99151 1.21641 0.94745 1.01821 1.40149 0.91910 1.24962 0.95523 0.98089 0.95306 1.69945 0.99223 1.38016 1.45342 0.86549 0.78155 0.84228 0.79119 1.19733 1.20869 1.20877 1.04773 0.73826 0.76560 0.74313 1.93547 1.63044 1.87268 1.51280 1.93506 1.63270 1.53148 1.86594 1.32098 1.08352 1.26805 1.05706 1.22565 0.94124 1.01283 0.96799 1.22761 0.98743 0.99496 0.95483 1.22569 0.94920 1.01866 0.96226 0.92396 0.92540 0.93369 0.91171 0.92733 0.93162 0.92855 0.91680 0.91373 0.90429 0.91503 0.94266 0.93096 0.92611 0.82256 0.88844 0.89817 0.89657 0.91079 0.89868 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.15 0.33 -1.47 16 2 C -0.09 -1.25 2.92 -90.63 -0.26 -1.51 16 3 C -0.15 -1.72 9.19 37.15 0.34 -1.38 16 4 C -0.13 -2.18 5.01 -26.73 -0.13 -2.32 16 5 C 0.13 2.34 5.03 -4.04 -0.02 2.32 16 6 N -0.98 -20.13 2.70 -115.67 -0.31 -20.44 16 7 C 0.24 6.03 5.42 -5.20 -0.03 6.00 16 8 C -0.54 -14.03 9.38 -34.44 -0.32 -14.35 16 9 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 12 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 S 2.61 51.24 5.30 -107.50 -0.57 50.67 16 17 O -0.96 -22.57 16.63 -57.54 -0.96 -23.53 16 18 O -0.97 -19.08 16.13 -57.54 -0.93 -20.00 16 19 C -0.62 -10.08 4.51 -25.91 -0.12 -10.20 16 20 C -0.11 -1.49 7.66 -25.82 -0.20 -1.69 16 21 C -0.13 -1.48 8.09 -25.83 -0.21 -1.69 16 22 C -0.12 -1.57 7.67 -25.92 -0.20 -1.77 16 23 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 33 H 0.07 1.04 5.91 -51.93 -0.31 0.73 16 34 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.05 1.40 6.88 -51.93 -0.36 1.04 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.16 2.76 8.14 -51.93 -0.42 2.33 16 38 H 0.09 1.21 7.57 -51.93 -0.39 0.82 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -30.76 357.33 -10.28 -41.04 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.70 Total: 2.36 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -0.92 Total: -26.41 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.42 Total: -44.96 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.89 Total: -43.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 51.24 SS G_CDS: -0.57 Total: 50.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.76 -10.28 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881862731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.902 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds