Wall clock time and date at job start Tue Mar 31 2020 06:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47039 * 2 1 4 4 C 1.38676 * 120.41916 * 89.99799 * 3 2 1 5 5 C 1.38626 * 118.42123 * 179.97438 * 4 3 2 6 6 C 1.38221 * 119.16147 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.62147 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47134 * 124.99917 * 7 6 5 9 9 O 1.20825 * 120.00353 * 0.02562 * 8 7 6 10 10 O 1.34226 * 119.99926 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00211 * 175.18976 * 10 8 7 12 12 C 1.50702 * 112.84811 * 54.50029 * 11 10 8 13 13 H 1.07996 * 120.00341 * 244.95874 * 12 11 10 14 14 C 1.37881 * 119.99630 * 64.95813 * 12 11 10 15 15 N 1.31508 * 120.00006 * 354.95836 * 14 12 11 16 16 Si 1.86798 * 119.99829 * 174.95684 * 14 12 11 17 17 H 1.48504 * 109.47114 * 89.99915 * 16 14 12 18 18 H 1.48497 * 109.47065 * 210.00067 * 16 14 12 19 19 H 1.48498 * 109.47236 * 330.00120 * 16 14 12 20 20 C 1.53779 * 113.61318 * 283.20164 * 11 10 8 21 21 C 1.53786 * 87.07906 * 220.01713 * 20 11 10 22 22 C 1.53777 * 87.08094 * 25.43147 * 21 20 11 23 23 N 1.31855 * 120.76452 * 0.02562 * 6 5 4 24 24 C 1.31879 * 121.72703 * 359.69742 * 23 6 5 25 25 H 1.08994 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47242 * 300.00571 * 1 2 3 27 27 H 1.09007 * 109.46772 * 60.00019 * 1 2 3 28 28 H 1.08996 * 109.47500 * 239.99876 * 2 1 3 29 29 H 1.09004 * 109.47026 * 119.99524 * 2 1 3 30 30 H 1.08004 * 120.78969 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.41671 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47511 * 245.00153 * 7 6 5 33 33 H 1.09004 * 109.46973 * 5.00394 * 7 6 5 34 34 H 0.97000 * 120.00085 * 184.99793 * 15 14 12 35 35 H 1.09002 * 113.61652 * 334.56246 * 20 11 10 36 36 H 1.09001 * 113.61787 * 105.46432 * 20 11 10 37 37 H 1.09000 * 113.61057 * 270.87605 * 21 20 11 38 38 H 1.09000 * 113.69296 * 139.99458 * 21 20 11 39 39 H 1.09001 * 113.60897 * 220.02036 * 22 21 20 40 40 H 1.08995 * 113.69378 * 89.12987 * 22 21 20 41 41 H 1.07996 * 119.62271 * 180.31098 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2663 2.0828 1.1959 5 6 2.7286 3.3888 1.1475 6 6 2.9390 3.9837 -0.0822 7 6 3.4408 5.4033 -0.1469 8 6 4.6938 5.4555 -0.9825 9 8 5.1339 4.4440 -1.4755 10 8 5.3210 6.6259 -1.1792 11 6 6.5789 6.5862 -1.9035 12 6 6.4619 5.9044 -3.2424 13 1 6.9902 4.9805 -3.4260 14 6 5.6804 6.4602 -4.2331 15 7 4.9591 7.5301 -3.9790 16 14 5.6461 5.6934 -5.9361 17 1 4.5661 4.6761 -5.9992 18 1 5.3917 6.7490 -6.9491 19 1 6.9531 5.0456 -6.2137 20 6 7.7615 6.0866 -1.0570 21 6 8.6088 7.1714 -1.7429 22 6 7.2978 7.9442 -1.9644 23 7 2.7047 3.3240 -1.1995 24 6 2.2697 2.0790 -1.1916 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.0925 1.5925 2.1424 31 1 2.9212 3.9348 2.0593 32 1 2.6776 6.0385 -0.5963 33 1 3.6610 5.7570 0.8604 34 1 4.3544 7.8786 -4.6526 35 1 7.6308 6.2464 0.0132 36 1 8.0736 5.0707 -1.2993 37 1 9.0805 6.8376 -2.6671 38 1 9.3039 7.6744 -1.0707 39 1 7.2356 8.4279 -2.9392 40 1 7.0391 8.6124 -1.1430 41 1 2.0938 1.5691 -2.1272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892983083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:33 Heat of formation + Delta-G solvation = -36.697491 kcal Electronic energy + Delta-G solvation = -23095.798072 eV Core-core repulsion = 19748.362267 eV Total energy + Delta-G solvation = -3347.435805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23576 -38.99442 -37.00562 -34.90434 -33.93023 -32.18986 -32.08986 -31.17964 -27.78279 -26.00077 -24.50451 -23.89020 -23.52935 -22.71485 -21.13520 -19.65282 -18.47839 -16.92723 -16.48005 -16.11031 -15.29998 -15.27729 -14.98891 -14.74697 -14.37080 -13.97705 -13.92246 -13.73454 -13.39036 -12.92190 -12.67370 -12.52015 -12.13284 -12.03556 -11.61318 -11.49278 -11.38521 -11.06836 -10.99254 -10.92977 -10.73923 -10.30690 -10.20118 -9.83629 -9.71041 -9.58506 -9.16607 -9.00913 -8.70517 -8.60285 -8.42028 -8.35145 -5.99895 -4.07567 1.26188 1.51171 3.35854 3.42033 3.45619 3.71538 3.85587 4.31355 4.46978 4.49894 4.75102 4.79415 4.98042 5.05312 5.21309 5.29681 5.34291 5.37255 5.61920 5.69276 5.72791 5.75489 5.81099 5.82870 5.96950 5.98055 6.01111 6.06327 6.27767 6.30218 6.38827 6.51451 6.58006 6.68418 6.90492 6.93077 7.15625 7.38934 7.63747 7.90638 8.05251 8.35615 8.53693 8.92929 9.42130 9.60149 11.05224 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018562 B = 0.004732 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.081678 B = 5915.321264 C = 6802.771825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.078 4.078 5 C -0.167 4.167 6 C 0.147 3.853 7 C -0.074 4.074 8 C 0.466 3.534 9 O -0.485 6.485 10 O -0.354 6.354 11 C 0.242 3.758 12 C -0.501 4.501 13 H 0.065 0.935 14 C 0.076 3.924 15 N -0.868 5.868 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.162 4.162 21 C -0.131 4.131 22 C -0.107 4.107 23 N -0.444 5.444 24 C 0.108 3.892 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.489 -8.325 10.854 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.187 4.187 6 C 0.009 3.991 7 C -0.113 4.113 8 C 0.305 3.695 9 O -0.371 6.371 10 O -0.270 6.270 11 C 0.208 3.792 12 C -0.538 4.538 13 H 0.083 0.917 14 C -0.129 4.129 15 N -0.505 5.505 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.200 4.200 21 C -0.168 4.168 22 C -0.145 4.145 23 N -0.152 5.152 24 C -0.050 4.050 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.235 -8.001 9.768 14.082 hybrid contribution -0.309 -0.874 -0.168 0.943 sum -6.544 -8.875 9.600 14.620 Atomic orbital electron populations 1.21757 0.94789 1.01590 1.02249 1.20427 0.96008 0.92143 1.02968 1.20873 1.01943 0.97614 0.94450 1.21320 0.96983 0.94199 0.97851 1.21887 1.02184 0.95999 0.98616 1.20714 0.94557 0.95337 0.88522 1.20297 0.96670 0.92753 1.01536 1.22278 0.84613 0.83121 0.79452 1.90590 1.65420 1.35940 1.45186 1.86406 1.38824 1.32998 1.68810 1.21143 0.75403 0.93380 0.89269 1.20875 1.30707 1.08082 0.94155 0.91663 1.24989 0.94975 0.94179 0.98714 1.70015 1.24174 1.21665 1.34627 0.86581 0.78739 0.78942 0.83814 1.20439 1.21215 1.19725 1.23559 0.99556 0.98779 0.98065 1.22507 0.95968 0.98253 1.00071 1.22886 0.93451 0.96837 1.01335 1.67549 1.08495 1.08342 1.30778 1.22647 0.94544 0.90594 0.97239 0.92428 0.92696 0.92439 0.90770 0.91104 0.85278 0.84920 0.86939 0.87713 0.92917 0.92206 0.92201 0.90288 0.93073 0.90595 0.92354 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.73 6.09 -27.88 -0.17 -0.90 16 3 C -0.15 -1.88 5.15 -104.48 -0.54 -2.42 16 4 C -0.08 -0.95 9.86 -39.28 -0.39 -1.33 16 5 C -0.17 -2.30 9.71 -39.44 -0.38 -2.68 16 6 C 0.15 2.59 5.76 -82.59 -0.48 2.11 16 7 C -0.07 -1.34 6.21 -29.03 -0.18 -1.52 16 8 C 0.47 11.19 7.54 36.01 0.27 11.46 16 9 O -0.49 -13.10 13.65 -18.75 -0.26 -13.36 16 10 O -0.35 -9.09 9.93 -39.25 -0.39 -9.48 16 11 C 0.24 6.24 0.50 -90.96 -0.05 6.19 16 12 C -0.50 -14.30 6.29 -34.44 -0.22 -14.52 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.08 2.18 5.24 -17.82 -0.09 2.08 16 15 N -0.87 -25.17 12.54 55.43 0.69 -24.47 16 16 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.16 -3.63 7.28 -25.92 -0.19 -3.82 16 21 C -0.13 -2.68 7.80 -25.92 -0.20 -2.88 16 22 C -0.11 -2.51 7.19 -25.92 -0.19 -2.69 16 23 N -0.44 -8.76 9.23 -9.48 -0.09 -8.84 16 24 C 0.11 1.72 10.86 -17.55 -0.19 1.53 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.13 1.42 7.95 -52.48 -0.42 1.00 16 32 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.10 1.47 7.87 -51.93 -0.41 1.07 16 34 H 0.26 7.25 8.32 -40.82 -0.34 6.91 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.38 8.09 -51.93 -0.42 0.96 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.91 7.63 -51.93 -0.40 1.51 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -33.95 346.71 -8.71 -42.66 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.26 Total: 1.10 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.62 Total: -10.21 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.61 Total: -33.32 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.65 Total: -22.84 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.95 -8.71 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892983083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.966 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds