Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00355 * 2 1 4 4 C 1.52999 * 109.46907 * 119.99721 * 3 2 1 5 5 C 1.52998 * 109.47169 * 240.00285 * 3 2 1 6 6 C 1.52999 * 109.46799 * 299.99487 * 5 3 2 7 7 C 1.50700 * 109.47014 * 0.02562 * 3 2 1 8 8 O 1.21291 * 119.99986 * 240.00331 * 7 3 2 9 9 N 1.34771 * 120.00268 * 59.99553 * 7 3 2 10 10 C 1.39989 * 120.00448 * 185.21094 * 9 7 3 11 11 C 1.38920 * 120.00825 * 213.38054 * 10 9 7 12 12 C 1.38002 * 119.99957 * 179.76135 * 11 10 9 13 13 C 1.38902 * 120.00144 * 0.49307 * 12 11 10 14 14 O 1.35781 * 119.99730 * 179.73930 * 13 12 11 15 15 C 1.34818 * 117.00085 * 185.93230 * 14 13 12 16 16 H 1.08003 * 119.99649 * 5.41236 * 15 14 13 17 17 C 1.38631 * 119.99983 * 185.40633 * 15 14 13 18 18 N 1.31570 * 119.99772 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00119 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47432 * 89.99821 * 19 17 15 21 21 H 1.48500 * 109.47382 * 209.99978 * 19 17 15 22 22 H 1.48499 * 109.47190 * 329.99797 * 19 17 15 23 23 C 1.38904 * 120.00600 * 359.76636 * 13 12 11 24 24 C 1.38007 * 119.99810 * 359.97438 * 23 13 12 25 25 H 1.08001 * 119.99649 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00190 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99649 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47320 * 299.99942 * 4 3 2 29 29 H 1.08997 * 109.47169 * 60.00432 * 4 3 2 30 30 H 1.09004 * 109.46617 * 179.97438 * 4 3 2 31 31 H 1.08990 * 109.47470 * 59.99558 * 5 3 2 32 32 H 1.08995 * 109.47095 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.47117 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47655 * 300.00328 * 6 5 3 35 35 H 1.09000 * 109.47073 * 60.00505 * 6 5 3 36 36 H 0.97003 * 120.00446 * 5.21512 * 9 7 3 37 37 H 1.08005 * 119.99569 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.99445 * 180.21478 * 12 11 10 39 39 H 0.96997 * 120.00384 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.00160 * 179.97438 * 23 13 12 41 41 H 1.08005 * 119.99656 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3860 1.2493 5 6 2.9431 1.3861 -1.2493 6 6 3.9374 0.2232 -1.2492 7 6 1.0843 2.4505 0.0006 8 8 1.0891 3.2529 -0.9089 9 7 0.2032 2.5833 1.0117 10 6 -0.7771 3.5813 0.9595 11 6 -1.2042 4.1975 2.1290 12 6 -2.1671 5.1848 2.0767 13 6 -2.7165 5.5552 0.8559 14 8 -3.6676 6.5229 0.8052 15 6 -4.2473 6.7493 -0.3907 16 1 -4.0134 6.1149 -1.2329 17 6 -5.1437 7.7963 -0.5394 18 7 -5.7098 8.0169 -1.7064 19 14 -5.5479 8.8938 0.9171 20 1 -4.6010 10.0373 0.9531 21 1 -6.9358 9.4044 0.7821 22 1 -5.4281 8.1122 2.1741 23 6 -2.2934 4.9354 -0.3129 24 6 -1.3267 3.9518 -0.2614 25 1 -0.5399 0.9353 -0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 2.3165 1.3284 2.1392 29 1 3.6514 0.5576 1.2493 30 1 3.4885 2.3298 1.2490 31 1 2.3166 1.3283 -2.1392 32 1 3.4885 2.3298 -1.2490 33 1 4.5643 0.2811 -2.1390 34 1 4.5640 0.2808 -0.3593 35 1 3.3923 -0.7208 -1.2492 36 1 0.2482 1.9874 1.7758 37 1 -0.7802 3.9063 3.0786 38 1 -2.4966 5.6662 2.9856 39 1 -6.3367 8.7497 -1.8107 40 1 -2.7210 5.2232 -1.2620 41 1 -0.9980 3.4696 -1.1702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116735186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = -14.787489 kcal Electronic energy + Delta-G solvation = -22648.219654 eV Core-core repulsion = 19301.733939 eV Total energy + Delta-G solvation = -3346.485716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85786 -39.04051 -37.22106 -36.22057 -34.18794 -32.37327 -32.09267 -30.31666 -29.80696 -28.04381 -25.62438 -25.05583 -22.85818 -22.06754 -21.83398 -20.49788 -19.04558 -17.90560 -17.50619 -16.72518 -16.52240 -16.01478 -15.11604 -14.73076 -14.55415 -14.07980 -13.85651 -13.82049 -13.80539 -13.54603 -12.97859 -12.75786 -12.47695 -12.37644 -12.27629 -12.22685 -12.02601 -11.76583 -11.68773 -11.56314 -11.08124 -10.92327 -10.76596 -10.66732 -10.21741 -9.74287 -9.64209 -9.52991 -9.27095 -8.74882 -8.29795 -7.04914 -6.40584 -4.06301 1.96988 2.02040 2.09785 2.81222 3.21362 3.22881 3.27068 3.40783 4.24406 4.39623 4.43161 4.49766 4.70605 4.82721 4.87171 5.04072 5.09741 5.13313 5.27644 5.30002 5.45927 5.54702 5.60689 5.63179 5.69949 5.74358 5.86729 5.98700 6.07266 6.09027 6.16508 6.23423 6.36292 6.45663 6.58726 6.75107 6.89218 7.09832 7.28708 7.54107 7.66239 7.79367 8.03136 8.32084 8.94463 9.56257 10.67126 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.003284 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.166790 B = 8524.680896 C = 8811.436474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.049 4.049 4 C -0.140 4.140 5 C -0.097 4.097 6 C -0.154 4.154 7 C 0.517 3.483 8 O -0.519 6.519 9 N -0.661 5.661 10 C 0.045 3.955 11 C -0.097 4.097 12 C -0.176 4.176 13 C 0.151 3.849 14 O -0.216 6.216 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.906 3.094 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.204 4.204 24 C -0.067 4.067 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.403 0.597 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.745 -16.401 6.635 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.168 4.168 3 C -0.052 4.052 4 C -0.198 4.198 5 C -0.135 4.135 6 C -0.211 4.211 7 C 0.304 3.696 8 O -0.393 6.393 9 N -0.307 5.307 10 C -0.047 4.047 11 C -0.117 4.117 12 C -0.196 4.196 13 C 0.098 3.902 14 O -0.121 6.121 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.183 1.183 23 C -0.224 4.224 24 C -0.087 4.087 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.138 0.862 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.154 0.846 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.506 -15.546 5.995 22.761 hybrid contribution -0.272 0.180 0.717 0.788 sum 15.234 -15.366 6.712 22.655 Atomic orbital electron populations 1.24435 0.96263 1.03477 0.99076 1.22693 0.95628 0.96750 1.01705 1.19986 0.95003 0.91655 0.98592 1.21891 0.99483 1.03117 0.95260 1.21332 0.96910 0.99378 0.95889 1.21891 0.99001 0.98331 1.01871 1.20482 0.80793 0.86081 0.82273 1.90735 1.70055 1.42902 1.35644 1.43481 1.30638 1.33690 1.22877 1.17319 0.95926 0.96842 0.94631 1.20346 0.98685 0.96448 0.96204 1.19981 1.01933 1.01725 0.95963 1.19142 0.88524 0.89255 0.93243 1.83583 1.45585 1.48193 1.34756 1.20769 1.23131 1.15922 0.86572 0.87645 1.24471 0.95493 0.96562 0.97516 1.69655 1.28551 1.30835 1.22640 0.86171 0.77555 0.80447 0.82662 1.19906 1.20795 1.18329 1.21211 1.01380 1.00576 0.99219 1.20756 0.94463 0.97147 0.96383 0.87002 0.87942 0.86179 0.92115 0.90873 0.91689 0.91045 0.90954 0.92500 0.92384 0.92493 0.76190 0.86591 0.86063 0.91044 0.84573 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 13.29 29.01 0.39 -1.52 16 2 C -0.15 -1.30 8.02 -36.03 -0.29 -1.59 16 3 C -0.05 -0.49 0.63 -156.81 -0.10 -0.59 16 4 C -0.14 -1.07 8.00 37.16 0.30 -0.77 16 5 C -0.10 -0.98 4.27 -26.73 -0.11 -1.09 16 6 C -0.15 -1.10 9.30 37.16 0.35 -0.76 16 7 C 0.52 7.27 5.07 -10.99 -0.06 7.22 16 8 O -0.52 -9.55 13.69 5.55 0.08 -9.48 16 9 N -0.66 -8.80 3.42 -9.82 -0.03 -8.83 16 10 C 0.05 0.77 6.28 -83.63 -0.52 0.25 16 11 C -0.10 -1.59 9.96 -39.42 -0.39 -1.99 16 12 C -0.18 -3.42 9.98 -39.42 -0.39 -3.82 16 13 C 0.15 3.50 6.65 -39.09 -0.26 3.24 16 14 O -0.22 -5.72 8.58 -0.01 0.00 -5.72 16 15 C -0.39 -11.05 9.90 30.88 0.31 -10.74 16 16 H 0.11 3.08 5.52 -52.48 -0.29 2.79 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.63 13.96 55.48 0.77 -24.86 16 19 Si 0.91 21.76 28.62 -169.99 -4.86 16.89 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.26 -6.20 7.11 56.52 0.40 -5.79 16 23 C -0.20 -4.59 9.13 -39.42 -0.36 -4.95 16 24 C -0.07 -1.34 8.65 -39.41 -0.34 -1.69 16 25 H 0.11 1.36 5.19 -52.49 -0.27 1.09 16 26 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 27 H 0.12 0.81 7.00 -52.49 -0.37 0.44 16 28 H 0.06 0.41 7.45 -51.93 -0.39 0.02 16 29 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 35 H 0.06 0.37 6.62 -51.93 -0.34 0.03 16 36 H 0.40 4.05 7.68 -40.82 -0.31 3.74 16 37 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.14 3.24 5.71 -52.48 -0.30 2.94 16 41 H 0.12 2.42 6.43 -52.48 -0.34 2.08 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -31.60 333.61 -5.98 -37.58 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.37 Total: 6.51 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.59 Total: -17.13 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.74 Total: -33.68 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.60 -5.98 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116735186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.788 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds