Wall clock time and date at job start Tue Mar 31 2020 06:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33000 * 119.99848 * 2 1 4 4 C 1.50699 * 120.00000 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46976 * 94.99860 * 4 3 2 6 6 C 1.47099 * 119.99709 * 180.02562 * 3 2 1 7 7 O 1.21607 * 120.00577 * 359.97438 * 6 3 2 8 8 N 1.34783 * 119.99674 * 179.97438 * 6 3 2 9 9 C 1.46500 * 120.00093 * 179.97438 * 8 6 3 10 10 C 1.50699 * 109.47192 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96230 * 269.98024 * 10 9 8 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99825 * 10 9 8 25 25 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46733 * 299.99245 * 1 2 3 27 27 H 1.08998 * 109.47503 * 59.99494 * 1 2 3 28 28 H 1.07999 * 120.00207 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47158 * 215.00303 * 4 3 2 30 30 H 1.08997 * 109.47178 * 335.00242 * 4 3 2 31 31 H 1.09003 * 109.47282 * 60.00275 * 5 4 3 32 32 H 1.09002 * 109.46986 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47495 * 300.00290 * 5 4 3 34 34 H 0.97004 * 119.99718 * 0.02562 * 8 6 3 35 35 H 1.09002 * 109.46490 * 60.00223 * 9 8 6 36 36 H 1.08992 * 109.46880 * 300.00477 * 9 8 6 37 37 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 38 38 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 40 40 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 0.0006 5 6 1.2729 2.9611 1.4378 6 6 3.6430 1.1518 -0.0006 7 8 4.2511 0.0987 -0.0006 8 7 4.3168 2.3191 -0.0011 9 6 5.7818 2.3191 -0.0011 10 6 6.2841 3.7400 -0.0011 11 6 6.5148 4.3912 -1.1995 12 6 6.9762 5.6947 -1.2037 13 6 7.2019 6.3527 -0.0104 14 6 6.9768 5.6999 1.1942 15 8 7.2035 6.3419 2.3686 16 6 7.7603 7.5678 2.2984 17 1 7.9301 8.0296 1.3370 18 6 8.1151 8.2356 3.4607 19 7 7.9088 7.6729 4.6317 20 14 8.8873 9.9338 3.3634 21 1 7.9502 10.8656 2.6861 22 1 9.1719 10.4274 4.7347 23 1 10.1540 9.8582 2.5922 24 6 6.5139 4.3902 1.1951 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 2.0470 -0.9353 -0.0004 29 1 1.9655 3.1925 -0.5889 30 1 0.4300 2.3059 -0.4333 31 1 2.2613 3.1121 1.8718 32 1 0.7282 3.9053 1.4382 33 1 0.7258 2.2253 2.0273 34 1 3.8318 3.1591 -0.0007 35 1 6.1451 1.8049 -0.8909 36 1 6.1451 1.8057 0.8890 37 1 6.3341 3.8805 -2.1338 38 1 7.1557 6.2003 -2.1409 39 1 7.5574 7.3725 -0.0144 40 1 8.1573 8.1400 5.4447 41 1 6.3343 3.8810 2.1304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116757435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:25 Heat of formation + Delta-G solvation = -40.044023 kcal Electronic energy + Delta-G solvation = -21990.280107 eV Core-core repulsion = 18642.699186 eV Total energy + Delta-G solvation = -3347.580921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94371 -39.05834 -36.89996 -36.17710 -34.56321 -32.35350 -31.60897 -30.68701 -29.18666 -28.02058 -25.87696 -25.06678 -23.40286 -21.80292 -21.53941 -20.79673 -18.81572 -17.69598 -17.25758 -16.81753 -16.08829 -15.40692 -15.04146 -14.69148 -14.47485 -14.33422 -14.10331 -13.89819 -13.63406 -13.43202 -13.34842 -12.76846 -12.63153 -12.47685 -12.41685 -12.27049 -12.11733 -11.68627 -11.39680 -11.22931 -11.05571 -10.93221 -10.83527 -10.72003 -10.50507 -9.85881 -9.42751 -9.25706 -8.90997 -8.88829 -8.25605 -7.34294 -6.50147 -4.09847 1.28644 1.89760 2.25743 3.09330 3.10632 3.13733 3.29747 3.44685 3.91626 4.47301 4.61445 4.68759 4.88472 4.93324 4.98088 5.05811 5.15654 5.26019 5.29602 5.36903 5.48226 5.52989 5.61854 5.74039 5.75249 5.82080 5.84434 5.94258 6.06183 6.09019 6.23882 6.29176 6.38481 6.52150 6.54941 6.80498 6.98002 7.17713 7.25867 7.34194 7.61849 7.70721 7.93800 8.29543 8.95034 9.63563 10.67524 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.003158 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.212794 B = 8865.294826 C = 9424.124250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.183 4.183 4 C -0.090 4.090 5 C -0.151 4.151 6 C 0.551 3.449 7 O -0.552 6.552 8 N -0.715 5.715 9 C 0.167 3.833 10 C -0.073 4.073 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.226 4.226 14 C 0.151 3.849 15 O -0.176 6.176 16 C -0.394 4.394 17 H 0.092 0.908 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.171 4.171 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 -8.192 -9.539 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.097 4.097 3 C -0.186 4.186 4 C -0.128 4.128 5 C -0.209 4.209 6 C 0.340 3.660 7 O -0.432 6.432 8 N -0.366 5.366 9 C 0.044 3.956 10 C -0.074 4.074 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.246 4.246 14 C 0.097 3.903 15 O -0.079 6.079 16 C -0.470 4.470 17 H 0.109 0.891 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.191 4.191 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.938 -8.922 -9.027 17.425 hybrid contribution 0.339 1.382 -0.088 1.426 sum -11.599 -7.540 -9.115 16.567 Atomic orbital electron populations 1.20989 0.92242 1.02856 1.02617 1.23536 0.96142 0.97872 0.92140 1.21478 0.92724 0.96569 1.07780 1.20593 1.00126 0.93793 0.98255 1.21761 1.02649 1.00966 0.95475 1.18397 0.87688 0.83681 0.76282 1.90765 1.70155 1.31333 1.50924 1.46088 1.07397 1.08702 1.74454 1.20164 0.79065 0.93813 1.02556 1.19273 1.00800 0.94168 0.93114 1.20482 1.08811 0.95901 0.96304 1.20743 0.97424 0.94307 0.96923 1.21239 1.09535 1.01698 0.92090 1.19316 0.92982 0.91350 0.86653 1.83981 1.69018 1.30222 1.24692 1.21276 1.40319 0.90722 0.94703 0.89091 1.25291 0.96988 0.99966 0.94172 1.70023 1.43983 1.38038 0.97515 0.85782 0.79457 0.80246 0.77966 1.19475 1.20232 1.19464 1.20086 1.08245 0.93283 0.97468 0.91540 0.90727 0.90736 0.85671 0.91068 0.90426 0.92113 0.91984 0.92537 0.76077 0.90913 0.90825 0.87510 0.87274 0.85460 0.91882 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 8.84 36.01 0.32 -0.55 16 2 C -0.08 -0.76 9.84 -36.12 -0.36 -1.12 16 3 C -0.18 -2.04 5.25 -102.85 -0.54 -2.58 16 4 C -0.09 -0.81 5.16 -27.88 -0.14 -0.95 16 5 C -0.15 -1.39 9.89 37.16 0.37 -1.03 16 6 C 0.55 8.00 7.75 -12.66 -0.10 7.90 16 7 O -0.55 -9.85 16.22 5.27 0.09 -9.76 16 8 N -0.72 -9.90 5.50 -62.68 -0.34 -10.25 16 9 C 0.17 2.53 5.80 -5.19 -0.03 2.50 16 10 C -0.07 -1.24 5.25 -104.65 -0.55 -1.79 16 11 C -0.20 -3.21 9.70 -39.53 -0.38 -3.59 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.23 -4.71 9.17 -39.40 -0.36 -5.07 16 14 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 15 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 16 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 17 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 20 Si 0.94 20.11 29.55 -169.99 -5.02 15.08 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.17 -3.47 9.65 -39.39 -0.38 -3.85 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.46 7.82 -51.93 -0.41 0.05 16 27 H 0.07 0.43 7.42 -51.93 -0.39 0.04 16 28 H 0.13 1.36 7.49 -52.49 -0.39 0.97 16 29 H 0.07 0.63 6.96 -51.93 -0.36 0.27 16 30 H 0.08 0.56 6.32 -51.93 -0.33 0.23 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.48 7.86 -51.93 -0.41 0.08 16 34 H 0.40 5.07 6.68 -40.82 -0.27 4.80 16 35 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 36 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 41 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -31.43 348.44 -7.52 -38.96 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.64 Total: 7.79 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.62 Total: -18.06 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.41 Total: -34.37 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.43 -7.52 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116757435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.088 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds