Wall clock time and date at job start Tue Mar 31 2020 07:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46771 * 179.97438 * 4 3 2 6 6 C 1.36907 * 120.00095 * 289.62933 * 5 4 3 7 7 H 1.07996 * 120.00084 * 41.70260 * 6 5 4 8 8 C 1.39028 * 119.99764 * 221.70151 * 6 5 4 9 9 N 1.31382 * 119.99944 * 23.00502 * 8 6 5 10 10 Si 1.86802 * 119.99849 * 203.00462 * 8 6 5 11 11 H 1.48497 * 109.47024 * 89.99932 * 10 8 6 12 12 H 1.48507 * 109.46836 * 209.99955 * 10 8 6 13 13 H 1.48493 * 109.47087 * 329.99916 * 10 8 6 14 14 C 1.34780 * 119.99840 * 109.62726 * 5 4 3 15 15 O 1.21627 * 119.99851 * 186.87608 * 14 5 4 16 16 C 1.47426 * 120.00227 * 6.88350 * 14 5 4 17 17 C 1.39595 * 120.05533 * 324.49501 * 16 14 5 18 18 C 1.37772 * 120.17658 * 179.97438 * 17 16 14 19 19 C 1.38660 * 119.98109 * 0.21861 * 18 17 16 20 20 C 1.37682 * 120.33252 * 359.97438 * 19 18 17 21 21 C 1.38854 * 120.87250 * 359.59512 * 20 19 18 22 22 O 1.35863 * 111.30372 * 181.06159 * 21 20 19 23 23 C 1.43785 * 109.23204 * 340.65250 * 22 21 20 24 24 C 1.51673 * 132.12982 * 179.09810 * 20 19 18 25 25 H 1.08998 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47180 * 300.00103 * 1 2 3 27 27 H 1.09004 * 109.47090 * 60.00196 * 1 2 3 28 28 H 1.08991 * 109.47073 * 240.00042 * 2 1 3 29 29 H 1.08996 * 109.46846 * 119.99966 * 2 1 3 30 30 H 1.09001 * 109.47151 * 59.99879 * 3 2 1 31 31 H 1.09004 * 109.46951 * 299.99889 * 3 2 1 32 32 H 1.08991 * 109.47079 * 60.00214 * 4 3 2 33 33 H 1.08996 * 109.47127 * 299.99962 * 4 3 2 34 34 H 0.96998 * 119.99997 * 184.95928 * 9 8 6 35 35 H 1.08003 * 119.91032 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.01005 * 180.23726 * 18 17 16 37 37 H 1.07993 * 119.83111 * 179.97438 * 19 18 17 38 38 H 1.09004 * 110.75005 * 269.55429 * 23 22 21 39 39 H 1.08997 * 110.91579 * 146.26487 * 23 22 21 40 40 H 1.09005 * 110.93986 * 313.71773 * 24 20 19 41 41 H 1.09002 * 110.94355 * 77.37036 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 3.9115 3.6011 -1.1172 7 1 2.9889 3.5720 -1.6779 8 6 4.9500 4.4282 -1.5300 9 7 6.1848 4.1625 -1.1682 10 14 4.5897 5.9171 -2.5989 11 1 4.3265 7.0953 -1.7342 12 1 5.7591 6.1947 -3.4713 13 1 3.3974 5.6450 -3.4411 14 6 4.6521 3.3289 1.0994 15 8 4.9446 4.5087 1.1448 16 6 4.9474 2.4517 2.2469 17 6 4.0710 1.4174 2.5799 18 6 4.3447 0.5958 3.6515 19 6 5.4911 0.7983 4.4048 20 6 6.3604 1.8178 4.0877 21 6 6.1133 2.6549 3.0078 22 8 7.1030 3.5736 2.8588 23 6 7.8346 3.6858 4.0915 24 6 7.6556 2.2852 4.7236 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9287 0.8908 34 1 6.8996 4.7776 -1.3950 35 1 3.1760 1.2609 1.9961 36 1 3.6668 -0.2059 3.9044 37 1 5.7030 0.1531 5.2445 38 1 7.4008 4.4558 4.7294 39 1 8.8879 3.8921 3.9014 40 1 7.5544 2.3566 5.8066 41 1 8.4817 1.6270 4.4541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149181549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:55 Heat of formation + Delta-G solvation = -14.489187 kcal Electronic energy + Delta-G solvation = -23783.317412 eV Core-core repulsion = 20436.844631 eV Total energy + Delta-G solvation = -3346.472780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75598 -38.62420 -36.61444 -35.47210 -33.38632 -32.50699 -31.51468 -29.67795 -29.02109 -28.11564 -25.06527 -23.64303 -22.78689 -22.05827 -21.44501 -20.56888 -19.40080 -17.10855 -16.78006 -16.10808 -15.93380 -15.40875 -15.13020 -14.79800 -14.32279 -13.98109 -13.76696 -13.31273 -13.10064 -12.89933 -12.81445 -12.57497 -12.30652 -11.98053 -11.79027 -11.46112 -11.36529 -11.28843 -11.07988 -10.87406 -10.73832 -10.70607 -10.59244 -10.43795 -10.37162 -10.09987 -9.79797 -8.63242 -8.35357 -7.97632 -7.68152 -7.08532 -6.06362 -3.76855 1.49656 1.72453 3.37884 3.45144 3.49069 3.66955 3.91134 4.32002 4.60329 4.67860 4.83360 4.93737 5.14487 5.23653 5.26540 5.30011 5.38040 5.45680 5.48049 5.56993 5.65496 5.68828 5.79722 5.87448 5.93147 5.97365 6.05212 6.15211 6.16353 6.24335 6.36944 6.39061 6.49560 6.64119 6.71540 6.77115 6.78820 6.95630 7.01734 7.63967 7.69670 8.32607 9.11019 9.27105 9.70881 10.36651 11.00859 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.007964 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.091898 B = 3515.054838 C = 5780.106030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.134 4.134 4 C 0.069 3.931 5 N -0.442 5.442 6 C -0.346 4.346 7 H 0.080 0.920 8 C 0.075 3.925 9 N -0.826 5.826 10 Si 0.905 3.095 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.516 3.484 15 O -0.534 6.534 16 C -0.118 4.118 17 C -0.086 4.086 18 C -0.164 4.164 19 C -0.069 4.069 20 C -0.194 4.194 21 C 0.157 3.843 22 O -0.273 6.273 23 C 0.046 3.954 24 C -0.105 4.105 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.265 0.735 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -9.507 10.194 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.173 4.173 4 C -0.054 4.054 5 N -0.163 5.163 6 C -0.472 4.472 7 H 0.098 0.902 8 C -0.136 4.136 9 N -0.459 5.459 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.198 1.198 14 C 0.304 3.696 15 O -0.413 6.413 16 C -0.123 4.123 17 C -0.104 4.104 18 C -0.182 4.182 19 C -0.088 4.088 20 C -0.195 4.195 21 C 0.109 3.891 22 O -0.185 6.185 23 C -0.030 4.030 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.910 -8.707 9.916 13.334 hybrid contribution 0.096 0.590 -0.372 0.704 sum -1.815 -8.117 9.544 12.659 Atomic orbital electron populations 1.21762 0.96316 1.00888 1.01786 1.21505 0.95429 0.97442 1.01758 1.21972 0.96976 0.95653 1.02668 1.22415 0.93179 0.87288 1.02534 1.43106 1.53838 1.08584 1.10753 1.18915 0.99330 1.24168 1.04785 0.90200 1.25186 0.93904 0.98687 0.95858 1.69902 0.99257 1.33691 1.43033 0.86335 0.77602 0.83615 0.79326 1.20283 1.21437 1.19836 1.17604 0.83467 0.87044 0.81468 1.90613 1.53703 1.16238 1.80731 1.19881 0.92984 0.99360 1.00025 1.21728 0.99893 0.92945 0.95838 1.20877 0.98514 1.01779 0.97027 1.20226 0.93438 0.96004 0.99130 1.20729 0.98548 0.99863 1.00395 1.19481 0.88089 0.88170 0.93316 1.87064 1.41007 1.57466 1.32983 1.23827 0.97631 0.96653 0.84877 1.21746 0.95212 0.96503 1.00769 0.93284 0.92937 0.92822 0.92008 0.92330 0.92318 0.91107 0.92458 0.89392 0.92456 0.82877 0.85667 0.86327 0.90880 0.87976 0.89553 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.59 5.93 -26.73 -0.16 -1.75 16 3 C -0.13 -2.25 4.58 -26.73 -0.12 -2.37 16 4 C 0.07 1.41 4.91 -4.04 -0.02 1.39 16 5 N -0.44 -11.57 2.60 -116.03 -0.30 -11.87 16 6 C -0.35 -9.81 8.90 -14.99 -0.13 -9.94 16 7 H 0.08 2.16 7.36 -52.49 -0.39 1.78 16 8 C 0.07 2.19 4.23 -17.45 -0.07 2.12 16 9 N -0.83 -25.58 12.09 55.50 0.67 -24.91 16 10 Si 0.90 22.70 29.62 -169.99 -5.03 17.67 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.52 14.21 6.54 -12.52 -0.08 14.13 16 15 O -0.53 -16.97 14.66 3.85 0.06 -16.91 16 16 C -0.12 -2.69 5.53 -104.72 -0.58 -3.27 16 17 C -0.09 -1.53 7.40 -39.25 -0.29 -1.82 16 18 C -0.16 -2.37 10.05 -39.60 -0.40 -2.77 16 19 C -0.07 -0.99 10.02 -39.63 -0.40 -1.39 16 20 C -0.19 -3.24 6.27 -104.12 -0.65 -3.89 16 21 C 0.16 3.38 6.69 -38.43 -0.26 3.13 16 22 O -0.27 -6.13 10.70 -20.72 -0.22 -6.35 16 23 C 0.05 0.69 8.01 38.06 0.30 0.99 16 24 C -0.11 -1.37 7.12 -26.51 -0.19 -1.56 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.99 7.48 -51.93 -0.39 0.60 16 31 H 0.07 1.29 7.47 -51.93 -0.39 0.90 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.64 3.44 -56.89 -0.20 1.44 16 34 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 35 H 0.15 2.53 3.95 -52.48 -0.21 2.32 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -36.30 332.63 -8.27 -44.57 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.77 Total: 1.12 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.68 Total: -8.34 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.37 Total: -36.77 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.17 Total: -23.26 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.30 -8.27 -44.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149181549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.083 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds