Wall clock time and date at job start Tue Mar 31 2020 07:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47175 * 2 1 4 4 C 1.52998 * 109.46887 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46771 * 179.97438 * 4 3 2 6 6 C 1.36907 * 120.00095 * 289.62933 * 5 4 3 7 7 H 1.07996 * 120.00084 * 41.70260 * 6 5 4 8 8 C 1.39028 * 119.99764 * 221.70151 * 6 5 4 9 9 N 1.31382 * 119.99944 * 23.00502 * 8 6 5 10 10 Si 1.86802 * 119.99849 * 203.00462 * 8 6 5 11 11 H 1.48497 * 109.47024 * 89.99932 * 10 8 6 12 12 H 1.48507 * 109.46836 * 209.99955 * 10 8 6 13 13 H 1.48493 * 109.47087 * 329.99916 * 10 8 6 14 14 C 1.34780 * 119.99840 * 109.62726 * 5 4 3 15 15 O 1.21627 * 119.99851 * 186.87608 * 14 5 4 16 16 C 1.47426 * 120.00227 * 6.88350 * 14 5 4 17 17 C 1.39595 * 120.05533 * 324.49501 * 16 14 5 18 18 C 1.37772 * 120.17658 * 179.97438 * 17 16 14 19 19 C 1.38660 * 119.98109 * 0.21861 * 18 17 16 20 20 C 1.37682 * 120.33252 * 359.97438 * 19 18 17 21 21 C 1.38854 * 120.87250 * 359.59512 * 20 19 18 22 22 O 1.35863 * 111.30372 * 181.06159 * 21 20 19 23 23 C 1.43785 * 109.23204 * 340.65250 * 22 21 20 24 24 C 1.51673 * 132.12982 * 179.09810 * 20 19 18 25 25 H 1.08998 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47180 * 300.00103 * 1 2 3 27 27 H 1.09004 * 109.47090 * 60.00196 * 1 2 3 28 28 H 1.08991 * 109.47073 * 240.00042 * 2 1 3 29 29 H 1.08996 * 109.46846 * 119.99966 * 2 1 3 30 30 H 1.09001 * 109.47151 * 59.99879 * 3 2 1 31 31 H 1.09004 * 109.46951 * 299.99889 * 3 2 1 32 32 H 1.08991 * 109.47079 * 60.00214 * 4 3 2 33 33 H 1.08996 * 109.47127 * 299.99962 * 4 3 2 34 34 H 0.96998 * 119.99997 * 184.95928 * 9 8 6 35 35 H 1.08003 * 119.91032 * 359.97438 * 17 16 14 36 36 H 1.08000 * 120.01005 * 180.23726 * 18 17 16 37 37 H 1.07993 * 119.83111 * 179.97438 * 19 18 17 38 38 H 1.09004 * 110.75005 * 269.55429 * 23 22 21 39 39 H 1.08997 * 110.91579 * 146.26487 * 23 22 21 40 40 H 1.09005 * 110.93986 * 313.71773 * 24 20 19 41 41 H 1.09002 * 110.94355 * 77.37036 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 3.9115 3.6011 -1.1172 7 1 2.9889 3.5720 -1.6779 8 6 4.9500 4.4282 -1.5300 9 7 6.1848 4.1625 -1.1682 10 14 4.5897 5.9171 -2.5989 11 1 4.3265 7.0953 -1.7342 12 1 5.7591 6.1947 -3.4713 13 1 3.3974 5.6450 -3.4411 14 6 4.6521 3.3289 1.0994 15 8 4.9446 4.5087 1.1448 16 6 4.9474 2.4517 2.2469 17 6 4.0710 1.4174 2.5799 18 6 4.3447 0.5958 3.6515 19 6 5.4911 0.7983 4.4048 20 6 6.3604 1.8178 4.0877 21 6 6.1133 2.6549 3.0078 22 8 7.1030 3.5736 2.8588 23 6 7.8346 3.6858 4.0915 24 6 7.6556 2.2852 4.7236 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9287 0.8908 34 1 6.8996 4.7776 -1.3950 35 1 3.1760 1.2609 1.9961 36 1 3.6668 -0.2059 3.9044 37 1 5.7030 0.1531 5.2445 38 1 7.4008 4.4558 4.7294 39 1 8.8879 3.8921 3.9014 40 1 7.5544 2.3566 5.8066 41 1 8.4817 1.6270 4.4541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149181549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:55 Heat of formation + Delta-G solvation = -38.647453 kcal Electronic energy + Delta-G solvation = -23784.364993 eV Core-core repulsion = 20436.844631 eV Total energy + Delta-G solvation = -3347.520361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13562 -40.39300 -38.11210 -37.08970 -35.16449 -34.02121 -33.22364 -31.08638 -30.37282 -29.51169 -27.05547 -25.02257 -24.09422 -23.57530 -22.72923 -21.84781 -21.18751 -18.66571 -18.45199 -17.75572 -17.34486 -16.91600 -16.69782 -16.44236 -15.84670 -15.72387 -15.32375 -14.72184 -14.43205 -14.31669 -14.16101 -13.88383 -13.66389 -13.46845 -13.28847 -13.11361 -12.86684 -12.75701 -12.62450 -12.53765 -12.23077 -12.13562 -12.10659 -11.90657 -11.73662 -11.51933 -11.24407 -10.76893 -10.16847 -9.62565 -9.22611 -9.02466 -8.26587 -6.01095 0.12850 0.39709 1.31157 1.41455 1.45559 2.21859 2.36000 2.51554 2.83500 3.19398 3.26918 3.49800 3.70511 3.95833 4.06986 4.08739 4.15013 4.23937 4.32552 4.39941 4.41921 4.51588 4.54330 4.67727 4.74135 4.85000 4.89284 4.90843 5.01143 5.04715 5.10045 5.20120 5.33914 5.39240 5.41398 5.44275 5.48384 5.49345 5.60489 5.80766 6.13943 6.31795 6.97367 7.20158 7.62215 8.31055 8.80235 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.007964 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.091898 B = 3515.054838 C = 5780.106030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.068 3.932 5 N -0.459 5.459 6 C -0.361 4.361 7 H 0.085 0.915 8 C 0.020 3.980 9 N -0.869 5.869 10 Si 0.966 3.034 11 H -0.293 1.293 12 H -0.280 1.280 13 H -0.247 1.247 14 C 0.505 3.495 15 O -0.598 6.598 16 C -0.169 4.169 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.052 4.052 20 C -0.190 4.190 21 C 0.114 3.886 22 O -0.332 6.332 23 C 0.031 3.969 24 C -0.091 4.091 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.111 0.889 34 H 0.258 0.742 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.419 -12.863 12.835 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.161 4.161 4 C -0.055 4.055 5 N -0.179 5.179 6 C -0.488 4.488 7 H 0.103 0.897 8 C -0.186 4.186 9 N -0.504 5.504 10 Si 0.790 3.210 11 H -0.220 1.220 12 H -0.206 1.206 13 H -0.171 1.171 14 C 0.295 3.705 15 O -0.481 6.481 16 C -0.173 4.173 17 C -0.108 4.108 18 C -0.162 4.162 19 C -0.070 4.070 20 C -0.191 4.191 21 C 0.067 3.933 22 O -0.246 6.246 23 C -0.043 4.043 24 C -0.128 4.128 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.178 0.822 36 H 0.194 0.806 37 H 0.189 0.811 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.011 -12.120 12.541 17.699 hybrid contribution 0.412 1.549 -1.043 1.912 sum -2.599 -10.571 11.498 15.834 Atomic orbital electron populations 1.21744 0.94813 1.02325 1.01650 1.21472 0.96633 0.94262 1.03011 1.21854 0.94112 0.98603 1.01514 1.22665 0.95429 0.84328 1.03030 1.43391 1.53857 1.10654 1.09982 1.19262 0.99254 1.25063 1.05192 0.89725 1.26114 0.93746 1.01365 0.97408 1.70023 1.00090 1.34549 1.45759 0.85383 0.78580 0.79262 0.77746 1.22043 1.20583 1.17052 1.18501 0.81940 0.87156 0.82874 1.90529 1.56000 1.19149 1.82462 1.19803 0.95994 1.01610 0.99886 1.21826 0.99187 0.92344 0.97446 1.21452 0.98979 1.01171 0.94594 1.20890 0.91839 0.94769 0.99523 1.21255 1.00088 0.99191 0.98553 1.19937 0.88257 0.89794 0.95281 1.86978 1.42178 1.58639 1.36780 1.24213 0.98033 0.98844 0.83215 1.21817 0.93867 0.94604 1.02500 0.91011 0.92561 0.93601 0.91808 0.90041 0.92507 0.93261 0.93617 0.87198 0.93273 0.82189 0.80583 0.81058 0.90400 0.86087 0.85600 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.91 71.98 0.71 -2.23 16 2 C -0.12 -2.71 5.93 30.60 0.18 -2.53 16 3 C -0.12 -4.08 4.58 30.59 0.14 -3.94 16 4 C 0.07 2.81 4.91 86.38 0.42 3.23 16 5 N -0.46 -25.31 2.60 -639.26 -1.66 -26.97 16 6 C -0.36 -21.56 8.90 84.09 0.75 -20.81 16 7 H 0.09 4.79 7.36 -2.91 -0.02 4.77 16 8 C 0.02 1.23 4.23 84.95 0.36 1.59 16 9 N -0.87 -57.50 12.09 21.68 0.26 -57.24 16 10 Si 0.97 49.02 29.62 68.60 2.03 51.05 16 11 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 13 H -0.25 -11.33 7.11 99.48 0.71 -10.63 16 14 C 0.50 29.60 6.54 86.66 0.57 30.16 16 15 O -0.60 -41.06 14.66 -2.77 -0.04 -41.10 16 16 C -0.17 -7.92 5.53 -19.93 -0.11 -8.03 16 17 C -0.09 -3.07 7.40 22.49 0.17 -2.90 16 18 C -0.14 -3.45 10.05 22.26 0.22 -3.23 16 19 C -0.05 -1.21 10.02 22.24 0.22 -0.98 16 20 C -0.19 -5.81 6.27 -19.54 -0.12 -5.93 16 21 C 0.11 5.03 6.69 23.02 0.15 5.19 16 22 O -0.33 -15.76 10.70 -90.67 -0.97 -16.73 16 23 C 0.03 0.94 8.01 72.56 0.58 1.52 16 24 C -0.09 -2.08 7.12 30.74 0.22 -1.86 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.90 7.48 -2.39 -0.02 1.88 16 31 H 0.05 1.83 7.47 -2.38 -0.02 1.81 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.11 4.06 3.44 -7.04 -0.02 4.04 16 34 H 0.26 16.55 8.31 -92.71 -0.77 15.78 16 35 H 0.16 5.03 3.95 -2.91 -0.01 5.02 16 36 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -90.21 332.63 5.10 -85.10 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.02 Total: 16.64 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.47 Total: -10.76 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.40 Total: -84.21 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -1.01 Total: -57.84 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -90.21 5.10 -85.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149181549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.457 kcal (2) G-P(sol) polarization free energy of solvation -90.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds