Wall clock time and date at job start Tue Mar 31 2020 07:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47041 * 2 1 4 4 C 1.52999 * 109.47083 * 184.78423 * 3 2 1 5 5 N 1.46507 * 109.47211 * 184.85378 * 4 3 2 6 6 C 1.36866 * 119.99881 * 95.88910 * 5 4 3 7 7 H 1.08006 * 119.99758 * 218.72436 * 6 5 4 8 8 C 1.39048 * 120.00153 * 39.00457 * 6 5 4 9 9 N 1.31366 * 120.00050 * 210.27538 * 8 6 5 10 10 Si 1.86803 * 119.99985 * 30.27877 * 8 6 5 11 11 H 1.48500 * 109.46995 * 85.34384 * 10 8 6 12 12 H 1.48500 * 109.46837 * 205.34044 * 10 8 6 13 13 H 1.48493 * 109.47177 * 325.33942 * 10 8 6 14 14 C 1.34775 * 119.99560 * 275.88712 * 5 4 3 15 15 O 1.21590 * 120.00103 * 5.75315 * 14 5 4 16 16 C 1.47739 * 119.99689 * 185.74632 * 14 5 4 17 17 C 1.39668 * 119.98984 * 27.73019 * 16 14 5 18 18 C 1.38029 * 119.62400 * 179.90345 * 17 16 14 19 19 C 1.37927 * 120.17821 * 0.50893 * 18 17 16 20 20 C 1.39034 * 121.02704 * 359.46125 * 19 18 17 21 21 C 1.39010 * 119.03439 * 0.41608 * 20 19 18 22 22 O 1.36175 * 111.20876 * 180.95024 * 20 19 18 23 23 C 1.43761 * 109.24019 * 340.91697 * 22 20 19 24 24 C 1.51705 * 131.98156 * 179.27145 * 19 18 17 25 25 H 1.09000 * 109.47357 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47222 * 300.00308 * 1 2 3 27 27 H 1.08997 * 109.46835 * 60.00342 * 1 2 3 28 28 H 1.08994 * 109.47541 * 239.99608 * 2 1 3 29 29 H 1.09005 * 109.46678 * 120.00004 * 2 1 3 30 30 H 1.09002 * 109.47499 * 64.78507 * 3 2 1 31 31 H 1.08998 * 109.47337 * 304.78085 * 3 2 1 32 32 H 1.09000 * 109.47086 * 64.84866 * 4 3 2 33 33 H 1.08997 * 109.47063 * 304.85041 * 4 3 2 34 34 H 0.96996 * 119.99843 * 179.97438 * 9 8 6 35 35 H 1.08005 * 120.18903 * 0.13796 * 17 16 14 36 36 H 1.07998 * 119.91165 * 180.25632 * 18 17 16 37 37 H 1.08003 * 119.94649 * 179.74656 * 21 20 19 38 38 H 1.08994 * 110.74269 * 269.49974 * 23 22 20 39 39 H 1.09000 * 110.74669 * 146.15137 * 23 22 20 40 40 H 1.09002 * 110.93057 * 313.73812 * 24 19 18 41 41 H 1.08996 * 110.93611 * 77.37392 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5652 1.4441 -0.1203 5 7 4.0628 2.8172 -0.0040 6 6 4.5015 3.2860 1.2048 7 1 4.2848 4.3018 1.5008 8 6 5.2310 2.4563 2.0490 9 7 5.1549 2.6135 3.3510 10 14 6.3195 1.1183 1.3318 11 1 7.6473 1.6898 0.9915 12 1 6.4894 0.0310 2.3289 13 1 5.6872 0.5705 0.1050 14 6 4.0885 3.6186 -1.0873 15 8 3.6033 3.2394 -2.1357 16 6 4.7062 4.9579 -1.0008 17 6 5.7291 5.1968 -0.0803 18 6 6.3023 6.4503 -0.0073 19 6 5.8600 7.4640 -0.8315 20 6 4.8433 7.2452 -1.7543 21 6 4.2642 5.9840 -1.8338 22 8 4.5807 8.3709 -2.4741 23 6 5.0987 9.5136 -1.7722 24 6 6.2768 8.9163 -0.9672 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.7484 1.9310 0.9297 31 1 1.6084 1.9804 -0.8440 32 1 3.8538 1.0338 -1.0880 33 1 3.9931 0.8341 0.6752 34 1 5.6635 2.0345 3.9400 35 1 6.0724 4.4041 0.5681 36 1 7.0964 6.6391 0.6999 37 1 3.4706 5.7988 -2.5425 38 1 4.3455 9.9297 -1.1032 39 1 5.4538 10.2690 -2.4732 40 1 6.3605 9.3904 0.0108 41 1 7.2115 9.0031 -1.5211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153360208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:52 Heat of formation + Delta-G solvation = -36.377524 kcal Electronic energy + Delta-G solvation = -23175.880740 eV Core-core repulsion = 19828.458810 eV Total energy + Delta-G solvation = -3347.421930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72253 -39.11151 -36.57058 -35.46524 -34.11039 -32.33597 -32.03762 -29.80146 -29.31961 -28.09427 -25.11715 -24.14221 -22.73236 -21.90328 -21.39638 -20.68662 -19.30187 -17.80631 -16.61287 -16.34145 -16.11649 -15.53408 -15.13200 -14.66320 -14.54358 -14.07988 -13.89063 -13.42728 -13.16537 -13.09573 -12.83957 -12.74649 -12.61903 -12.29982 -12.04072 -11.96735 -11.65617 -11.40271 -11.24802 -11.03946 -10.76111 -10.62118 -10.54561 -10.50135 -10.20363 -10.00814 -9.74853 -9.22456 -8.67957 -8.36610 -7.85087 -7.63856 -6.66691 -4.12959 1.47653 1.93911 3.02704 3.14852 3.22274 3.48097 3.62976 4.03820 4.33103 4.39850 4.60975 4.79423 4.87343 5.05868 5.24177 5.39043 5.41011 5.48364 5.55685 5.60771 5.75836 5.81481 5.90703 5.98109 6.06817 6.09980 6.15156 6.20195 6.26753 6.30214 6.44377 6.47534 6.53909 6.75530 6.83988 6.93818 6.97410 7.06699 7.17581 7.26099 7.62248 7.94538 8.18048 8.82850 9.25160 9.60828 10.41730 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.005354 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.320300 B = 5228.897696 C = 6361.796156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.115 3.885 5 N -0.448 5.448 6 C -0.353 4.353 7 H 0.108 0.892 8 C 0.075 3.925 9 N -0.835 5.835 10 Si 0.848 3.152 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.250 1.250 14 C 0.511 3.489 15 O -0.592 6.592 16 C -0.067 4.067 17 C -0.088 4.088 18 C -0.093 4.093 19 C -0.169 4.169 20 C 0.077 3.923 21 C -0.094 4.094 22 O -0.310 6.310 23 C 0.052 3.948 24 C -0.109 4.109 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.277 0.723 35 H 0.169 0.831 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 5.631 -3.519 6.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.168 4.168 4 C -0.008 4.008 5 N -0.167 5.167 6 C -0.480 4.480 7 H 0.125 0.875 8 C -0.135 4.135 9 N -0.468 5.468 10 Si 0.672 3.328 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.174 1.174 14 C 0.302 3.698 15 O -0.478 6.478 16 C -0.070 4.070 17 C -0.106 4.106 18 C -0.111 4.111 19 C -0.170 4.170 20 C 0.032 3.968 21 C -0.114 4.114 22 O -0.224 6.224 23 C -0.023 4.023 24 C -0.146 4.146 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.186 0.814 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.370 5.380 -3.989 6.708 hybrid contribution 0.785 -0.472 0.160 0.930 sum 1.155 4.909 -3.828 6.331 Atomic orbital electron populations 1.21743 0.96265 1.00810 1.01735 1.21465 0.95509 0.97494 1.01516 1.21897 0.96302 0.95981 1.02635 1.21759 0.93549 0.84616 1.00858 1.43559 1.54259 1.10988 1.07858 1.19058 1.35289 1.01792 0.91837 0.87495 1.25343 0.96563 0.97098 0.94502 1.69881 1.36181 1.38088 1.02614 0.87489 0.82455 0.82112 0.80759 1.19707 1.20613 1.17401 1.18186 0.82579 0.85796 0.83261 1.90636 1.51142 1.76308 1.29752 1.19640 0.97476 0.93614 0.96272 1.22302 0.94477 0.97371 0.96487 1.20330 1.00093 0.92182 0.98492 1.20845 0.99159 0.96223 1.00769 1.19254 0.95653 0.88459 0.93389 1.20209 1.00934 0.89156 1.01097 1.86799 1.78003 1.13750 1.43892 1.23736 0.94885 0.88204 0.95489 1.21761 0.99011 0.92317 1.01470 0.93334 0.92830 0.92921 0.92398 0.92245 0.91330 0.91819 0.91921 0.91172 0.91224 0.81428 0.86013 0.85310 0.90948 0.88175 0.89411 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.93 5.93 -26.73 -0.16 -2.08 16 3 C -0.13 -2.51 5.49 -26.73 -0.15 -2.66 16 4 C 0.12 2.50 3.40 -4.04 -0.01 2.49 16 5 N -0.45 -10.58 2.12 -115.92 -0.25 -10.83 16 6 C -0.35 -8.64 6.31 -15.00 -0.09 -8.73 16 7 H 0.11 2.79 6.79 -52.48 -0.36 2.43 16 8 C 0.08 1.83 4.90 -17.45 -0.09 1.75 16 9 N -0.84 -21.36 13.95 55.50 0.77 -20.58 16 10 Si 0.85 18.59 26.51 -169.99 -4.51 14.09 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.25 -5.40 5.39 56.52 0.30 -5.10 16 14 C 0.51 12.26 7.37 -12.38 -0.09 12.17 16 15 O -0.59 -15.21 16.27 5.29 0.09 -15.12 16 16 C -0.07 -1.46 5.51 -105.06 -0.58 -2.04 16 17 C -0.09 -1.79 7.88 -39.12 -0.31 -2.10 16 18 C -0.09 -1.61 10.01 -39.77 -0.40 -2.01 16 19 C -0.17 -2.78 6.27 -103.95 -0.65 -3.43 16 20 C 0.08 1.40 7.02 -39.00 -0.27 1.12 16 21 C -0.09 -1.91 9.61 -38.88 -0.37 -2.28 16 22 O -0.31 -5.09 11.10 -20.30 -0.23 -5.31 16 23 C 0.05 0.60 8.00 38.05 0.30 0.91 16 24 C -0.11 -1.30 7.12 -26.50 -0.19 -1.48 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 32 H 0.06 1.37 7.65 -51.93 -0.40 0.97 16 33 H 0.07 1.51 4.51 -51.93 -0.23 1.28 16 34 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.17 3.64 5.35 -52.48 -0.28 3.36 16 36 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.13 2.61 7.87 -52.48 -0.41 2.20 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -28.22 332.28 -7.78 -36.00 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.98 Total: 6.79 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.69 Total: -10.04 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.53 Total: -31.41 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.14 Total: -20.44 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.51 Total: 14.09 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.22 -7.78 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153360208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.379 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds