Wall clock time and date at job start Tue Mar 31 2020 07:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46991 * 2 1 4 4 C 1.52998 * 109.46860 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47085 * 180.02562 * 4 3 2 6 6 C 1.37098 * 120.00751 * 95.46044 * 5 4 3 7 7 H 1.07997 * 120.00296 * 214.60151 * 6 5 4 8 8 C 1.38950 * 119.99533 * 34.59508 * 6 5 4 9 9 N 1.31411 * 120.00498 * 21.14575 * 8 6 5 10 10 Si 1.86806 * 119.99913 * 201.14980 * 8 6 5 11 11 H 1.48494 * 109.47351 * 89.99708 * 10 8 6 12 12 H 1.48496 * 109.46958 * 210.00027 * 10 8 6 13 13 H 1.48499 * 109.46672 * 329.99798 * 10 8 6 14 14 C 1.34779 * 119.99623 * 275.46249 * 5 4 3 15 15 O 1.21294 * 119.99729 * 359.97438 * 14 5 4 16 16 C 1.50703 * 120.00104 * 179.97438 * 14 5 4 17 17 H 1.08996 * 110.66351 * 301.78102 * 16 14 5 18 18 C 1.54701 * 110.74644 * 64.99924 * 16 14 5 19 19 C 1.51647 * 101.92629 * 143.60888 * 18 16 14 20 20 C 1.37738 * 132.17394 * 164.59157 * 19 18 16 21 21 C 1.38353 * 119.97981 * 180.36204 * 20 19 18 22 22 C 1.38291 * 119.76353 * 0.02562 * 21 20 19 23 23 C 1.37927 * 120.35313 * 359.85208 * 22 21 20 24 24 C 1.38882 * 107.03921 * 344.61263 * 19 18 16 25 25 O 1.36136 * 111.23501 * 358.93273 * 24 19 18 26 26 H 1.09000 * 109.46464 * 60.00599 * 1 2 3 27 27 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47296 * 300.00366 * 1 2 3 29 29 H 1.08993 * 109.47296 * 239.99634 * 2 1 3 30 30 H 1.09000 * 109.46464 * 119.99401 * 2 1 3 31 31 H 1.08993 * 109.47399 * 59.99697 * 3 2 1 32 32 H 1.09003 * 109.46614 * 299.99347 * 3 2 1 33 33 H 1.09003 * 109.46897 * 299.99080 * 4 3 2 34 34 H 1.08993 * 109.47438 * 59.99627 * 4 3 2 35 35 H 0.96998 * 120.00621 * 179.97438 * 9 8 6 36 36 H 1.09002 * 110.93793 * 261.76563 * 18 16 14 37 37 H 1.08997 * 110.94433 * 25.44852 * 18 16 14 38 38 H 1.07997 * 120.01218 * 0.33594 * 20 19 18 39 39 H 1.07995 * 120.12008 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.81883 * 179.82975 * 22 21 20 41 41 H 1.07997 * 119.88184 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3939 3.4318 1.1820 7 1 4.2152 4.4884 1.3155 8 6 4.9639 2.6884 2.2083 9 7 5.5587 1.5474 1.9413 10 14 4.8845 3.3108 3.9678 11 1 3.6510 2.8005 4.6183 12 1 6.0737 2.8312 4.7167 13 1 4.8657 4.7957 3.9671 14 6 4.1777 3.4967 -1.1616 15 8 3.8813 2.9586 -2.2075 16 6 4.6796 4.9177 -1.1611 17 1 4.0422 5.5504 -0.5434 18 6 6.1477 4.9803 -0.6775 19 6 6.7185 6.0813 -1.5502 20 6 7.8735 6.8265 -1.4616 21 6 8.1478 7.7924 -2.4134 22 6 7.2587 8.0058 -3.4510 23 6 6.1028 7.2590 -3.5430 24 6 5.8217 6.2812 -2.5917 25 8 4.7642 5.4285 -2.5023 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9562 -0.8901 33 1 3.9337 0.9286 0.8892 34 1 3.9330 0.9288 -0.8907 35 1 5.9569 1.0287 2.6576 36 1 6.1994 5.2525 0.3767 37 1 6.6585 4.0347 -0.8596 38 1 8.5646 6.6571 -0.6492 39 1 9.0525 8.3783 -2.3459 40 1 7.4706 8.7615 -4.1929 41 1 5.4136 7.4323 -4.3563 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178938039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:06 Heat of formation + Delta-G solvation = -47.296926 kcal Electronic energy + Delta-G solvation = -23207.864558 eV Core-core repulsion = 19859.969128 eV Total energy + Delta-G solvation = -3347.895431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82101 -38.53276 -36.93289 -35.27341 -34.06502 -32.31073 -31.57561 -29.73443 -29.54917 -27.93696 -25.09562 -24.16025 -22.49792 -21.80657 -21.21907 -20.45383 -19.27120 -17.37875 -17.11735 -16.44794 -15.65749 -15.61962 -14.79719 -14.70284 -14.51420 -14.00058 -13.77089 -13.66480 -13.18546 -12.94545 -12.67235 -12.48367 -12.36707 -12.26824 -11.95249 -11.55267 -11.46880 -11.38342 -11.28349 -10.99959 -10.76433 -10.58631 -10.55640 -10.42817 -10.37948 -10.23748 -9.78703 -9.17702 -8.64761 -8.52273 -7.76823 -7.65690 -6.50409 -4.20017 1.53793 1.62864 3.02394 3.14178 3.14745 3.47934 3.69564 3.95624 4.02617 4.63165 4.79935 5.02101 5.07169 5.20583 5.27921 5.47403 5.50423 5.57767 5.59618 5.64004 5.68741 5.85358 5.97851 6.08413 6.23383 6.25027 6.35155 6.36083 6.39658 6.50985 6.54649 6.57296 6.66349 6.69273 6.74805 6.81444 6.90230 7.06616 7.24059 7.39514 7.57515 7.77385 8.23359 8.92974 9.35149 9.78421 10.49998 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.005300 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.966294 B = 5282.004432 C = 6715.721159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.117 3.883 5 N -0.429 5.429 6 C -0.347 4.347 7 H 0.090 0.910 8 C 0.049 3.951 9 N -0.852 5.852 10 Si 0.912 3.088 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.471 3.529 15 O -0.584 6.584 16 C 0.084 3.916 17 H 0.098 0.902 18 C -0.079 4.079 19 C -0.170 4.170 20 C -0.072 4.072 21 C -0.159 4.159 22 C -0.092 4.092 23 C -0.146 4.146 24 C 0.112 3.888 25 O -0.282 6.282 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.272 0.728 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 6.456 -1.473 6.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.168 4.168 4 C -0.006 4.006 5 N -0.148 5.148 6 C -0.475 4.475 7 H 0.108 0.892 8 C -0.159 4.159 9 N -0.488 5.488 10 Si 0.738 3.262 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.192 1.192 14 C 0.258 3.742 15 O -0.469 6.469 16 C 0.025 3.975 17 H 0.115 0.885 18 C -0.117 4.117 19 C -0.171 4.171 20 C -0.090 4.090 21 C -0.177 4.177 22 C -0.110 4.110 23 C -0.165 4.165 24 C 0.065 3.935 25 O -0.194 6.194 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.639 5.924 -2.033 6.296 hybrid contribution 0.054 0.251 1.175 1.202 sum 0.693 6.176 -0.858 6.273 Atomic orbital electron populations 1.21758 0.96610 1.00702 1.01500 1.21420 0.95013 0.97644 1.01620 1.21918 0.97787 0.95658 1.01450 1.21479 0.91180 0.84178 1.03798 1.43366 1.54963 1.12098 1.04342 1.19435 1.41553 0.95726 0.90780 0.89196 1.25305 0.93987 0.96246 1.00322 1.69917 1.30908 1.14558 1.33417 0.86169 0.78078 0.79485 0.82463 1.20068 1.20824 1.19219 1.19819 0.82646 0.87228 0.84464 1.90576 1.54783 1.69862 1.31656 1.22979 0.98059 0.95849 0.80572 0.88473 1.21572 0.92727 0.97122 1.00254 1.21126 0.96643 1.00010 0.99326 1.20305 0.95291 0.94635 0.98737 1.20939 1.00390 1.00355 0.96035 1.20761 0.93352 0.98797 0.98114 1.20198 0.99618 0.96311 1.00345 1.19763 0.87895 0.90416 0.95405 1.86915 1.45759 1.55839 1.30908 0.93046 0.93398 0.93048 0.92367 0.92241 0.92284 0.92767 0.87226 0.92930 0.91778 0.87834 0.88767 0.85933 0.85963 0.85672 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.14 16 3 C -0.13 -2.61 5.50 -26.73 -0.15 -2.75 16 4 C 0.12 2.72 4.89 -4.04 -0.02 2.70 16 5 N -0.43 -10.41 2.55 -114.81 -0.29 -10.70 16 6 C -0.35 -8.17 7.45 -14.93 -0.11 -8.28 16 7 H 0.09 2.01 6.78 -52.49 -0.36 1.66 16 8 C 0.05 1.13 4.94 -17.47 -0.09 1.05 16 9 N -0.85 -21.06 11.31 55.50 0.63 -20.43 16 10 Si 0.91 18.24 29.60 -169.99 -5.03 13.21 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 14 C 0.47 11.67 6.98 -10.98 -0.08 11.59 16 15 O -0.58 -16.18 16.24 -13.51 -0.22 -16.40 16 16 C 0.08 1.81 3.14 -26.99 -0.08 1.72 16 17 H 0.10 1.92 7.60 -51.93 -0.39 1.53 16 18 C -0.08 -1.55 5.57 -26.52 -0.15 -1.70 16 19 C -0.17 -3.02 6.27 -104.10 -0.65 -3.68 16 20 C -0.07 -1.06 10.03 -39.72 -0.40 -1.46 16 21 C -0.16 -2.03 10.07 -39.52 -0.40 -2.43 16 22 C -0.09 -1.18 10.02 -39.68 -0.40 -1.58 16 23 C -0.15 -2.25 10.06 -39.30 -0.40 -2.65 16 24 C 0.11 2.09 7.04 -38.95 -0.27 1.82 16 25 O -0.28 -6.16 10.39 -39.23 -0.41 -6.57 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.11 2.66 5.35 -51.93 -0.28 2.38 16 34 H 0.05 1.29 7.59 -51.93 -0.39 0.89 16 35 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 36 H 0.10 1.91 7.57 -51.93 -0.39 1.52 16 37 H 0.09 2.03 7.92 -51.93 -0.41 1.61 16 38 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -28.49 339.58 -9.20 -37.69 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.01 Total: 7.61 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.98 Total: -9.53 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.33 Total: -31.13 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.63 Total: -22.97 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.49 -9.20 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178938039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.608 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds