Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00087 * 2 1 4 4 C 1.50708 * 109.47093 * 125.00323 * 3 2 1 5 5 C 1.38251 * 119.92310 * 270.02405 * 4 3 2 6 6 C 1.38239 * 120.14509 * 179.97438 * 5 4 3 7 7 C 1.38563 * 119.99959 * 359.71498 * 6 5 4 8 8 O 1.35996 * 120.07607 * 180.28182 * 7 6 5 9 9 C 1.39154 * 119.85522 * 0.55423 * 7 6 5 10 10 O 1.35996 * 120.07568 * 179.72409 * 9 7 6 11 11 C 1.42901 * 116.99944 * 174.35435 * 10 9 7 12 12 H 1.09007 * 110.63815 * 321.84040 * 11 10 9 13 13 C 1.55152 * 110.72038 * 198.50663 * 11 10 9 14 14 C 1.55126 * 101.48691 * 205.96753 * 13 11 10 15 15 N 1.47426 * 104.72361 * 37.29156 * 14 13 11 16 16 C 1.36934 * 125.64543 * 155.81922 * 15 14 13 17 17 H 1.08004 * 119.99643 * 179.69556 * 16 15 14 18 18 C 1.38812 * 120.00368 * 359.69069 * 16 15 14 19 19 N 1.31617 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47014 * 180.02562 * 20 18 16 22 22 H 1.48492 * 109.47010 * 300.00637 * 20 18 16 23 23 H 1.48507 * 109.46610 * 60.00220 * 20 18 16 24 24 C 1.47020 * 108.70103 * 335.55404 * 15 14 13 25 25 C 1.38243 * 119.92650 * 89.99568 * 4 3 2 26 26 H 1.07997 * 120.00450 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.99467 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99809 * 179.97438 * 2 1 3 29 29 H 1.08991 * 109.47580 * 5.00351 * 3 2 1 30 30 H 1.09007 * 109.46944 * 244.99534 * 3 2 1 31 31 H 1.07994 * 119.92802 * 359.97438 * 5 4 3 32 32 H 1.08000 * 120.00296 * 179.97438 * 6 5 4 33 33 H 0.96706 * 113.99574 * 270.27457 * 8 7 6 34 34 H 1.08998 * 111.00198 * 324.20702 * 13 11 10 35 35 H 1.09005 * 111.00588 * 88.01877 * 13 11 10 36 36 H 1.09009 * 110.49449 * 278.45102 * 14 13 11 37 37 H 1.09002 * 110.34379 * 156.06120 * 14 13 11 38 38 H 0.97001 * 119.99982 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.88024 * 120.70601 * 24 15 14 40 40 H 1.08998 * 109.88715 * 241.71241 * 24 15 14 41 41 H 1.08000 * 120.00421 * 0.04406 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3326 1.1639 5 6 2.6083 1.8354 2.3839 6 6 3.4822 1.8624 3.4547 7 6 4.7726 1.3793 3.3082 8 8 5.6318 1.3997 4.3622 9 6 5.1893 0.8783 2.0787 10 8 6.4565 0.4082 1.9283 11 6 6.7772 -0.2040 0.6775 12 1 5.9358 -0.7918 0.3105 13 6 8.0503 -1.0815 0.8063 14 6 8.5851 -1.0654 -0.6498 15 7 8.3112 0.2997 -1.1345 16 6 8.9824 0.9381 -2.1430 17 1 8.7012 1.9411 -2.4284 18 6 10.0242 0.2963 -2.7984 19 7 10.3666 -0.9261 -2.4509 20 14 10.9393 1.1670 -4.1746 21 1 11.9987 0.2732 -4.7075 22 1 9.9881 1.5097 -5.2622 23 1 11.5582 2.4102 -3.6484 24 6 7.1940 0.8596 -0.3601 25 6 4.3084 0.8544 1.0093 26 1 -0.5401 -0.9352 0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1316 0.0896 30 1 2.6214 1.4025 -0.9314 31 1 1.6015 2.2080 2.5007 32 1 3.1579 2.2561 4.4067 33 1 6.1515 2.2124 4.4302 34 1 8.7665 -0.6322 1.4941 35 1 7.7964 -2.0950 1.1169 36 1 8.0553 -1.7977 -1.2591 37 1 9.6567 -1.2645 -0.6621 38 1 11.0944 -1.3748 -2.9092 39 1 7.5146 1.7685 0.1491 40 1 6.3578 1.0817 -1.0231 41 1 4.6280 0.4623 0.0550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229338549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -9.147532 kcal Electronic energy + Delta-G solvation = -22734.650564 eV Core-core repulsion = 19388.409415 eV Total energy + Delta-G solvation = -3346.241149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.43093 -38.34002 -37.13546 -36.17428 -34.56877 -32.34144 -30.68045 -29.95371 -29.08970 -27.51824 -26.01668 -24.62176 -22.76108 -21.73363 -20.30533 -20.15485 -19.89619 -18.52979 -17.31432 -16.95433 -16.16922 -15.73786 -15.25168 -14.97940 -14.76251 -14.51576 -13.97744 -13.91744 -13.64299 -13.49624 -12.88276 -12.59510 -12.45953 -12.03735 -11.83415 -11.77792 -11.61065 -11.38944 -11.05827 -11.04834 -10.80508 -10.68384 -10.32682 -10.26377 -10.09739 -9.86073 -9.63600 -9.52754 -8.73349 -8.70993 -7.95456 -6.92255 -5.71245 -3.14074 1.17041 1.42434 2.13221 3.37453 3.39482 3.42591 3.44722 3.61144 4.27750 4.44687 4.68246 4.79685 4.88393 4.99278 5.13709 5.22949 5.24332 5.29829 5.43114 5.50414 5.54818 5.58830 5.65394 5.75842 5.76972 5.87753 6.15891 6.23330 6.27746 6.38009 6.43184 6.46148 6.49467 6.55131 6.56147 6.64875 6.79286 7.39757 7.50612 7.55350 7.76346 7.87314 8.28264 9.14860 9.75208 10.38430 11.32817 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.004015 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.532150 B = 6971.555864 C = 7877.723131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C -0.057 4.057 4 C -0.047 4.047 5 C -0.146 4.146 6 C -0.107 4.107 7 C 0.061 3.939 8 O -0.487 6.487 9 C 0.121 3.879 10 O -0.294 6.294 11 C 0.068 3.932 12 H 0.075 0.925 13 C -0.134 4.134 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.226 4.226 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.289 1.289 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.119 3.881 25 C -0.191 4.191 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.115 0.885 38 H 0.254 0.746 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.252 3.655 9.166 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.159 4.159 3 C -0.094 4.094 4 C -0.047 4.047 5 C -0.164 4.164 6 C -0.125 4.125 7 C 0.016 3.984 8 O -0.296 6.296 9 C 0.074 3.926 10 O -0.207 6.207 11 C 0.012 3.988 12 H 0.093 0.907 13 C -0.172 4.172 14 C 0.028 3.972 15 N -0.328 5.328 16 C -0.354 4.354 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.747 3.253 21 H -0.215 1.215 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.007 4.007 25 C -0.210 4.210 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.239 0.761 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.123 3.048 9.257 18.839 hybrid contribution 0.489 0.822 -0.999 1.383 sum -15.634 3.870 8.257 18.099 Atomic orbital electron populations 1.23815 0.95762 1.01791 1.02080 1.22882 0.95872 0.98176 0.98975 1.19796 0.96987 0.95982 0.96655 1.19535 0.93411 0.96851 0.94913 1.20713 0.99722 1.03756 0.92246 1.21151 0.92626 0.99392 0.99350 1.17780 0.90516 1.04915 0.85170 1.84885 1.55443 1.43746 1.45552 1.19533 0.85101 0.95040 0.92934 1.86239 1.25140 1.71712 1.37598 1.23701 0.98379 0.94536 0.82201 0.90691 1.23221 0.94656 0.97441 1.01921 1.22065 1.03406 0.85776 0.85993 1.44373 1.35410 1.13449 1.39553 1.19035 1.10415 0.97819 1.08128 0.90433 1.24795 0.99075 0.96520 1.00045 1.69739 1.31604 1.12182 1.43575 0.86115 0.79272 0.78390 0.81496 1.21459 1.21152 1.21062 1.21728 0.91728 0.95002 0.92291 1.21244 0.94137 1.06373 0.99266 0.88477 0.88617 0.87192 0.90348 0.89594 0.85864 0.85072 0.76138 0.90721 0.91490 0.96534 0.86752 0.93506 0.94839 0.95711 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 14.32 29.01 0.42 -1.27 16 2 C -0.14 -1.40 9.50 -36.03 -0.34 -1.74 16 3 C -0.06 -0.58 5.78 -29.03 -0.17 -0.75 16 4 C -0.05 -0.57 5.12 -104.61 -0.54 -1.11 16 5 C -0.15 -1.64 9.69 -39.58 -0.38 -2.02 16 6 C -0.11 -1.26 9.98 -39.46 -0.39 -1.66 16 7 C 0.06 0.88 6.72 -39.12 -0.26 0.62 16 8 O -0.49 -6.71 13.29 -34.23 -0.45 -7.16 16 9 C 0.12 1.94 6.64 -39.12 -0.26 1.68 16 10 O -0.29 -5.37 9.66 -34.23 -0.33 -5.70 16 11 C 0.07 1.28 2.77 -24.90 -0.07 1.21 16 12 H 0.08 1.31 6.59 -51.93 -0.34 0.97 16 13 C -0.13 -2.65 6.82 -24.47 -0.17 -2.81 16 14 C 0.15 3.69 5.91 -2.41 -0.01 3.67 16 15 N -0.60 -15.51 3.39 -169.93 -0.58 -16.08 16 16 C -0.23 -6.30 10.27 -15.06 -0.15 -6.46 16 17 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.59 10.08 55.49 0.56 -26.03 16 20 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.12 2.56 6.51 -3.07 -0.02 2.54 16 25 C -0.19 -2.77 8.42 -39.46 -0.33 -3.11 16 26 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.10 0.71 7.84 -52.48 -0.41 0.30 16 28 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.08 0.67 7.73 -51.93 -0.40 0.27 16 30 H 0.09 0.88 8.08 -51.92 -0.42 0.46 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.38 3.63 9.06 45.56 0.41 4.04 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.11 3.09 5.86 -51.93 -0.30 2.79 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 40 H 0.03 0.52 7.43 -51.93 -0.39 0.13 16 41 H 0.14 2.02 5.31 -52.49 -0.28 1.74 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -31.31 340.01 -8.54 -39.85 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.05 Total: 4.67 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.78 Total: -11.54 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.02 Total: -42.11 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.79 Total: -12.86 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.31 -8.54 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229338549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.702 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds