Wall clock time and date at job start Tue Mar 31 2020 07:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47100 * 2 1 4 4 C 1.53007 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46841 * 179.97438 * 4 3 2 6 6 C 1.36947 * 119.99858 * 274.99628 * 5 4 3 7 7 H 1.07996 * 119.99932 * 301.35578 * 6 5 4 8 8 C 1.38811 * 119.99563 * 121.35520 * 6 5 4 9 9 N 1.31615 * 119.99449 * 159.54701 * 8 6 5 10 10 Si 1.86793 * 120.00390 * 339.54857 * 8 6 5 11 11 H 1.48501 * 109.47386 * 95.86814 * 10 8 6 12 12 H 1.48495 * 109.47437 * 215.87229 * 10 8 6 13 13 H 1.48497 * 109.47047 * 335.87085 * 10 8 6 14 14 S 1.65597 * 120.00002 * 95.00428 * 5 4 3 15 15 O 1.42104 * 104.27463 * 203.82723 * 14 5 4 16 16 O 1.42098 * 104.27713 * 331.67815 * 14 5 4 17 17 C 1.81399 * 104.45334 * 87.75525 * 14 5 4 18 18 C 1.53005 * 109.46813 * 305.00140 * 17 14 5 19 19 C 1.53001 * 109.46946 * 179.97438 * 18 17 14 20 20 C 1.53006 * 109.46760 * 59.99849 * 19 18 17 21 21 C 1.52993 * 109.47232 * 299.99795 * 20 19 18 22 22 C 1.52995 * 109.47093 * 185.00269 * 17 14 5 23 23 H 1.09002 * 109.47411 * 299.99702 * 1 2 3 24 24 H 1.08997 * 109.47352 * 60.00588 * 1 2 3 25 25 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47038 * 239.99623 * 2 1 3 27 27 H 1.09004 * 109.47340 * 119.99828 * 2 1 3 28 28 H 1.09000 * 109.47483 * 59.99895 * 3 2 1 29 29 H 1.09005 * 109.47114 * 299.99607 * 3 2 1 30 30 H 1.08997 * 109.47089 * 60.00051 * 4 3 2 31 31 H 1.08990 * 109.46646 * 299.99685 * 4 3 2 32 32 H 0.97001 * 119.99758 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46828 * 65.00012 * 17 14 5 34 34 H 1.09002 * 109.46711 * 299.99958 * 18 17 14 35 35 H 1.09000 * 109.47259 * 59.99604 * 18 17 14 36 36 H 1.08997 * 109.46857 * 299.99971 * 19 18 17 37 37 H 1.09000 * 109.46848 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.46697 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47336 * 60.00415 * 20 19 18 40 40 H 1.09006 * 109.47325 * 300.00267 * 21 20 19 41 41 H 1.09001 * 109.47485 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.46885 * 299.99338 * 22 17 14 43 43 H 1.08993 * 109.47634 * 59.99664 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.1886 3.5033 -1.1830 7 1 4.8296 3.1157 -1.9610 8 6 3.4968 4.6904 -1.3808 9 7 3.9003 5.5419 -2.2997 10 14 1.9932 5.0793 -0.3429 11 1 2.3908 5.9364 0.8028 12 1 0.9909 5.7953 -1.1723 13 1 1.4026 3.8155 0.1659 14 16 4.4528 3.5631 1.4270 15 8 4.3253 4.9510 1.1500 16 8 3.6229 2.9292 2.3907 17 6 6.1921 3.1253 1.6982 18 6 6.3465 1.6034 1.6619 19 6 7.8137 1.2342 1.8899 20 6 8.2659 1.7604 3.2536 21 6 8.1115 3.2821 3.2898 22 6 6.6438 3.6513 3.0620 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9562 -0.8901 30 1 3.9330 0.9288 -0.8908 31 1 3.9336 0.9285 0.8891 32 1 3.4167 6.3712 -2.4382 33 1 6.8053 3.5715 0.9153 34 1 5.7332 1.1573 2.4447 35 1 6.0247 1.2286 0.6903 36 1 8.4266 1.6804 1.1068 37 1 7.9236 0.1500 1.8645 38 1 9.3111 1.4969 3.4163 39 1 7.6531 1.3142 4.0368 40 1 8.7245 3.7283 2.5066 41 1 8.4341 3.6571 4.2611 42 1 6.5338 4.7355 3.0878 43 1 6.0305 3.2052 3.8448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259813464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:13 Heat of formation + Delta-G solvation = -98.221367 kcal Electronic energy + Delta-G solvation = -23309.340926 eV Core-core repulsion = 20094.681197 eV Total energy + Delta-G solvation = -3214.659729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.02357 -36.50149 -35.84671 -34.63166 -33.84709 -31.97913 -30.65258 -30.53330 -28.24911 -24.63031 -22.71969 -22.46485 -22.03968 -20.60630 -19.59506 -18.80427 -17.40346 -16.06043 -15.72529 -15.21490 -14.77393 -14.55463 -14.41756 -14.01099 -13.89171 -13.68528 -13.22210 -12.91425 -12.81012 -12.46910 -12.23076 -12.07391 -11.87004 -11.48362 -11.30215 -11.17908 -11.13031 -11.00601 -10.95577 -10.78841 -10.76318 -10.56664 -10.30185 -10.16664 -10.03910 -9.99868 -9.76314 -9.69582 -9.07150 -8.68453 -7.75790 -6.52773 -4.27767 1.50977 3.36087 3.47744 3.60404 3.97462 4.42281 4.80453 4.81411 4.91561 4.97731 5.09763 5.26089 5.37244 5.41476 5.46188 5.53857 5.57905 5.67215 5.68723 5.79287 5.80818 5.83905 5.90731 6.11185 6.14346 6.19402 6.20972 6.25316 6.26107 6.30810 6.31255 6.39944 6.41127 6.45503 6.54406 6.61539 6.80882 7.05884 7.20109 7.71990 8.18054 8.99963 9.13239 10.48830 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.008009 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.807189 B = 3495.210658 C = 4495.562156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.136 3.864 5 N -0.838 5.838 6 C -0.273 4.273 7 H 0.091 0.909 8 C 0.100 3.900 9 N -0.824 5.824 10 Si 0.852 3.148 11 H -0.243 1.243 12 H -0.292 1.292 13 H -0.243 1.243 14 S 2.473 3.527 15 O -0.955 6.955 16 O -0.999 6.999 17 C -0.606 4.606 18 C -0.094 4.094 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.104 4.104 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.281 0.719 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -9.020 5.834 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.178 4.178 4 C 0.009 3.991 5 N -0.662 5.662 6 C -0.420 4.420 7 H 0.109 0.891 8 C -0.117 4.117 9 N -0.459 5.459 10 Si 0.677 3.323 11 H -0.168 1.168 12 H -0.219 1.219 13 H -0.166 1.166 14 S 2.578 3.422 15 O -0.944 6.944 16 O -0.988 6.988 17 C -0.708 4.708 18 C -0.133 4.133 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.142 4.142 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.905 -8.375 6.555 11.025 hybrid contribution 0.042 0.308 0.225 0.384 sum 2.948 -8.067 6.780 10.942 Atomic orbital electron populations 1.21762 0.96510 1.00708 1.01827 1.21481 0.95429 0.97590 1.01424 1.22182 0.96844 0.95658 1.03124 1.21245 0.93315 0.83899 1.00608 1.52924 1.71019 1.21276 1.21022 1.18761 1.26257 1.04996 0.91959 0.89101 1.25889 0.96994 0.94778 0.94080 1.69800 1.37078 1.07847 1.31142 0.87217 0.81348 0.81567 0.82143 1.16770 1.21913 1.16626 1.12783 0.77493 0.76460 0.75482 1.93454 1.85004 1.32728 1.83210 1.93362 1.64752 1.76981 1.63736 1.30706 1.32078 1.03990 1.03997 1.21223 0.97376 0.92092 1.02566 1.21475 0.96467 0.99895 0.97241 1.21533 1.00448 0.95860 0.97803 1.21458 0.96172 0.96107 1.01175 1.21273 0.97586 1.00495 0.94891 0.92957 0.92843 0.93365 0.92195 0.92360 0.91443 0.91134 0.91629 0.92340 0.90928 0.85863 0.91415 0.90469 0.91905 0.92149 0.92382 0.92122 0.91841 0.92241 0.91542 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.78 5.93 -26.74 -0.16 -1.94 16 3 C -0.14 -2.62 4.15 -26.73 -0.11 -2.73 16 4 C 0.14 2.59 4.06 -4.04 -0.02 2.58 16 5 N -0.84 -19.02 1.59 -59.91 -0.10 -19.11 16 6 C -0.27 -6.94 9.51 -15.05 -0.14 -7.09 16 7 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.10 2.73 4.64 -17.43 -0.08 2.65 16 9 N -0.82 -23.12 13.97 55.49 0.78 -22.34 16 10 Si 0.85 22.08 24.79 -169.99 -4.21 17.87 16 11 H -0.24 -6.76 6.24 56.52 0.35 -6.40 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 13 H -0.24 -5.93 4.55 56.52 0.26 -5.67 16 14 S 2.47 57.53 3.92 -107.50 -0.42 57.10 16 15 O -0.95 -25.85 12.52 -57.54 -0.72 -26.57 16 16 O -1.00 -24.21 16.74 -57.54 -0.96 -25.18 16 17 C -0.61 -11.24 2.87 -26.73 -0.08 -11.31 16 18 C -0.09 -1.50 4.16 -26.73 -0.11 -1.61 16 19 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 20 C -0.12 -1.48 5.92 -26.73 -0.16 -1.63 16 21 C -0.11 -1.50 5.92 -26.71 -0.16 -1.66 16 22 C -0.10 -1.73 5.21 -26.71 -0.14 -1.87 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.43 6.96 -51.93 -0.36 1.06 16 29 H 0.07 1.41 7.50 -51.93 -0.39 1.02 16 30 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 31 H 0.06 1.01 6.42 -51.93 -0.33 0.68 16 32 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.12 2.32 8.14 -51.93 -0.42 1.89 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.20 6.42 -51.93 -0.33 0.87 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -30.00 333.53 -9.49 -39.49 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.93 Total: 1.65 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: -0.94 Total: -27.93 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.68 Total: -41.45 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -1.68 Total: -51.74 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.21 Total: 17.87 kcal Atomic # 16 Polarization: 57.53 SS G_CDS: -0.42 Total: 57.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.00 -9.49 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259813464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.735 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds