Wall clock time and date at job start Tue Mar 31 2020 07:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47100 * 2 1 4 4 C 1.53007 * 109.47148 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46841 * 179.97438 * 4 3 2 6 6 C 1.36947 * 119.99858 * 274.99628 * 5 4 3 7 7 H 1.07996 * 119.99932 * 301.35578 * 6 5 4 8 8 C 1.38811 * 119.99563 * 121.35520 * 6 5 4 9 9 N 1.31615 * 119.99449 * 159.54701 * 8 6 5 10 10 Si 1.86793 * 120.00390 * 339.54857 * 8 6 5 11 11 H 1.48501 * 109.47386 * 95.86814 * 10 8 6 12 12 H 1.48495 * 109.47437 * 215.87229 * 10 8 6 13 13 H 1.48497 * 109.47047 * 335.87085 * 10 8 6 14 14 S 1.65597 * 120.00002 * 95.00428 * 5 4 3 15 15 O 1.42104 * 104.27463 * 203.82723 * 14 5 4 16 16 O 1.42098 * 104.27713 * 331.67815 * 14 5 4 17 17 C 1.81399 * 104.45334 * 87.75525 * 14 5 4 18 18 C 1.53005 * 109.46813 * 305.00140 * 17 14 5 19 19 C 1.53001 * 109.46946 * 179.97438 * 18 17 14 20 20 C 1.53006 * 109.46760 * 59.99849 * 19 18 17 21 21 C 1.52993 * 109.47232 * 299.99795 * 20 19 18 22 22 C 1.52995 * 109.47093 * 185.00269 * 17 14 5 23 23 H 1.09002 * 109.47411 * 299.99702 * 1 2 3 24 24 H 1.08997 * 109.47352 * 60.00588 * 1 2 3 25 25 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47038 * 239.99623 * 2 1 3 27 27 H 1.09004 * 109.47340 * 119.99828 * 2 1 3 28 28 H 1.09000 * 109.47483 * 59.99895 * 3 2 1 29 29 H 1.09005 * 109.47114 * 299.99607 * 3 2 1 30 30 H 1.08997 * 109.47089 * 60.00051 * 4 3 2 31 31 H 1.08990 * 109.46646 * 299.99685 * 4 3 2 32 32 H 0.97001 * 119.99758 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.46828 * 65.00012 * 17 14 5 34 34 H 1.09002 * 109.46711 * 299.99958 * 18 17 14 35 35 H 1.09000 * 109.47259 * 59.99604 * 18 17 14 36 36 H 1.08997 * 109.46857 * 299.99971 * 19 18 17 37 37 H 1.09000 * 109.46848 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.46697 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.47336 * 60.00415 * 20 19 18 40 40 H 1.09006 * 109.47325 * 300.00267 * 21 20 19 41 41 H 1.09001 * 109.47485 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.46885 * 299.99338 * 22 17 14 43 43 H 1.08993 * 109.47634 * 59.99664 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.1886 3.5033 -1.1830 7 1 4.8296 3.1157 -1.9610 8 6 3.4968 4.6904 -1.3808 9 7 3.9003 5.5419 -2.2997 10 14 1.9932 5.0793 -0.3429 11 1 2.3908 5.9364 0.8028 12 1 0.9909 5.7953 -1.1723 13 1 1.4026 3.8155 0.1659 14 16 4.4528 3.5631 1.4270 15 8 4.3253 4.9510 1.1500 16 8 3.6229 2.9292 2.3907 17 6 6.1921 3.1253 1.6982 18 6 6.3465 1.6034 1.6619 19 6 7.8137 1.2342 1.8899 20 6 8.2659 1.7604 3.2536 21 6 8.1115 3.2821 3.2898 22 6 6.6438 3.6513 3.0620 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9562 -0.8901 30 1 3.9330 0.9288 -0.8908 31 1 3.9336 0.9285 0.8891 32 1 3.4167 6.3712 -2.4382 33 1 6.8053 3.5715 0.9153 34 1 5.7332 1.1573 2.4447 35 1 6.0247 1.2286 0.6903 36 1 8.4266 1.6804 1.1068 37 1 7.9236 0.1500 1.8645 38 1 9.3111 1.4969 3.4163 39 1 7.6531 1.3142 4.0368 40 1 8.7245 3.7283 2.5066 41 1 8.4341 3.6571 4.2611 42 1 6.5338 4.7355 3.0878 43 1 6.0305 3.2052 3.8448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259813464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:12 Heat of formation + Delta-G solvation = -116.894080 kcal Electronic energy + Delta-G solvation = -23310.150636 eV Core-core repulsion = 20094.681197 eV Total energy + Delta-G solvation = -3215.469438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.26173 -38.15519 -37.87617 -36.65582 -35.38058 -33.81769 -31.92402 -31.72401 -29.73011 -26.41131 -24.10716 -23.65969 -23.48622 -21.98842 -20.79248 -20.73103 -19.29499 -17.77288 -17.50631 -17.01012 -16.38236 -16.13328 -15.92770 -15.34015 -15.16282 -15.10877 -14.88562 -14.49197 -14.30525 -13.93717 -13.53936 -13.46049 -13.38811 -13.18973 -13.10883 -12.84738 -12.72950 -12.61860 -12.41890 -12.22311 -12.13892 -11.92620 -11.86159 -11.69691 -11.53295 -11.43119 -11.28485 -11.10603 -10.84019 -10.60787 -9.58264 -8.56856 -6.31223 -0.35192 1.24647 1.36935 1.46855 2.10769 2.36680 2.89582 3.13068 3.38837 3.57753 3.78723 3.94870 4.11577 4.14601 4.23770 4.27151 4.35492 4.37984 4.44502 4.47715 4.56427 4.56681 4.78229 4.84270 4.88334 4.93954 4.97995 5.01554 5.06869 5.16290 5.17525 5.25172 5.27367 5.29463 5.31114 5.38813 5.50543 5.54921 5.59197 5.89592 6.14874 7.01155 7.20512 8.49877 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.008009 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.807189 B = 3495.210658 C = 4495.562156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.852 5.852 6 C -0.282 4.282 7 H 0.083 0.917 8 C 0.070 3.930 9 N -0.872 5.872 10 Si 0.862 3.138 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.227 1.227 14 S 2.492 3.508 15 O -0.997 6.997 16 O -1.008 7.008 17 C -0.577 4.577 18 C -0.102 4.102 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.115 4.115 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.279 0.721 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -12.125 7.676 15.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.181 4.181 4 C 0.000 4.000 5 N -0.679 5.679 6 C -0.423 4.423 7 H 0.101 0.899 8 C -0.141 4.141 9 N -0.509 5.509 10 Si 0.688 3.312 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.150 1.150 14 S 2.600 3.400 15 O -0.987 6.987 16 O -0.998 6.998 17 C -0.687 4.687 18 C -0.140 4.140 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.154 4.154 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.661 -11.471 8.275 14.893 hybrid contribution -0.381 1.116 -0.030 1.180 sum 4.280 -10.355 8.245 13.911 Atomic orbital electron populations 1.21781 0.95704 1.02280 1.01184 1.21468 0.96181 0.94656 1.03050 1.22179 0.96968 0.98237 1.00704 1.21567 0.93449 0.82370 1.02656 1.52838 1.73165 1.22350 1.19533 1.18521 1.25993 1.04600 0.93181 0.89922 1.26199 0.97867 0.95648 0.94432 1.69827 1.38682 1.08818 1.33541 0.87041 0.81635 0.81631 0.80909 1.20182 1.21064 1.14955 1.10372 0.79458 0.75202 0.74984 1.93438 1.86487 1.34923 1.83806 1.93375 1.66202 1.76900 1.63318 1.30339 1.25474 1.06930 1.05907 1.21416 1.00253 0.89164 1.03196 1.21501 0.93722 1.01713 0.97912 1.21589 1.02284 0.94532 0.97323 1.21491 0.93150 0.97477 1.02577 1.21469 1.00494 1.00222 0.93238 0.93894 0.93319 0.90650 0.90236 0.90962 0.94364 0.93068 0.89421 0.90222 0.91172 0.85644 0.90784 0.90125 0.91845 0.89508 0.89730 0.91516 0.91680 0.89952 0.92227 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.91 71.98 0.71 -3.09 16 2 C -0.12 -3.13 5.93 30.59 0.18 -2.95 16 3 C -0.14 -5.27 4.15 30.59 0.13 -5.14 16 4 C 0.13 4.58 4.06 86.38 0.35 4.93 16 5 N -0.85 -38.58 1.59 -343.45 -0.55 -39.12 16 6 C -0.28 -14.68 9.51 84.03 0.80 -13.88 16 7 H 0.08 4.40 8.06 -2.91 -0.02 4.37 16 8 C 0.07 4.00 4.64 84.86 0.39 4.39 16 9 N -0.87 -51.37 13.97 21.65 0.30 -51.07 16 10 Si 0.86 46.45 24.79 68.60 1.70 48.15 16 11 H -0.28 -16.15 6.24 99.48 0.62 -15.53 16 12 H -0.28 -14.61 7.11 99.48 0.71 -13.91 16 13 H -0.23 -11.42 4.55 99.48 0.45 -10.97 16 14 S 2.49 115.05 3.92 -56.49 -0.22 114.83 16 15 O -1.00 -55.30 12.52 -127.65 -1.60 -56.90 16 16 O -1.01 -47.99 16.74 -127.65 -2.14 -50.13 16 17 C -0.58 -20.09 2.87 30.59 0.09 -20.00 16 18 C -0.10 -2.86 4.16 30.60 0.13 -2.74 16 19 C -0.11 -2.37 5.92 30.60 0.18 -2.19 16 20 C -0.12 -2.34 5.92 30.59 0.18 -2.16 16 21 C -0.11 -2.48 5.92 30.61 0.18 -2.30 16 22 C -0.12 -3.52 5.21 30.61 0.16 -3.37 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.76 8.14 -2.38 -0.02 1.75 16 28 H 0.04 1.61 6.96 -2.39 -0.02 1.60 16 29 H 0.05 2.07 7.50 -2.38 -0.02 2.05 16 30 H 0.09 2.83 8.08 -2.39 -0.02 2.81 16 31 H 0.08 2.55 6.42 -2.39 -0.02 2.53 16 32 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 33 H 0.13 4.47 8.14 -2.39 -0.02 4.45 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.23 6.42 -2.39 -0.02 2.22 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.09 333.53 1.59 -66.49 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.61 Total: 16.24 kcal Atomic # 6 Polarization: -51.98 SS G_CDS: 3.48 Total: -48.50 kcal Atomic # 7 Polarization: -89.95 SS G_CDS: -0.24 Total: -90.19 kcal Atomic # 8 Polarization: -103.29 SS G_CDS: -3.74 Total: -107.03 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.70 Total: 48.15 kcal Atomic # 16 Polarization: 115.05 SS G_CDS: -0.22 Total: 114.83 kcal Total: -68.09 1.59 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259813464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.401 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds