Wall clock time and date at job start Tue Mar 31 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47476 * 2 1 4 4 C 1.53003 * 109.47264 * 239.99775 * 2 1 3 5 5 C 1.53005 * 109.47134 * 120.00202 * 2 1 3 6 6 H 1.08994 * 112.77800 * 288.54082 * 5 2 1 7 7 C 1.53491 * 113.46876 * 157.75736 * 5 2 1 8 8 C 1.53752 * 83.25973 * 218.98375 * 7 5 2 9 9 N 1.47068 * 113.46489 * 59.32230 * 5 2 1 10 10 S 1.65599 * 136.06135 * 321.86462 * 9 5 2 11 11 O 1.42100 * 104.27429 * 326.31371 * 10 9 5 12 12 O 1.42102 * 104.27743 * 198.45277 * 10 9 5 13 13 C 1.81397 * 104.44798 * 82.38259 * 10 9 5 14 14 C 1.52999 * 109.47363 * 171.64269 * 13 10 9 15 15 C 1.53000 * 109.47318 * 179.97438 * 14 13 10 16 16 C 1.50708 * 109.46877 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99841 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99734 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99799 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47255 * 89.99947 * 20 18 16 22 22 H 1.48502 * 109.46893 * 210.00035 * 20 18 16 23 23 H 1.48497 * 109.47262 * 329.99902 * 20 18 16 24 24 H 1.08995 * 109.46974 * 278.23459 * 1 2 3 25 25 H 1.08999 * 109.46540 * 38.22876 * 1 2 3 26 26 H 1.08995 * 109.47099 * 158.22855 * 1 2 3 27 27 H 1.09002 * 109.47215 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47064 * 299.99834 * 3 2 1 29 29 H 1.09000 * 109.46596 * 59.99974 * 3 2 1 30 30 H 1.09001 * 109.47359 * 289.88473 * 4 2 1 31 31 H 1.09008 * 109.46499 * 49.87878 * 4 2 1 32 32 H 1.08992 * 109.47325 * 169.88011 * 4 2 1 33 33 H 1.09005 * 114.20756 * 332.74289 * 7 5 2 34 34 H 1.09006 * 114.20808 * 105.56462 * 7 5 2 35 35 H 1.09005 * 113.46457 * 271.50513 * 8 7 5 36 36 H 1.09002 * 113.55125 * 140.98625 * 8 7 5 37 37 H 1.09005 * 109.47497 * 51.64218 * 13 10 9 38 38 H 1.09001 * 109.47690 * 291.64489 * 13 10 9 39 39 H 1.09005 * 109.47381 * 300.00655 * 14 13 10 40 40 H 1.09011 * 109.46782 * 60.00005 * 14 13 10 41 41 H 1.09000 * 109.47299 * 299.99925 * 15 14 13 42 42 H 1.08995 * 109.47432 * 60.00523 * 15 14 13 43 43 H 0.96997 * 119.99608 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.8794 -0.1484 2.1625 7 6 3.4724 -1.2538 1.1057 8 6 2.9116 -2.4530 1.8876 9 7 1.5863 -2.1169 1.3459 10 16 0.1936 -2.9445 1.0028 11 8 -0.8443 -2.0155 1.2841 12 8 0.3140 -4.1538 1.7393 13 6 0.2890 -3.2721 -0.7788 14 6 -0.8448 -4.2155 -1.1854 15 6 -0.7647 -4.4913 -2.6882 16 6 -1.8820 -5.4200 -3.0887 17 1 -2.5796 -5.7774 -2.3457 18 6 -2.0135 -5.8135 -4.4036 19 7 -2.9881 -6.6243 -4.7530 20 14 -0.8072 -5.1947 -5.6887 21 1 0.3405 -6.1323 -5.7824 22 1 -1.4872 -5.1112 -7.0062 23 1 -0.3161 -3.8485 -5.2990 24 1 -0.3633 0.1472 1.0170 25 1 -0.3632 0.8073 -0.6359 26 1 -0.3633 -0.9543 -0.3811 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.8316 -1.7878 -1.1636 31 1 1.5367 -0.3223 -2.1300 32 1 3.1149 -0.5676 -1.3441 33 1 3.7640 -1.4815 0.0803 34 1 4.2202 -0.6777 1.6508 35 1 2.9808 -2.3366 2.9692 36 1 3.2909 -3.4145 1.5415 37 1 1.2479 -3.7347 -1.0124 38 1 0.1952 -2.3342 -1.3263 39 1 -0.7511 -5.1534 -0.6379 40 1 -1.8038 -3.7528 -0.9518 41 1 -0.8588 -3.5532 -3.2353 42 1 0.1941 -4.9538 -2.9221 43 1 -3.0808 -6.9008 -5.6781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309956983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:27 Heat of formation + Delta-G solvation = -44.578024 kcal Electronic energy + Delta-G solvation = -22758.911987 eV Core-core repulsion = 19546.578408 eV Total energy + Delta-G solvation = -3212.333579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45164 -37.08433 -35.80862 -35.61780 -34.74509 -32.23959 -29.18414 -28.56371 -27.39856 -26.97910 -25.87764 -23.60909 -21.61786 -20.37337 -19.87875 -18.23478 -17.54933 -16.94920 -16.31034 -16.13088 -15.54171 -14.85876 -14.38190 -14.32433 -14.18011 -13.84182 -13.65203 -13.10919 -12.92012 -12.74822 -12.56211 -12.34607 -12.21210 -12.05701 -11.94219 -11.82955 -11.68849 -11.57651 -11.37242 -11.11741 -11.00836 -10.95428 -10.77086 -10.48206 -10.29624 -10.09848 -9.85380 -9.69587 -9.28360 -9.05407 -8.59277 -6.08906 -4.08100 0.35361 2.68836 3.25765 3.33363 3.35448 3.93965 4.07427 4.24424 4.39733 4.40650 4.51037 4.64857 4.84576 4.96656 4.99256 5.03512 5.16917 5.24686 5.31692 5.38636 5.45157 5.48752 5.58256 5.60367 5.69726 5.77325 5.80279 5.84718 5.92417 5.98701 6.09747 6.13608 6.15302 6.26377 6.41238 6.47026 6.66862 7.11923 7.26172 7.70530 8.47331 8.95627 9.52234 11.04474 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.004876 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.283723 B = 5740.643689 C = 6310.383819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.164 4.164 5 C 0.169 3.831 6 H 0.092 0.908 7 C -0.158 4.158 8 C 0.128 3.872 9 N -1.043 6.043 10 S 2.619 3.381 11 O -0.952 6.952 12 O -0.959 6.959 13 C -0.624 4.624 14 C -0.096 4.096 15 C -0.003 4.003 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.879 3.121 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.016 0.984 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.943 15.897 11.200 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.221 4.221 5 C 0.063 3.937 6 H 0.110 0.890 7 C -0.197 4.197 8 C 0.003 3.997 9 N -0.880 5.880 10 S 2.718 3.282 11 O -0.942 6.942 12 O -0.950 6.950 13 C -0.755 4.755 14 C -0.135 4.135 15 C -0.042 4.042 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.147 0.853 38 H 0.154 0.846 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.972 15.435 11.670 24.466 hybrid contribution 0.759 0.203 -1.402 1.607 sum 15.731 15.638 10.268 24.443 Atomic orbital electron populations 1.22385 0.92860 1.02501 1.03816 1.20956 0.96866 0.96272 0.94781 1.21769 1.00874 0.94275 1.02197 1.22346 1.01450 1.01337 0.96948 1.22211 0.91738 0.82152 0.97604 0.89017 1.23824 0.96051 0.97600 1.02233 1.22377 0.79846 0.99101 0.98384 1.60302 1.29584 1.19362 1.78795 1.04761 0.72200 0.73202 0.78029 1.93608 1.54397 1.62253 1.83952 1.93552 1.85333 1.46851 1.69241 1.30978 1.09578 1.10673 1.24240 1.21315 0.93719 0.96701 1.01785 1.19518 0.97572 0.97154 0.89919 1.21136 1.12559 1.27746 0.95036 0.90742 1.25017 0.95314 0.94555 0.98463 1.69910 1.31565 1.34300 1.18109 0.86786 0.81526 0.79948 0.81082 1.20220 1.21250 1.19027 0.90534 0.92229 0.92446 0.92400 0.92144 0.92414 0.91522 0.91952 0.91824 0.88010 0.89938 0.90082 0.90412 0.85315 0.84570 0.90886 0.91249 0.96193 0.96619 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 6.92 37.16 0.26 -1.64 16 2 C -0.09 -0.82 0.75 -154.50 -0.12 -0.93 16 3 C -0.13 -0.96 8.34 37.16 0.31 -0.65 16 4 C -0.16 -1.54 6.58 37.16 0.24 -1.29 16 5 C 0.17 1.52 3.18 -72.40 -0.23 1.29 16 6 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 7 C -0.16 -1.04 7.69 -26.09 -0.20 -1.24 16 8 C 0.13 1.10 8.65 -8.38 -0.07 1.03 16 9 N -1.04 -12.04 3.34 -117.76 -0.39 -12.43 16 10 S 2.62 40.68 5.09 -107.50 -0.55 40.13 16 11 O -0.95 -16.57 14.05 -57.54 -0.81 -17.38 16 12 O -0.96 -17.99 18.03 -57.54 -1.04 -19.03 16 13 C -0.62 -9.57 4.04 37.16 0.15 -9.42 16 14 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 15 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 16 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 17 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 20 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.08 0.99 7.01 -51.93 -0.36 0.62 16 25 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 26 H 0.06 0.78 3.36 -51.93 -0.17 0.60 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.68 3.84 -51.93 -0.20 0.48 16 31 H 0.06 0.60 8.11 -51.92 -0.42 0.18 16 32 H 0.06 0.47 6.76 -51.93 -0.35 0.12 16 33 H 0.10 0.65 5.78 -51.93 -0.30 0.35 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.13 1.70 7.82 -51.92 -0.41 1.29 16 38 H 0.14 1.90 4.55 -51.92 -0.24 1.67 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 42 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 332.65 15.07 5.01 5.01 Total: -1.00 -34.78 332.65 -9.03 -43.81 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.02 Total: -1.25 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -0.34 Total: -28.62 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.38 Total: -39.48 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.85 Total: -36.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 40.68 SS G_CDS: -0.55 Total: 40.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.78 -9.03 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309956983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.771 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds