Wall clock time and date at job start Tue Mar 31 2020 06:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47476 * 2 1 4 4 C 1.53003 * 109.47264 * 239.99775 * 2 1 3 5 5 C 1.53005 * 109.47134 * 120.00202 * 2 1 3 6 6 H 1.08994 * 112.77800 * 288.54082 * 5 2 1 7 7 C 1.53491 * 113.46876 * 157.75736 * 5 2 1 8 8 C 1.53752 * 83.25973 * 218.98375 * 7 5 2 9 9 N 1.47068 * 113.46489 * 59.32230 * 5 2 1 10 10 S 1.65599 * 136.06135 * 321.86462 * 9 5 2 11 11 O 1.42100 * 104.27429 * 326.31371 * 10 9 5 12 12 O 1.42102 * 104.27743 * 198.45277 * 10 9 5 13 13 C 1.81397 * 104.44798 * 82.38259 * 10 9 5 14 14 C 1.52999 * 109.47363 * 171.64269 * 13 10 9 15 15 C 1.53000 * 109.47318 * 179.97438 * 14 13 10 16 16 C 1.50708 * 109.46877 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00024 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99841 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99734 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99799 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47255 * 89.99947 * 20 18 16 22 22 H 1.48502 * 109.46893 * 210.00035 * 20 18 16 23 23 H 1.48497 * 109.47262 * 329.99902 * 20 18 16 24 24 H 1.08995 * 109.46974 * 278.23459 * 1 2 3 25 25 H 1.08999 * 109.46540 * 38.22876 * 1 2 3 26 26 H 1.08995 * 109.47099 * 158.22855 * 1 2 3 27 27 H 1.09002 * 109.47215 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47064 * 299.99834 * 3 2 1 29 29 H 1.09000 * 109.46596 * 59.99974 * 3 2 1 30 30 H 1.09001 * 109.47359 * 289.88473 * 4 2 1 31 31 H 1.09008 * 109.46499 * 49.87878 * 4 2 1 32 32 H 1.08992 * 109.47325 * 169.88011 * 4 2 1 33 33 H 1.09005 * 114.20756 * 332.74289 * 7 5 2 34 34 H 1.09006 * 114.20808 * 105.56462 * 7 5 2 35 35 H 1.09005 * 113.46457 * 271.50513 * 8 7 5 36 36 H 1.09002 * 113.55125 * 140.98625 * 8 7 5 37 37 H 1.09005 * 109.47497 * 51.64218 * 13 10 9 38 38 H 1.09001 * 109.47690 * 291.64489 * 13 10 9 39 39 H 1.09005 * 109.47381 * 300.00655 * 14 13 10 40 40 H 1.09011 * 109.46782 * 60.00005 * 14 13 10 41 41 H 1.09000 * 109.47299 * 299.99925 * 15 14 13 42 42 H 1.08995 * 109.47432 * 60.00523 * 15 14 13 43 43 H 0.96997 * 119.99608 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.8794 -0.1484 2.1625 7 6 3.4724 -1.2538 1.1057 8 6 2.9116 -2.4530 1.8876 9 7 1.5863 -2.1169 1.3459 10 16 0.1936 -2.9445 1.0028 11 8 -0.8443 -2.0155 1.2841 12 8 0.3140 -4.1538 1.7393 13 6 0.2890 -3.2721 -0.7788 14 6 -0.8448 -4.2155 -1.1854 15 6 -0.7647 -4.4913 -2.6882 16 6 -1.8820 -5.4200 -3.0887 17 1 -2.5796 -5.7774 -2.3457 18 6 -2.0135 -5.8135 -4.4036 19 7 -2.9881 -6.6243 -4.7530 20 14 -0.8072 -5.1947 -5.6887 21 1 0.3405 -6.1323 -5.7824 22 1 -1.4872 -5.1112 -7.0062 23 1 -0.3161 -3.8485 -5.2990 24 1 -0.3633 0.1472 1.0170 25 1 -0.3632 0.8073 -0.6359 26 1 -0.3633 -0.9543 -0.3811 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.8316 -1.7878 -1.1636 31 1 1.5367 -0.3223 -2.1300 32 1 3.1149 -0.5676 -1.3441 33 1 3.7640 -1.4815 0.0803 34 1 4.2202 -0.6777 1.6508 35 1 2.9808 -2.3366 2.9692 36 1 3.2909 -3.4145 1.5415 37 1 1.2479 -3.7347 -1.0124 38 1 0.1952 -2.3342 -1.3263 39 1 -0.7511 -5.1534 -0.6379 40 1 -1.8038 -3.7528 -0.9518 41 1 -0.8588 -3.5532 -3.2353 42 1 0.1941 -4.9538 -2.9221 43 1 -3.0808 -6.9008 -5.6781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309956983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:27 Heat of formation + Delta-G solvation = -69.106377 kcal Electronic energy + Delta-G solvation = -22759.975616 eV Core-core repulsion = 19546.578408 eV Total energy + Delta-G solvation = -3213.397208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15374 -38.34844 -37.11493 -36.74482 -36.13595 -34.29616 -30.43251 -29.80552 -28.19129 -27.74673 -26.55607 -25.38063 -22.60486 -21.89475 -20.73087 -19.30189 -19.01376 -18.46327 -17.50463 -17.30397 -16.45482 -16.20639 -16.10264 -15.37997 -15.12744 -14.91798 -14.62288 -14.56614 -14.05237 -13.91313 -13.67014 -13.56149 -13.31619 -13.25839 -13.18558 -12.95015 -12.78404 -12.71763 -12.63757 -12.29978 -12.14099 -11.88093 -11.76346 -11.70271 -11.55634 -11.52940 -11.37712 -11.12946 -10.97062 -10.80129 -9.93617 -8.32416 -6.38775 -0.84392 1.34398 1.37287 1.48973 1.65476 2.34160 2.75633 3.01738 3.02787 3.52079 3.60593 3.72093 3.78147 3.88617 3.97984 4.21059 4.27206 4.43262 4.47476 4.49134 4.67237 4.71046 4.75202 4.80714 4.82608 4.88962 4.95594 5.00984 5.11045 5.12151 5.16127 5.25280 5.28683 5.39773 5.40346 5.43228 5.48713 5.56076 5.59068 5.74095 6.22158 6.68910 7.25910 8.84727 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.004876 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.283723 B = 5740.643689 C = 6310.383819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.168 4.168 5 C 0.160 3.840 6 H 0.100 0.900 7 C -0.134 4.134 8 C 0.116 3.884 9 N -1.047 6.047 10 S 2.631 3.369 11 O -0.980 6.980 12 O -0.999 6.999 13 C -0.615 4.615 14 C -0.100 4.100 15 C -0.001 4.001 16 C -0.546 4.546 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.952 5.952 20 Si 0.954 3.046 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.239 1.239 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.032 0.968 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.925 18.252 10.636 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.225 4.225 5 C 0.055 3.945 6 H 0.118 0.882 7 C -0.173 4.173 8 C -0.008 4.008 9 N -0.888 5.888 10 S 2.731 3.269 11 O -0.970 6.970 12 O -0.990 6.990 13 C -0.746 4.746 14 C -0.139 4.139 15 C -0.040 4.040 16 C -0.584 4.584 17 H 0.047 0.953 18 C -0.194 4.194 19 N -0.592 5.592 20 Si 0.776 3.224 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.162 1.162 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.950 17.793 11.132 28.277 hybrid contribution -0.540 -0.526 -1.128 1.357 sum 18.410 17.267 10.004 27.150 Atomic orbital electron populations 1.22414 0.95433 1.01541 1.02720 1.20969 0.94667 0.97925 0.95139 1.21749 1.02168 0.92493 1.02319 1.22393 1.03101 1.00486 0.96542 1.22558 0.93206 0.80777 0.97916 0.88182 1.23785 0.94817 0.95938 1.02778 1.22758 0.77997 1.00518 0.99546 1.60044 1.29260 1.20764 1.78737 1.03994 0.72772 0.72423 0.77741 1.93574 1.56558 1.62598 1.84292 1.93494 1.86277 1.48961 1.70261 1.30887 1.08757 1.10374 1.24543 1.21165 0.95474 0.97539 0.99731 1.19469 0.96060 0.96284 0.92162 1.21531 1.13453 1.28806 0.94576 0.95333 1.26102 0.97519 0.94584 1.01194 1.70082 1.34034 1.36108 1.18962 0.85603 0.78791 0.80699 0.77265 1.18765 1.20961 1.16218 0.92182 0.91689 0.94424 0.90239 0.92275 0.92173 0.92582 0.92505 0.89259 0.87181 0.86657 0.88911 0.89994 0.82670 0.82935 0.91983 0.92322 0.95066 0.94984 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 6.92 71.98 0.50 -3.28 16 2 C -0.09 -1.36 0.75 -52.18 -0.04 -1.40 16 3 C -0.13 -1.40 8.34 71.98 0.60 -0.80 16 4 C -0.17 -2.56 6.58 71.98 0.47 -2.09 16 5 C 0.16 2.39 3.18 41.79 0.13 2.52 16 6 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.13 -1.14 7.69 31.01 0.24 -0.90 16 8 C 0.12 1.63 8.65 83.26 0.72 2.35 16 9 N -1.05 -22.18 3.34 -526.47 -1.76 -23.94 16 10 S 2.63 81.60 5.09 -56.49 -0.29 81.31 16 11 O -0.98 -35.01 14.05 -127.65 -1.79 -36.80 16 12 O -1.00 -38.14 18.03 -127.65 -2.30 -40.44 16 13 C -0.62 -18.23 4.04 71.98 0.29 -17.94 16 14 C -0.10 -4.05 5.16 30.59 0.16 -3.89 16 15 C 0.00 -0.06 4.04 29.85 0.12 0.06 16 16 C -0.55 -32.24 9.66 25.60 0.25 -31.99 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 18 C 0.00 0.17 5.47 84.66 0.46 0.63 16 19 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 20 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 24 H 0.06 1.55 7.01 -2.39 -0.02 1.54 16 25 H 0.06 1.36 7.94 -2.39 -0.02 1.34 16 26 H 0.04 1.00 3.36 -2.39 -0.01 0.99 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.96 3.84 -2.39 -0.01 0.95 16 31 H 0.06 0.93 8.11 -2.38 -0.02 0.91 16 32 H 0.09 0.89 6.76 -2.39 -0.02 0.88 16 33 H 0.11 0.81 5.78 -2.38 -0.01 0.80 16 34 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.16 3.72 7.82 -2.39 -0.02 3.70 16 38 H 0.15 4.04 4.55 -2.39 -0.01 4.03 16 39 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 42 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 43 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -78.99 332.65 0.88 -78.11 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.93 Total: 13.39 kcal Atomic # 6 Polarization: -60.62 SS G_CDS: 3.90 Total: -56.72 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -1.46 Total: -84.25 kcal Atomic # 8 Polarization: -73.15 SS G_CDS: -4.09 Total: -77.25 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Atomic # 16 Polarization: 81.60 SS G_CDS: -0.29 Total: 81.31 kcal Total: -78.99 0.88 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309956983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.001 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds