Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47468 * 2 1 4 4 C 1.50704 * 115.54948 * 304.82442 * 3 2 1 5 5 O 1.21279 * 120.00407 * 124.87791 * 4 3 2 6 6 N 1.34785 * 119.99501 * 304.88461 * 4 3 2 7 7 C 1.46502 * 119.99632 * 174.87510 * 6 4 3 8 8 C 1.50694 * 109.46867 * 179.97438 * 7 6 4 9 9 C 1.38324 * 119.97160 * 269.72457 * 8 7 6 10 10 C 1.38272 * 120.14189 * 179.77115 * 9 8 7 11 11 C 1.38122 * 120.06892 * 0.50616 * 10 9 8 12 12 C 1.38861 * 119.92806 * 359.74844 * 11 10 9 13 13 O 1.35750 * 120.06722 * 179.97438 * 12 11 10 14 14 C 1.34838 * 117.00105 * 5.73608 * 13 12 11 15 15 H 1.07994 * 119.99841 * 5.42466 * 14 13 12 16 16 C 1.38652 * 119.99780 * 185.42189 * 14 13 12 17 17 N 1.31559 * 120.00568 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99719 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46895 * 90.00236 * 18 16 14 20 20 H 1.48504 * 109.47248 * 209.99947 * 18 16 14 21 21 H 1.48497 * 109.47310 * 330.00452 * 18 16 14 22 22 C 1.38086 * 119.96433 * 90.00094 * 8 7 6 23 23 C 1.52998 * 117.49724 * 90.48723 * 3 2 1 24 24 C 1.52999 * 117.50079 * 159.15120 * 3 2 1 25 25 H 1.08995 * 109.47115 * 175.04406 * 1 2 3 26 26 H 1.09001 * 109.47238 * 295.04778 * 1 2 3 27 27 H 1.09002 * 109.46655 * 55.04734 * 1 2 3 28 28 H 1.09004 * 109.46793 * 239.99592 * 2 1 3 29 29 H 1.09003 * 109.47039 * 120.00212 * 2 1 3 30 30 H 0.96999 * 120.00234 * 355.14691 * 6 4 3 31 31 H 1.08997 * 109.47009 * 299.99548 * 7 6 4 32 32 H 1.08998 * 109.46766 * 59.99467 * 7 6 4 33 33 H 1.08003 * 119.92413 * 359.97438 * 9 8 7 34 34 H 1.08000 * 119.96848 * 180.25964 * 10 9 8 35 35 H 1.08005 * 120.04126 * 179.77443 * 11 10 9 36 36 H 0.97000 * 120.00241 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.03188 * 359.95597 * 22 8 7 38 38 H 1.09001 * 117.49539 * 215.00162 * 23 3 2 39 39 H 1.08996 * 117.49885 * 0.03066 * 23 3 2 40 40 H 1.08993 * 117.49648 * 359.97438 * 24 3 2 41 41 H 1.08995 * 117.49482 * 144.97249 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5248 2.3141 -1.1162 5 8 0.9706 3.3622 -0.8607 6 7 1.6796 1.9287 -2.3984 7 6 1.0813 2.7181 -3.4778 8 6 1.4001 2.0781 -4.8043 9 6 2.5439 2.4437 -5.4909 10 6 2.8423 1.8553 -6.7060 11 6 1.9931 0.9076 -7.2431 12 6 0.8414 0.5421 -6.5589 13 8 0.0045 -0.3887 -7.0844 14 6 0.4072 -1.0061 -8.2135 15 1 1.3937 -0.8167 -8.6100 16 6 -0.4453 -1.8840 -8.8653 17 7 -1.6473 -2.1144 -8.3825 18 14 0.1122 -2.7388 -10.4298 19 1 0.7696 -4.0247 -10.0840 20 1 -1.0646 -3.0019 -11.2966 21 1 1.0750 -1.8695 -11.1527 22 6 0.5471 1.1312 -5.3360 23 6 2.2865 2.1046 1.3571 24 6 3.4713 1.6857 0.4830 25 1 -0.3633 -1.0238 -0.0888 26 1 -0.3634 0.4351 0.9310 27 1 -0.3633 0.5888 -0.8423 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.1838 1.1266 -2.6063 31 1 0.0003 2.7570 -3.3433 32 1 1.4868 3.7296 -3.4559 33 1 3.2069 3.1881 -5.0753 34 1 3.7383 2.1399 -7.2377 35 1 2.2248 0.4509 -8.1940 36 1 -2.2435 -2.7289 -8.8383 37 1 -0.3477 0.8488 -4.8013 38 1 2.0760 3.1707 1.4425 39 1 2.0857 1.5124 2.2499 40 1 4.0493 0.8182 0.8011 41 1 4.0403 2.4758 -0.0069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323547409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -27.989874 kcal Electronic energy + Delta-G solvation = -22194.297217 eV Core-core repulsion = 18847.239003 eV Total energy + Delta-G solvation = -3347.058214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25625 -39.13125 -37.25412 -36.58972 -34.51667 -32.36228 -32.10218 -30.77831 -29.16948 -26.43163 -25.30633 -24.18587 -22.80369 -22.40518 -21.71676 -20.82471 -19.47750 -17.79757 -17.17539 -16.68124 -15.95870 -15.65135 -15.19612 -14.81486 -14.74202 -14.38106 -14.10956 -13.95448 -13.65423 -13.48667 -13.13330 -12.72953 -12.50449 -12.42136 -12.14500 -11.84569 -11.69110 -11.64838 -11.43104 -11.34936 -10.94463 -10.85599 -10.72033 -10.57510 -10.49580 -10.17770 -9.76791 -9.46038 -8.97386 -8.90524 -8.26005 -7.35043 -6.51191 -4.10798 1.88202 2.24931 2.57441 3.08051 3.09610 3.14450 3.30462 3.57402 3.90877 4.37258 4.46682 4.60509 4.67239 4.79739 4.94012 5.04066 5.17321 5.24594 5.29866 5.38084 5.42847 5.52526 5.65284 5.72198 5.76257 5.82850 5.83843 5.90378 5.92659 5.95526 6.06550 6.17849 6.23287 6.49414 6.53540 6.79615 6.98003 7.16523 7.24971 7.33181 7.58921 7.69842 7.92799 8.26996 8.94145 9.62733 10.66522 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022000 B = 0.003320 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.403337 B = 8431.737101 C = 9082.142375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 C -0.159 4.159 4 C 0.550 3.450 5 O -0.544 6.544 6 N -0.715 5.715 7 C 0.167 3.833 8 C -0.072 4.072 9 C -0.195 4.195 10 C -0.076 4.076 11 C -0.225 4.225 12 C 0.150 3.850 13 O -0.176 6.176 14 C -0.393 4.393 15 H 0.092 0.908 16 C 0.040 3.960 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.171 4.171 23 C -0.145 4.145 24 C -0.158 4.158 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.404 0.596 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.271 0.729 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.136 4.139 13.421 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C -0.162 4.162 4 C 0.336 3.664 5 O -0.422 6.422 6 N -0.366 5.366 7 C 0.045 3.955 8 C -0.073 4.073 9 C -0.215 4.215 10 C -0.094 4.094 11 C -0.245 4.245 12 C 0.097 3.903 13 O -0.079 6.079 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.164 4.164 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.198 1.198 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.191 4.191 23 C -0.182 4.182 24 C -0.196 4.196 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.239 0.761 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.263 4.665 13.587 16.572 hybrid contribution 0.532 -0.821 -1.120 1.487 sum 8.795 3.844 12.467 15.734 Atomic orbital electron populations 1.21751 0.94915 1.02046 1.02305 1.21046 0.96568 0.91447 1.02785 1.21571 1.01229 0.97296 0.96141 1.19465 0.78668 0.85311 0.82928 1.90680 1.43476 1.24129 1.83912 1.46063 1.55335 1.29880 1.05281 1.20162 0.98350 0.94140 0.82869 1.19257 0.95556 0.97455 0.95045 1.20474 0.98766 1.04730 0.97482 1.20745 0.98051 0.95544 0.95085 1.21251 0.97431 1.03195 1.02610 1.19330 0.89921 0.88887 0.92202 1.83998 1.40676 1.44301 1.38957 1.21315 1.00999 1.23275 1.01360 0.89072 1.25296 0.94962 0.97054 0.99130 1.70035 1.06652 1.33753 1.39060 0.85713 0.78364 0.79463 0.79904 1.19835 1.20209 1.19177 1.20075 1.01929 1.01252 0.95846 1.23003 1.00746 1.02012 0.92435 1.23069 0.89663 1.03709 1.03126 0.92122 0.92548 0.92476 0.90934 0.90972 0.76132 0.90948 0.90950 0.87539 0.87284 0.85453 0.91930 0.86422 0.87777 0.88060 0.87836 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.76 37.16 0.36 -1.25 16 2 C -0.08 -0.76 5.85 -26.73 -0.16 -0.92 16 3 C -0.16 -1.69 2.04 -155.66 -0.32 -2.01 16 4 C 0.55 7.64 6.02 -10.98 -0.07 7.57 16 5 O -0.54 -9.44 16.47 5.56 0.09 -9.35 16 6 N -0.71 -9.53 5.51 -61.47 -0.34 -9.87 16 7 C 0.17 2.48 5.80 -5.20 -0.03 2.45 16 8 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 9 C -0.20 -3.18 9.70 -39.54 -0.38 -3.56 16 10 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 11 C -0.23 -4.68 9.13 -39.39 -0.36 -5.04 16 12 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 13 O -0.18 -4.88 9.76 0.02 0.00 -4.88 16 14 C -0.39 -10.70 9.44 30.89 0.29 -10.40 16 15 H 0.09 2.28 5.29 -52.49 -0.28 2.01 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -24.76 13.67 55.48 0.76 -24.00 16 18 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.17 -3.43 9.65 -39.40 -0.38 -3.81 16 23 C -0.14 -1.36 9.73 -26.69 -0.26 -1.62 16 24 C -0.16 -1.36 9.96 -26.69 -0.27 -1.63 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.72 7.25 -51.93 -0.38 0.34 16 28 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.40 4.91 8.44 -40.82 -0.34 4.56 16 31 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.66 5.71 -52.48 -0.30 2.36 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.10 1.11 7.82 -51.93 -0.41 0.71 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -30.99 350.88 -7.99 -38.99 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.90 Total: 8.31 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -2.87 Total: -19.49 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.42 Total: -33.87 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.99 -7.99 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323547409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.998 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds