Wall clock time and date at job start Tue Mar 31 2020 07:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47157 * 2 1 4 4 C 1.50699 * 119.99993 * 274.99825 * 3 2 1 5 5 C 1.32989 * 120.00333 * 95.00189 * 3 2 1 6 6 C 1.47096 * 120.00364 * 173.17183 * 5 3 2 7 7 O 1.21618 * 120.00343 * 353.80898 * 6 5 3 8 8 N 1.34776 * 120.00210 * 173.80722 * 6 5 3 9 9 C 1.46501 * 120.00075 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.46958 * 179.97438 * 9 8 6 11 11 C 1.38319 * 119.96722 * 270.02041 * 10 9 8 12 12 C 1.38273 * 120.13754 * 179.97438 * 11 10 9 13 13 C 1.38121 * 120.07130 * 359.76741 * 12 11 10 14 14 C 1.38859 * 119.92881 * 0.51359 * 13 12 11 15 15 O 1.35756 * 120.07002 * 179.74565 * 14 13 12 16 16 C 1.34831 * 116.99832 * 358.18686 * 15 14 13 17 17 H 1.07998 * 119.99844 * 4.96829 * 16 15 14 18 18 C 1.38655 * 119.99727 * 184.97151 * 16 15 14 19 19 N 1.31561 * 119.99934 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00163 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47058 * 89.99997 * 20 18 16 22 22 H 1.48497 * 109.46764 * 210.00049 * 20 18 16 23 23 H 1.48496 * 109.46959 * 329.99881 * 20 18 16 24 24 C 1.38085 * 119.96072 * 90.00424 * 10 9 8 25 25 H 1.08998 * 109.47056 * 59.99973 * 1 2 3 26 26 H 1.08993 * 109.47463 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47095 * 300.00290 * 1 2 3 28 28 H 1.09003 * 109.46591 * 239.99866 * 2 1 3 29 29 H 1.08998 * 109.47056 * 120.00027 * 2 1 3 30 30 H 1.09004 * 109.47188 * 263.62912 * 4 3 2 31 31 H 1.08994 * 109.47348 * 23.62911 * 4 3 2 32 32 H 1.09003 * 109.47337 * 143.62912 * 4 3 2 33 33 H 1.08007 * 119.99901 * 353.17415 * 5 3 2 34 34 H 0.97008 * 120.00190 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47524 * 60.00464 * 9 8 6 36 36 H 1.09001 * 109.47266 * 300.00050 * 9 8 6 37 37 H 1.07997 * 119.93139 * 359.97438 * 11 10 9 38 38 H 1.08007 * 119.96602 * 180.02562 * 12 11 10 39 39 H 1.08006 * 120.03904 * 180.26986 * 13 12 11 40 40 H 0.96991 * 119.99806 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.03990 * 0.03549 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.1763 2.1690 -1.3001 5 6 2.3487 2.0143 1.1473 6 6 2.9790 3.3433 1.1386 7 8 3.3137 3.8508 0.0853 8 7 3.1857 3.9987 2.2980 9 6 3.8130 5.3226 2.2892 10 6 3.9278 5.8334 3.7025 11 6 2.9007 6.5781 4.2536 12 6 3.0022 7.0480 5.5500 13 6 4.1281 6.7709 6.3005 14 6 5.1635 6.0285 5.7482 15 8 6.2736 5.7589 6.4815 16 6 6.3243 6.2729 7.7269 17 1 5.4719 6.8007 8.1283 18 6 7.4709 6.1240 8.4922 19 7 7.5202 6.6251 9.7076 20 14 8.9456 5.2118 7.7975 21 1 9.8367 6.1717 7.0977 22 1 9.6913 4.5608 8.9045 23 1 8.4811 4.1778 6.8383 24 6 5.0582 5.5572 4.4458 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2079 2.1018 -1.6458 31 1 1.5137 1.7312 -2.0466 32 1 1.9115 3.2155 -1.1484 33 1 2.1428 1.5204 2.0855 34 1 2.9191 3.5939 3.1383 35 1 3.2028 6.0100 1.7034 36 1 4.8064 5.2511 1.8465 37 1 2.0177 6.7929 3.6701 38 1 2.1983 7.6289 5.9778 39 1 4.2049 7.1345 7.3146 40 1 8.3224 6.5213 10.2428 41 1 5.8600 4.9759 4.0149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325110583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:10 Heat of formation + Delta-G solvation = -35.512281 kcal Electronic energy + Delta-G solvation = -21578.419633 eV Core-core repulsion = 18231.035222 eV Total energy + Delta-G solvation = -3347.384410 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93740 -39.21623 -37.14756 -36.32607 -34.50368 -32.45557 -31.36700 -30.80470 -29.45678 -27.99764 -25.91664 -25.13940 -24.09397 -21.86846 -21.05481 -20.70051 -18.90479 -17.79285 -17.32118 -16.87168 -15.77877 -15.49128 -15.21596 -14.83196 -14.78691 -14.54212 -14.15312 -13.89032 -13.72807 -13.37731 -13.31269 -12.82627 -12.69938 -12.57830 -12.39180 -12.19636 -12.03044 -11.80556 -11.67544 -11.46021 -11.22433 -10.94823 -10.87414 -10.78309 -10.21612 -9.66080 -9.47401 -9.36574 -8.94326 -8.86955 -8.33631 -7.49031 -6.47662 -4.15029 1.24512 1.81262 2.14508 3.17993 3.22420 3.27870 3.36381 3.42315 4.18669 4.37573 4.49408 4.57524 4.65505 4.90698 4.94865 5.01140 5.03920 5.16195 5.24979 5.41064 5.42246 5.54445 5.58077 5.63688 5.67262 5.74499 5.82616 5.84911 5.93302 6.00775 6.14331 6.33520 6.37234 6.41793 6.50971 6.66881 6.99044 7.10602 7.19586 7.47922 7.61868 7.71956 7.96297 8.28581 8.87254 9.48307 10.59744 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021374 B = 0.002887 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.658530 B = 9696.716454 C =10230.887366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.032 4.032 4 C -0.123 4.123 5 C -0.230 4.230 6 C 0.542 3.458 7 O -0.547 6.547 8 N -0.719 5.719 9 C 0.168 3.832 10 C -0.075 4.075 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.213 4.213 14 C 0.156 3.844 15 O -0.215 6.215 16 C -0.392 4.392 17 H 0.107 0.893 18 C 0.064 3.936 19 N -0.878 5.878 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.172 4.172 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.280 0.720 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 -9.856 -16.154 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.034 4.034 4 C -0.179 4.179 5 C -0.251 4.251 6 C 0.332 3.668 7 O -0.428 6.428 8 N -0.369 5.369 9 C 0.046 3.954 10 C -0.075 4.075 11 C -0.206 4.206 12 C -0.095 4.095 13 C -0.233 4.233 14 C 0.104 3.896 15 O -0.120 6.120 16 C -0.467 4.467 17 H 0.124 0.876 18 C -0.139 4.139 19 N -0.515 5.515 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.192 4.192 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.701 -9.572 -16.724 22.543 hybrid contribution 0.528 -0.382 0.662 0.929 sum -11.172 -9.954 -16.061 21.951 Atomic orbital electron populations 1.21725 0.94255 1.02026 1.02467 1.20770 0.96652 0.92701 1.03354 1.22525 0.90627 0.94754 0.95465 1.21120 1.02284 1.01196 0.93254 1.22408 1.07241 0.96485 0.98952 1.18562 0.79118 0.85531 0.83553 1.90748 1.52163 1.69282 1.30582 1.46048 1.62338 1.19393 1.09138 1.20127 0.98443 0.83234 0.93644 1.19283 0.94542 0.99429 0.94269 1.20547 0.99145 1.04593 0.96339 1.20805 0.96863 0.98028 0.93846 1.21369 0.94995 1.04848 1.02064 1.19065 0.87138 0.92893 0.90494 1.83583 1.35306 1.66078 1.27046 1.20764 1.03384 1.35940 0.86604 0.87573 1.24472 0.98123 0.96583 0.94751 1.69642 1.29879 1.43390 1.08596 0.86180 0.81264 0.80562 0.78905 1.19825 1.20725 1.18349 1.20077 0.99440 1.06812 0.92824 0.92364 0.92150 0.92311 0.90387 0.90640 0.90353 0.92895 0.89275 0.85671 0.76234 0.90941 0.90926 0.87309 0.86975 0.84802 0.90963 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.52 16 2 C -0.10 -0.66 6.08 -27.89 -0.17 -0.83 16 3 C -0.03 -0.30 5.36 -101.17 -0.54 -0.84 16 4 C -0.12 -1.22 8.47 36.00 0.30 -0.92 16 5 C -0.23 -2.39 9.60 -37.81 -0.36 -2.76 16 6 C 0.54 7.19 7.62 -12.67 -0.10 7.09 16 7 O -0.55 -8.70 13.28 5.26 0.07 -8.63 16 8 N -0.72 -9.14 5.54 -62.67 -0.35 -9.49 16 9 C 0.17 2.36 5.80 -5.19 -0.03 2.33 16 10 C -0.07 -1.20 5.25 -104.64 -0.55 -1.74 16 11 C -0.19 -2.93 9.70 -39.54 -0.38 -3.31 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.21 -4.40 9.17 -39.39 -0.36 -4.76 16 14 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 15 O -0.22 -5.53 8.59 0.03 0.00 -5.53 16 16 C -0.39 -10.78 9.94 30.89 0.31 -10.48 16 17 H 0.11 2.98 5.43 -52.49 -0.28 2.69 16 18 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 19 N -0.88 -24.95 13.96 55.48 0.77 -24.17 16 20 Si 0.91 21.37 28.62 -169.99 -4.86 16.50 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.17 -3.25 9.65 -39.39 -0.38 -3.63 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.47 8.03 -51.93 -0.42 0.06 16 30 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 31 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.09 1.07 6.18 -51.93 -0.32 0.75 16 33 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.40 4.57 8.45 -40.82 -0.34 4.22 16 35 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 39 H 0.13 2.91 5.62 -52.48 -0.29 2.62 16 40 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -29.96 349.09 -7.61 -37.57 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.86 Total: 5.68 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.65 Total: -17.19 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.43 Total: -33.67 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.86 Total: 16.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.96 -7.61 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325110583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.062 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds