Wall clock time and date at job start Tue Mar 31 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47373 * 2 1 4 4 C 1.50696 * 109.47039 * 119.99987 * 2 1 3 5 5 C 1.38385 * 119.93016 * 300.02422 * 4 2 1 6 6 C 1.38334 * 120.29472 * 179.97438 * 5 4 2 7 7 C 1.37985 * 120.14581 * 359.78323 * 6 5 4 8 8 C 1.39557 * 119.85025 * 0.44713 * 7 6 5 9 9 C 1.47845 * 120.14544 * 179.80749 * 8 7 6 10 10 O 1.21553 * 119.99549 * 352.84938 * 9 8 7 11 11 N 1.34772 * 120.00294 * 172.84501 * 9 8 7 12 12 C 1.47575 * 134.49695 * 174.44521 * 11 9 8 13 13 C 1.53943 * 86.12164 * 155.35856 * 12 11 9 14 14 O 1.42903 * 113.74233 * 269.15771 * 13 12 11 15 15 C 1.50699 * 113.74281 * 137.95557 * 13 12 11 16 16 H 1.07998 * 119.99662 * 1.91899 * 15 13 12 17 17 C 1.37874 * 120.00037 * 181.92910 * 15 13 12 18 18 N 1.31519 * 119.99925 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00126 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47321 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47465 * 299.99696 * 19 17 15 22 22 H 1.48499 * 109.47030 * 59.99828 * 19 17 15 23 23 C 1.47813 * 134.45554 * 354.31369 * 11 9 8 24 24 C 1.37937 * 119.92812 * 120.00094 * 4 2 1 25 25 H 1.08995 * 109.46938 * 300.00178 * 1 2 3 26 26 H 1.09007 * 109.46776 * 60.00053 * 1 2 3 27 27 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47306 * 239.99896 * 2 1 3 29 29 H 1.09000 * 109.47519 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47232 * 300.00320 * 3 2 1 31 31 H 1.09002 * 109.46989 * 59.99702 * 3 2 1 32 32 H 1.08002 * 119.84709 * 359.97438 * 5 4 2 33 33 H 1.07994 * 119.92788 * 180.02562 * 6 5 4 34 34 H 1.07992 * 120.07341 * 180.23218 * 7 6 5 35 35 H 1.09005 * 113.76954 * 41.05559 * 12 11 9 36 36 H 1.08995 * 113.87411 * 269.67502 * 12 11 9 37 37 H 0.96694 * 114.00011 * 178.07487 * 14 13 12 38 38 H 0.97000 * 120.00238 * 179.97438 * 18 17 15 39 39 H 1.08998 * 113.77414 * 90.37912 * 23 11 9 40 40 H 1.09009 * 113.83454 * 318.91506 * 23 11 9 41 41 H 1.08007 * 120.07309 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6967 -0.2366 2.4866 6 6 2.1532 -0.8832 3.6212 7 6 2.9434 -2.0086 3.5068 8 6 3.2895 -2.4888 2.2430 9 6 4.1394 -3.6916 2.1129 10 8 4.6448 -4.1882 3.1006 11 7 4.3536 -4.2374 0.8994 12 6 5.1992 -5.3362 0.3942 13 6 4.1872 -5.4442 -0.7607 14 8 3.1183 -6.3577 -0.5055 15 6 4.8260 -5.6497 -2.1100 16 1 5.8992 -5.7388 -2.1914 17 6 4.0403 -5.7239 -3.2406 18 7 2.7334 -5.6157 -3.1414 19 14 4.8322 -5.9779 -4.9133 20 1 3.7782 -6.0228 -5.9583 21 1 5.7627 -4.8557 -5.1961 22 1 5.5853 -7.2577 -4.9151 23 6 3.8335 -3.9766 -0.4594 24 6 2.8252 -1.8318 1.1022 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.0756 0.6418 2.5815 33 1 1.8873 -0.5086 4.5985 34 1 3.2960 -2.5146 4.3933 35 1 5.2184 -6.2106 1.0448 36 1 6.1932 -5.0188 0.0791 37 1 2.4645 -6.4066 -1.2163 38 1 2.1806 -5.6674 -3.9369 39 1 4.4248 -3.2570 -1.0256 40 1 2.7641 -3.7674 -0.4891 41 1 3.0859 -2.2010 0.1212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331166626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:37 Heat of formation + Delta-G solvation = -31.914675 kcal Electronic energy + Delta-G solvation = -23191.566658 eV Core-core repulsion = 19844.338252 eV Total energy + Delta-G solvation = -3347.228406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.11129 -38.83971 -37.26118 -35.16841 -34.00971 -32.24783 -31.28788 -29.69554 -28.42350 -27.19035 -25.53535 -25.49853 -23.45819 -22.63061 -20.87712 -19.62998 -18.35063 -17.44256 -16.58656 -16.40629 -15.60259 -15.30896 -14.84700 -14.69856 -14.37108 -14.18597 -13.69338 -13.58870 -13.48891 -13.18917 -12.65416 -12.43347 -12.36125 -12.13275 -11.97852 -11.85795 -11.61474 -11.58145 -11.17405 -11.07316 -11.04608 -10.79290 -10.63635 -10.50417 -10.31695 -9.65024 -9.25013 -8.81371 -8.78761 -8.62153 -8.39806 -7.84921 -6.41478 -4.52023 1.09811 1.49140 3.14722 3.20869 3.22825 3.26279 3.51510 4.12051 4.17417 4.61267 4.73646 4.82241 4.93051 5.09170 5.16124 5.22953 5.36520 5.49174 5.53713 5.55362 5.58346 5.75074 5.77350 5.89794 5.92825 5.95376 6.13175 6.16156 6.18196 6.20286 6.32800 6.42309 6.48782 6.52001 6.61223 6.67477 6.73130 7.03823 7.07304 7.60428 7.79348 8.43164 8.51088 8.74058 9.19170 9.40598 10.65183 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.005239 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.340972 B = 5342.863058 C = 6671.533438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.087 4.087 5 C -0.098 4.098 6 C -0.131 4.131 7 C -0.071 4.071 8 C -0.117 4.117 9 C 0.569 3.431 10 O -0.562 6.562 11 N -0.626 5.626 12 C 0.112 3.888 13 C 0.240 3.760 14 O -0.571 6.571 15 C -0.538 4.538 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.072 3.928 24 C -0.093 4.093 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 12.384 4.217 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.116 4.116 6 C -0.149 4.149 7 C -0.090 4.090 8 C -0.120 4.120 9 C 0.359 3.641 10 O -0.444 6.444 11 N -0.358 5.358 12 C -0.010 4.010 13 C 0.198 3.802 14 O -0.383 6.383 15 C -0.576 4.576 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.210 1.210 21 H -0.199 1.199 22 H -0.198 1.198 23 C -0.050 4.050 24 C -0.111 4.111 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.580 12.098 5.340 13.700 hybrid contribution -0.012 0.091 -1.395 1.398 sum -3.593 12.188 3.944 13.305 Atomic orbital electron populations 1.21848 0.94288 1.02291 1.01605 1.20144 0.96031 0.95945 0.95600 1.21848 1.01318 0.95125 1.01671 1.19816 0.98200 0.95818 0.94833 1.21096 0.99111 0.99445 0.91991 1.21040 0.99145 0.96210 0.98550 1.21241 0.95651 0.95223 0.96863 1.20036 1.00829 0.96902 0.94228 1.17930 0.81038 0.82913 0.82211 1.90691 1.53316 1.63598 1.36774 1.50085 1.44178 1.35164 1.06410 1.23472 0.95270 0.88171 0.94044 1.19843 0.84852 0.84348 0.91121 1.86074 1.38962 1.63812 1.49456 1.21462 0.94297 1.51381 0.90491 0.91058 1.25060 0.94865 0.93109 0.99914 1.69394 1.03881 1.49571 1.30907 0.86399 0.78987 0.79148 0.82066 1.20997 1.19896 1.19837 1.24466 0.98987 1.03281 0.78267 1.21987 0.95418 0.94193 0.99498 0.92701 0.92371 0.92256 0.89959 0.92498 0.92376 0.92669 0.86118 0.85754 0.85070 0.90967 0.89438 0.75370 0.91607 0.89776 0.90710 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.01 37.16 0.33 -1.13 16 2 C -0.06 -0.67 3.09 -91.77 -0.28 -0.96 16 3 C -0.14 -1.37 9.01 37.16 0.33 -1.04 16 4 C -0.09 -1.17 4.78 -104.68 -0.50 -1.67 16 5 C -0.10 -1.19 8.71 -39.49 -0.34 -1.54 16 6 C -0.13 -1.67 10.03 -39.64 -0.40 -2.07 16 7 C -0.07 -1.12 9.59 -39.18 -0.38 -1.49 16 8 C -0.12 -2.13 5.87 -104.97 -0.62 -2.74 16 9 C 0.57 12.31 7.99 -12.33 -0.10 12.21 16 10 O -0.56 -13.54 17.10 5.32 0.09 -13.44 16 11 N -0.63 -13.56 3.60 -179.22 -0.64 -14.20 16 12 C 0.11 2.46 8.23 -2.97 -0.02 2.44 16 13 C 0.24 5.69 1.40 -90.85 -0.13 5.56 16 14 O -0.57 -14.65 13.48 -35.23 -0.48 -15.12 16 15 C -0.54 -13.22 8.61 -34.44 -0.30 -13.52 16 16 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.07 1.78 5.39 -17.82 -0.10 1.69 16 18 N -0.90 -22.18 11.20 55.43 0.62 -21.56 16 19 Si 0.91 19.08 29.54 -169.99 -5.02 14.06 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 C 0.07 1.53 5.61 -2.84 -0.02 1.51 16 24 C -0.09 -1.52 8.70 -39.18 -0.34 -1.86 16 25 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 32 H 0.12 1.15 7.08 -52.49 -0.37 0.78 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 2.05 7.67 -52.49 -0.40 1.64 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 37 H 0.39 10.05 6.60 45.56 0.30 10.35 16 38 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 39 H 0.08 1.68 8.00 -51.93 -0.42 1.27 16 40 H 0.07 1.58 6.90 -51.92 -0.36 1.23 16 41 H 0.14 2.42 3.98 -52.48 -0.21 2.21 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -28.14 338.09 -8.32 -36.46 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -5.13 Total: 13.32 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.85 Total: -4.59 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.02 Total: -35.77 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.38 Total: -28.57 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.14 -8.32 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331166626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.544 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds