Wall clock time and date at job start Tue Mar 31 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47373 * 2 1 4 4 C 1.50696 * 109.47039 * 119.99987 * 2 1 3 5 5 C 1.38385 * 119.93016 * 300.02422 * 4 2 1 6 6 C 1.38334 * 120.29472 * 179.97438 * 5 4 2 7 7 C 1.37985 * 120.14581 * 359.78323 * 6 5 4 8 8 C 1.39557 * 119.85025 * 0.44713 * 7 6 5 9 9 C 1.47845 * 120.14544 * 179.80749 * 8 7 6 10 10 O 1.21553 * 119.99549 * 352.84938 * 9 8 7 11 11 N 1.34772 * 120.00294 * 172.84501 * 9 8 7 12 12 C 1.47575 * 134.49695 * 174.44521 * 11 9 8 13 13 C 1.53943 * 86.12164 * 155.35856 * 12 11 9 14 14 O 1.42903 * 113.74233 * 269.15771 * 13 12 11 15 15 C 1.50699 * 113.74281 * 137.95557 * 13 12 11 16 16 H 1.07998 * 119.99662 * 1.91899 * 15 13 12 17 17 C 1.37874 * 120.00037 * 181.92910 * 15 13 12 18 18 N 1.31519 * 119.99925 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00126 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47321 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47465 * 299.99696 * 19 17 15 22 22 H 1.48499 * 109.47030 * 59.99828 * 19 17 15 23 23 C 1.47813 * 134.45554 * 354.31369 * 11 9 8 24 24 C 1.37937 * 119.92812 * 120.00094 * 4 2 1 25 25 H 1.08995 * 109.46938 * 300.00178 * 1 2 3 26 26 H 1.09007 * 109.46776 * 60.00053 * 1 2 3 27 27 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47306 * 239.99896 * 2 1 3 29 29 H 1.09000 * 109.47519 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47232 * 300.00320 * 3 2 1 31 31 H 1.09002 * 109.46989 * 59.99702 * 3 2 1 32 32 H 1.08002 * 119.84709 * 359.97438 * 5 4 2 33 33 H 1.07994 * 119.92788 * 180.02562 * 6 5 4 34 34 H 1.07992 * 120.07341 * 180.23218 * 7 6 5 35 35 H 1.09005 * 113.76954 * 41.05559 * 12 11 9 36 36 H 1.08995 * 113.87411 * 269.67502 * 12 11 9 37 37 H 0.96694 * 114.00011 * 178.07487 * 14 13 12 38 38 H 0.97000 * 120.00238 * 179.97438 * 18 17 15 39 39 H 1.08998 * 113.77414 * 90.37912 * 23 11 9 40 40 H 1.09009 * 113.83454 * 318.91506 * 23 11 9 41 41 H 1.08007 * 120.07309 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6967 -0.2366 2.4866 6 6 2.1532 -0.8832 3.6212 7 6 2.9434 -2.0086 3.5068 8 6 3.2895 -2.4888 2.2430 9 6 4.1394 -3.6916 2.1129 10 8 4.6448 -4.1882 3.1006 11 7 4.3536 -4.2374 0.8994 12 6 5.1992 -5.3362 0.3942 13 6 4.1872 -5.4442 -0.7607 14 8 3.1183 -6.3577 -0.5055 15 6 4.8260 -5.6497 -2.1100 16 1 5.8992 -5.7388 -2.1914 17 6 4.0403 -5.7239 -3.2406 18 7 2.7334 -5.6157 -3.1414 19 14 4.8322 -5.9779 -4.9133 20 1 3.7782 -6.0228 -5.9583 21 1 5.7627 -4.8557 -5.1961 22 1 5.5853 -7.2577 -4.9151 23 6 3.8335 -3.9766 -0.4594 24 6 2.8252 -1.8318 1.1022 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.0756 0.6418 2.5815 33 1 1.8873 -0.5086 4.5985 34 1 3.2960 -2.5146 4.3933 35 1 5.2184 -6.2106 1.0448 36 1 6.1932 -5.0188 0.0791 37 1 2.4645 -6.4066 -1.2163 38 1 2.1806 -5.6674 -3.9369 39 1 4.4248 -3.2570 -1.0256 40 1 2.7641 -3.7674 -0.4891 41 1 3.0859 -2.2010 0.1212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331166626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:32 Heat of formation + Delta-G solvation = -48.951069 kcal Electronic energy + Delta-G solvation = -23192.305412 eV Core-core repulsion = 19844.338252 eV Total energy + Delta-G solvation = -3347.967160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.62441 -40.21854 -38.95580 -36.17557 -35.90361 -34.17148 -32.57217 -30.78668 -30.11896 -27.94169 -27.30361 -27.24205 -24.71462 -23.75267 -22.24072 -21.18523 -19.86888 -19.25204 -18.01503 -17.89411 -17.07154 -16.82411 -16.40928 -16.26458 -15.87959 -15.47103 -15.05710 -14.71206 -14.66243 -14.49599 -14.27221 -13.96592 -13.84844 -13.44206 -13.26407 -13.02646 -12.97737 -12.86026 -12.76495 -12.57934 -12.24371 -12.23278 -12.01860 -11.77807 -11.55974 -11.37052 -11.02425 -10.66081 -10.25353 -10.01411 -9.76745 -9.56327 -8.27273 -6.44736 -0.14902 0.37224 1.48140 1.50428 1.57508 1.80393 1.85768 2.40444 2.83960 2.95010 3.35039 3.62092 3.74136 3.88886 4.01015 4.15297 4.20561 4.33851 4.34673 4.40247 4.47620 4.50734 4.55582 4.65988 4.76002 4.80497 4.85764 4.87289 5.02349 5.04752 5.05062 5.18405 5.22141 5.29055 5.42074 5.43472 5.45451 5.63330 5.71042 5.90270 5.94963 6.60645 6.72218 7.04134 7.28442 7.41320 8.78886 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.005239 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.340972 B = 5342.863058 C = 6671.533438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.138 4.138 4 C -0.085 4.085 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.083 4.083 8 C -0.147 4.147 9 C 0.560 3.440 10 O -0.598 6.598 11 N -0.630 5.630 12 C 0.110 3.890 13 C 0.221 3.779 14 O -0.587 6.587 15 C -0.558 4.558 16 H 0.073 0.927 17 C 0.036 3.964 18 N -0.915 5.915 19 Si 0.968 3.032 20 H -0.282 1.282 21 H -0.267 1.267 22 H -0.276 1.276 23 C 0.093 3.907 24 C -0.107 4.107 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.125 0.875 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.388 0.612 38 H 0.276 0.724 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 15.095 4.006 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.196 4.196 4 C -0.085 4.085 5 C -0.101 4.101 6 C -0.136 4.136 7 C -0.102 4.102 8 C -0.150 4.150 9 C 0.353 3.647 10 O -0.482 6.482 11 N -0.362 5.362 12 C -0.012 4.012 13 C 0.180 3.820 14 O -0.399 6.399 15 C -0.596 4.596 16 H 0.091 0.909 17 C -0.165 4.165 18 N -0.555 5.555 19 Si 0.793 3.207 20 H -0.207 1.207 21 H -0.192 1.192 22 H -0.201 1.201 23 C -0.029 4.029 24 C -0.125 4.125 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.143 0.857 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.600 14.819 5.125 16.341 hybrid contribution 0.252 -0.720 -1.290 1.499 sum -4.348 14.099 3.834 15.244 Atomic orbital electron populations 1.21841 0.93030 1.01683 1.03223 1.20198 0.96983 0.96799 0.93903 1.21829 1.00754 0.93765 1.03212 1.20109 0.97003 0.94719 0.96685 1.21548 0.97940 0.99835 0.90825 1.21438 0.97109 0.94403 1.00662 1.21361 0.96690 0.96590 0.95595 1.19901 1.02501 0.96539 0.96062 1.18618 0.80957 0.83677 0.81461 1.90646 1.54916 1.65002 1.37611 1.50129 1.44181 1.35077 1.06796 1.23516 0.96018 0.88268 0.93371 1.20122 0.84854 0.85352 0.91654 1.86060 1.39478 1.64805 1.49512 1.21665 0.94573 1.52218 0.91110 0.90861 1.25732 0.95297 0.92666 1.02841 1.69461 1.04722 1.49568 1.31738 0.85445 0.78140 0.78896 0.78191 1.20705 1.19165 1.20098 1.24238 0.98856 1.01817 0.77980 1.21912 0.96798 0.95579 0.98256 0.90887 0.91007 0.93971 0.91549 0.93411 0.91030 0.90978 0.82181 0.81935 0.85713 0.92190 0.87502 0.75797 0.91381 0.88695 0.91166 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.01 71.98 0.65 -1.82 16 2 C -0.06 -1.25 3.09 -11.54 -0.04 -1.28 16 3 C -0.14 -2.22 9.01 71.98 0.65 -1.57 16 4 C -0.09 -2.14 4.78 -19.90 -0.10 -2.24 16 5 C -0.08 -1.71 8.71 22.33 0.19 -1.51 16 6 C -0.12 -2.62 10.03 22.23 0.22 -2.40 16 7 C -0.08 -2.58 9.59 22.53 0.22 -2.36 16 8 C -0.15 -5.44 5.87 -20.09 -0.12 -5.56 16 9 C 0.56 25.23 7.99 86.79 0.69 25.92 16 10 O -0.60 -30.01 17.10 -3.88 -0.07 -30.08 16 11 N -0.63 -28.29 3.60 -843.02 -3.03 -31.32 16 12 C 0.11 5.00 8.23 86.49 0.71 5.71 16 13 C 0.22 10.77 1.40 -10.88 -0.02 10.75 16 14 O -0.59 -31.15 13.48 -148.98 -2.01 -33.16 16 15 C -0.56 -27.66 8.61 25.60 0.22 -27.44 16 16 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 17 C 0.04 1.73 5.39 84.65 0.46 2.19 16 18 N -0.91 -45.48 11.20 21.45 0.24 -45.24 16 19 Si 0.97 38.78 29.54 68.60 2.03 40.81 16 20 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 22 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 23 C 0.09 4.05 5.61 86.44 0.48 4.54 16 24 C -0.11 -3.51 8.70 22.53 0.20 -3.32 16 25 H 0.07 1.01 7.38 -2.39 -0.02 0.99 16 26 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.57 7.87 -2.39 -0.02 1.56 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.92 7.38 -2.39 -0.02 0.90 16 32 H 0.16 2.07 7.08 -2.91 -0.02 2.05 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.12 3.93 7.67 -2.91 -0.02 3.91 16 35 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.11 4.34 8.09 -2.39 -0.02 4.32 16 37 H 0.39 20.60 6.60 -74.06 -0.49 20.12 16 38 H 0.28 13.03 8.31 -92.71 -0.77 12.26 16 39 H 0.10 3.87 8.00 -2.39 -0.02 3.85 16 40 H 0.07 3.09 6.90 -2.38 -0.02 3.07 16 41 H 0.13 4.50 3.98 -2.91 -0.01 4.49 16 Total: -1.00 -62.07 338.09 2.14 -59.92 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: 0.55 Total: 39.47 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 4.43 Total: -0.39 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -2.79 Total: -76.56 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -2.08 Total: -63.24 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -62.07 2.14 -59.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331166626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.972 kcal (2) G-P(sol) polarization free energy of solvation -62.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds