Wall clock time and date at job start Tue Mar 31 2020 07:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 212.17489 * 3 2 1 5 5 N 1.46903 * 109.47499 * 72.02998 * 4 3 2 6 6 C 1.46899 * 111.00096 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46977 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47137 * 59.99972 * 7 6 5 9 9 O 1.42894 * 109.46976 * 300.00053 * 7 6 5 10 10 C 1.52998 * 109.47151 * 179.97438 * 7 6 5 11 11 O 1.42897 * 109.46939 * 184.99933 * 10 7 6 12 12 C 1.35679 * 116.99986 * 180.02562 * 11 10 7 13 13 C 1.39310 * 119.82012 * 179.97438 * 12 11 10 14 14 C 1.36434 * 120.18388 * 179.72146 * 13 12 11 15 15 C 1.40833 * 119.81229 * 0.28410 * 14 13 12 16 16 C 1.41217 * 120.17634 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00063 * 204.54326 * 16 15 14 18 18 C 1.39888 * 120.00226 * 24.54833 * 16 15 14 19 19 N 1.30881 * 120.00110 * 17.92863 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.93362 * 18 16 15 21 21 H 1.48507 * 109.47341 * 89.99840 * 20 18 16 22 22 H 1.48504 * 109.47207 * 209.99555 * 20 18 16 23 23 H 1.48495 * 109.47455 * 329.99651 * 20 18 16 24 24 C 1.40829 * 119.64308 * 359.97438 * 15 14 13 25 25 C 1.36438 * 119.80864 * 0.02562 * 24 15 14 26 26 H 1.09004 * 109.47170 * 255.78974 * 1 2 3 27 27 H 1.08993 * 109.47395 * 15.79158 * 1 2 3 28 28 H 1.09001 * 109.46695 * 135.79756 * 1 2 3 29 29 H 1.09000 * 109.47425 * 312.03024 * 4 3 2 30 30 H 1.09003 * 109.47374 * 192.02915 * 4 3 2 31 31 H 1.00897 * 110.99475 * 56.04281 * 5 4 3 32 32 H 1.08989 * 109.47204 * 59.99997 * 6 5 4 33 33 H 1.08999 * 109.47236 * 299.99785 * 6 5 4 34 34 H 0.96695 * 114.00535 * 299.99800 * 9 7 6 35 35 H 1.09005 * 109.46881 * 65.00011 * 10 7 6 36 36 H 1.08998 * 109.47164 * 305.00000 * 10 7 6 37 37 H 1.08000 * 119.90685 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.09173 * 180.29736 * 14 13 12 39 39 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.09227 * 180.02562 * 24 15 14 41 41 H 1.08003 * 119.90520 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0017 0.0004 5 7 4.6084 -0.4251 -1.3170 6 6 6.0769 -0.4354 -1.3540 7 6 6.5490 -0.8835 -2.7387 8 1 6.1713 -0.1927 -3.4925 9 8 6.0565 -2.1977 -3.0076 10 6 8.0784 -0.8936 -2.7775 11 8 8.5192 -1.1989 -4.1021 12 6 9.8592 -1.2481 -4.3093 13 6 10.3536 -1.5412 -5.5783 14 6 11.6996 -1.5871 -5.7964 15 6 12.5899 -1.3431 -4.7328 16 6 13.9846 -1.3881 -4.9499 17 1 14.6526 -1.5979 -4.1276 18 6 14.5008 -1.1608 -6.2300 19 7 13.7642 -0.5724 -7.1378 20 14 16.2417 -1.6973 -6.6438 21 1 16.2200 -3.0860 -7.1695 22 1 16.8089 -0.7878 -7.6716 23 1 17.0802 -1.6446 -5.4193 24 6 12.0818 -1.0529 -3.4518 25 6 10.7330 -1.0108 -3.2506 26 1 -0.3634 -0.2523 0.9962 27 1 -0.3634 0.9888 -0.2796 28 1 -0.3633 -0.7367 -0.7165 29 1 4.4817 -0.6860 0.7638 30 1 4.4805 1.0072 0.2146 31 1 4.2325 0.1585 -2.0492 32 1 6.4545 -1.1259 -0.6000 33 1 6.4525 0.5671 -1.1493 34 1 6.3531 -2.8661 -2.3749 35 1 8.4544 -1.6482 -2.0865 36 1 8.4558 0.0865 -2.4858 37 1 9.6695 -1.7278 -6.3929 38 1 12.0813 -1.8097 -6.7818 39 1 14.1221 -0.4152 -8.0256 40 1 12.7580 -0.8641 -2.6310 41 1 10.3417 -0.7888 -2.2688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336770853.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:51 Heat of formation + Delta-G solvation = -24.964508 kcal Electronic energy + Delta-G solvation = -21069.465365 eV Core-core repulsion = 17722.538341 eV Total energy + Delta-G solvation = -3346.927024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.11922 -37.91115 -36.43495 -35.72675 -33.91648 -33.31634 -31.00024 -29.82547 -29.13892 -28.67370 -26.21054 -24.76203 -23.69767 -22.03904 -20.70358 -20.56782 -17.68310 -17.36014 -16.90922 -16.50685 -16.16721 -15.48774 -15.26141 -15.15083 -14.50372 -14.18765 -14.12432 -13.94845 -13.81250 -13.70126 -13.23534 -12.90348 -12.75771 -12.34437 -12.22937 -12.13525 -11.76575 -11.39230 -11.15462 -10.95432 -10.80014 -10.62975 -10.29730 -10.10042 -9.99205 -9.87470 -9.82531 -9.33398 -9.02823 -8.75985 -7.64693 -7.03650 -6.72445 -4.25933 2.30888 2.45064 2.77611 2.94718 3.08652 3.11863 3.21380 3.58678 3.94906 3.97049 4.26877 4.50352 4.61819 4.85629 4.89980 5.04589 5.08116 5.17727 5.22410 5.26080 5.27567 5.34058 5.41263 5.56928 5.61033 5.66825 6.00163 6.05275 6.22508 6.53918 6.72785 6.96233 6.97767 7.10882 7.18344 7.37662 7.46114 7.55395 7.76324 7.78834 8.00381 8.20243 8.44984 8.65138 8.89692 8.98451 10.21965 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.062810 B = 0.002091 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.684388 B =13389.483171 C =13608.210447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.179 4.179 3 C -0.187 4.187 4 C 0.173 3.827 5 N -0.676 5.676 6 C 0.029 3.971 7 C 0.115 3.885 8 H 0.103 0.897 9 O -0.540 6.540 10 C 0.039 3.961 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.087 3.913 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.799 5.799 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.198 4.198 25 C -0.169 4.169 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.348 0.652 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.372 0.628 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.280 0.720 40 H 0.094 0.906 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.759 1.736 11.341 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.181 4.181 3 C -0.187 4.187 4 C 0.045 3.955 5 N -0.307 5.307 6 C -0.100 4.100 7 C 0.055 3.945 8 H 0.121 0.879 9 O -0.344 6.344 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.052 4.052 13 C -0.138 4.138 14 C -0.152 4.152 15 C 0.085 3.915 16 C -0.494 4.494 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.425 5.425 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.218 4.218 25 C -0.187 4.187 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.218 0.782 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.202 1.443 10.604 20.260 hybrid contribution 1.468 0.709 0.508 1.708 sum -15.734 2.152 11.112 19.382 Atomic orbital electron populations 1.18872 0.84618 1.03090 1.03077 1.22436 0.93930 1.01865 0.99839 1.22076 0.93346 1.01054 1.02222 1.18788 0.84398 0.99559 0.92736 1.60311 1.07352 1.58940 1.04133 1.22606 0.87853 1.00951 0.98615 1.21831 0.90956 0.86362 0.95398 0.87873 1.86633 1.74836 1.17036 1.55853 1.23096 0.94439 1.00348 0.85995 1.85888 1.21652 1.87880 1.27844 1.18622 0.80308 1.11364 0.94930 1.19849 0.95584 1.04997 0.93357 1.20985 0.90621 1.03203 1.00423 1.17604 0.93667 0.89495 0.90733 1.19469 0.92200 1.43162 0.94565 0.90545 1.25879 0.99883 0.92444 0.95995 1.69836 1.38168 1.29577 1.04897 0.86322 0.82031 0.79413 0.78978 1.19308 1.20391 1.18727 1.20553 0.93276 1.10036 0.97953 1.20393 0.94604 1.07600 0.96143 0.90208 0.90265 0.89967 0.88753 0.92892 0.83390 0.89999 0.93652 0.78179 0.92812 0.92505 0.88411 0.85652 0.90910 0.88777 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.12 16 2 C -0.18 -1.75 14.13 -37.12 -0.52 -2.28 16 3 C -0.19 -1.94 13.60 -37.12 -0.50 -2.45 16 4 C 0.17 1.50 6.16 -6.61 -0.04 1.46 16 5 N -0.68 -6.64 6.34 -116.89 -0.74 -7.38 16 6 C 0.03 0.27 5.35 -3.82 -0.02 0.25 16 7 C 0.11 1.42 3.45 -26.73 -0.09 1.33 16 8 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 9 O -0.54 -7.51 13.17 -40.06 -0.53 -8.04 16 10 C 0.04 0.58 4.37 37.16 0.16 0.74 16 11 O -0.32 -6.51 10.09 -23.57 -0.24 -6.75 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 14 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 15 C 0.09 2.34 5.57 -106.81 -0.60 1.75 16 16 C -0.46 -12.34 9.04 -37.83 -0.34 -12.68 16 17 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 18 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 19 N -0.80 -20.75 10.96 55.54 0.61 -20.14 16 20 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 24 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 25 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.35 3.39 8.71 -39.29 -0.34 3.05 16 32 H 0.08 0.69 8.14 -51.94 -0.42 0.26 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.37 3.99 9.05 45.56 0.41 4.40 16 35 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 36 H 0.06 0.81 7.66 -51.93 -0.40 0.42 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -31.00 355.52 -9.15 -40.15 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.15 Total: 10.10 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -3.43 Total: -27.00 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: -0.13 Total: -27.52 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.77 Total: -14.79 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.00 -9.15 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336770853.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.187 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds