Wall clock time and date at job start Tue Mar 31 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17404 * 179.97438 * 2 1 4 4 C 1.47199 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46869 * 215.79212 * 4 3 2 6 6 C 1.46905 * 110.99894 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47069 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47429 * 304.99911 * 7 6 5 9 9 O 1.42904 * 109.47383 * 64.99654 * 7 6 5 10 10 C 1.52999 * 109.47064 * 184.99671 * 7 6 5 11 11 O 1.42906 * 109.47017 * 174.99934 * 10 7 6 12 12 C 1.35672 * 116.99791 * 180.02562 * 11 10 7 13 13 C 1.39311 * 119.81899 * 359.72420 * 12 11 10 14 14 C 1.36438 * 120.18358 * 179.76209 * 13 12 11 15 15 C 1.40830 * 119.81289 * 0.51455 * 14 13 12 16 16 C 1.41218 * 120.17970 * 179.72046 * 15 14 13 17 17 H 1.07998 * 120.00072 * 24.56905 * 16 15 14 18 18 C 1.39890 * 120.00080 * 204.56816 * 16 15 14 19 19 N 1.30886 * 119.99515 * 17.93469 * 18 16 15 20 20 Si 1.86792 * 120.00234 * 197.93138 * 18 16 15 21 21 H 1.48508 * 109.47014 * 59.99897 * 20 18 16 22 22 H 1.48495 * 109.47153 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47147 * 300.00398 * 20 18 16 24 24 C 1.40830 * 119.63994 * 359.73973 * 15 14 13 25 25 C 1.36440 * 119.81285 * 359.97438 * 24 15 14 26 26 H 1.09001 * 109.47281 * 144.21057 * 1 2 3 27 27 H 1.08995 * 109.47381 * 264.20733 * 1 2 3 28 28 H 1.09002 * 109.47084 * 24.21015 * 1 2 3 29 29 H 1.08993 * 109.46892 * 95.79431 * 4 3 2 30 30 H 1.09002 * 109.47084 * 335.78985 * 4 3 2 31 31 H 1.00907 * 111.00070 * 303.95448 * 5 4 3 32 32 H 1.08992 * 109.46950 * 59.99491 * 6 5 4 33 33 H 1.09004 * 109.46612 * 299.99424 * 6 5 4 34 34 H 0.96696 * 113.99731 * 59.99663 * 9 7 6 35 35 H 1.08997 * 109.46979 * 55.00501 * 10 7 6 36 36 H 1.08992 * 109.47112 * 294.99780 * 10 7 6 37 37 H 1.08000 * 119.90560 * 0.02562 * 13 12 11 38 38 H 1.08003 * 120.09115 * 180.25228 * 14 13 12 39 39 H 0.96999 * 119.99379 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.09104 * 179.97438 * 24 15 14 41 41 H 1.07999 * 119.90304 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 7 4.6066 1.1257 0.8100 6 6 6.0751 1.1592 0.8325 7 6 6.5453 2.3407 1.6832 8 1 6.0953 3.2601 1.3086 9 8 6.1510 2.1364 3.0415 10 6 8.0694 2.4504 1.6057 11 8 8.4989 3.6208 2.3041 12 6 9.8327 3.8674 2.3308 13 6 10.7120 2.9912 1.6985 14 6 12.0544 3.2346 1.7165 15 6 12.5512 4.3695 2.3861 16 6 13.9397 4.6257 2.4147 17 1 14.5783 4.2275 1.6401 18 6 14.4879 5.3953 3.4462 19 7 13.8133 5.5829 4.5521 20 14 16.1824 6.1551 3.2455 21 1 16.1787 7.0718 2.0771 22 1 16.5319 6.9166 4.4716 23 1 17.1842 5.0806 3.0283 24 6 11.6560 5.2474 3.0273 25 6 10.3159 4.9927 2.9949 26 1 -0.3634 -0.8336 -0.6010 27 1 -0.3634 -0.1037 1.0224 28 1 -0.3633 0.9373 -0.4214 29 1 4.4812 0.1059 -1.0224 30 1 4.4822 -0.9351 0.4214 31 1 4.2303 2.0012 0.4781 32 1 6.4515 1.2714 -0.1842 33 1 6.4532 0.2303 1.2595 34 1 6.5154 1.3346 3.4405 35 1 8.3762 2.5172 0.5619 36 1 8.5207 1.5692 2.0614 37 1 10.3296 2.1191 1.1889 38 1 12.7344 2.5565 1.2223 39 1 14.1933 6.1169 5.2672 40 1 12.0291 6.1197 3.5433 41 1 9.6281 5.6647 3.4865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336770861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:55 Heat of formation + Delta-G solvation = -24.949680 kcal Electronic energy + Delta-G solvation = -21067.505574 eV Core-core repulsion = 17720.579192 eV Total energy + Delta-G solvation = -3346.926381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.11988 -37.90939 -36.43758 -35.73571 -33.92376 -33.31594 -31.00048 -29.82510 -29.13729 -28.66960 -26.21115 -24.76064 -23.70210 -22.05126 -20.70306 -20.56747 -17.69418 -17.35918 -16.90261 -16.50382 -16.16200 -15.48364 -15.26888 -15.15501 -14.51581 -14.17987 -14.12252 -13.95007 -13.81731 -13.70164 -13.23825 -12.91722 -12.76777 -12.31449 -12.22054 -12.13519 -11.77375 -11.39453 -11.12516 -10.99905 -10.82230 -10.60338 -10.30856 -10.09876 -9.98432 -9.90501 -9.82514 -9.33441 -9.01915 -8.76067 -7.64660 -7.03482 -6.72317 -4.25750 2.30554 2.44991 2.78866 2.94773 3.07982 3.10238 3.22204 3.58791 3.94790 3.96823 4.27124 4.48418 4.61824 4.86474 4.90058 5.04331 5.08349 5.17123 5.21332 5.25921 5.27812 5.34098 5.41008 5.56778 5.59968 5.66955 6.00031 6.05312 6.22562 6.53885 6.72780 6.95650 6.97665 7.10946 7.18342 7.37488 7.46145 7.55396 7.76200 7.78880 8.00136 8.20296 8.44953 8.65006 8.89639 8.98500 10.22150 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.063014 B = 0.002095 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.238878 B =13359.092465 C =13626.393636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.179 4.179 3 C -0.187 4.187 4 C 0.173 3.827 5 N -0.677 5.677 6 C 0.030 3.970 7 C 0.115 3.885 8 H 0.104 0.896 9 O -0.540 6.540 10 C 0.038 3.962 11 O -0.317 6.317 12 C -0.010 4.010 13 C -0.168 4.168 14 C -0.199 4.199 15 C 0.088 3.912 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.798 5.798 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.133 4.133 25 C -0.119 4.119 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.347 0.653 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.372 0.628 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.281 0.719 40 H 0.126 0.874 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.756 -8.869 -7.602 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.181 4.181 3 C -0.187 4.187 4 C 0.045 3.955 5 N -0.308 5.308 6 C -0.100 4.100 7 C 0.055 3.945 8 H 0.121 0.879 9 O -0.344 6.344 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.053 4.053 13 C -0.187 4.187 14 C -0.219 4.219 15 C 0.086 3.914 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.424 5.424 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.153 4.153 25 C -0.138 4.138 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.166 0.834 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.218 0.782 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.228 -8.435 -6.784 20.347 hybrid contribution 1.494 -0.168 -1.007 1.810 sum -15.735 -8.603 -7.791 19.552 Atomic orbital electron populations 1.18871 0.84615 1.02987 1.03179 1.22438 0.93929 1.00209 1.01486 1.22081 0.93348 1.02121 1.01164 1.18786 0.84406 0.96149 0.96131 1.60327 1.07427 1.06624 1.56430 1.22616 0.87823 1.00079 0.99450 1.21827 0.91885 0.97594 0.83197 0.87850 1.86641 1.74842 1.48030 1.24922 1.23102 0.94568 0.89333 0.96900 1.85889 1.22277 1.42311 1.72786 1.18621 0.80558 0.99319 1.06780 1.20391 0.94651 0.99276 1.04398 1.20548 0.93508 0.99184 1.08613 1.17596 0.93597 0.89734 0.90523 1.19427 0.92947 1.28589 1.08477 0.90602 1.25878 0.99705 0.94558 0.94049 1.69830 1.38586 1.30548 1.03455 0.86379 0.81914 0.79842 0.78624 1.18892 1.20374 1.19115 1.20983 0.90479 1.00613 1.03196 1.19848 0.95695 0.96306 1.01916 0.90242 0.90051 0.90147 0.92885 0.88740 0.83427 0.93671 0.89947 0.78159 0.92530 0.92793 0.88963 0.88784 0.90840 0.85656 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.24 10.32 34.37 0.35 0.12 16 2 C -0.18 -1.75 14.13 -37.12 -0.52 -2.28 16 3 C -0.19 -1.94 13.60 -37.12 -0.50 -2.45 16 4 C 0.17 1.50 6.16 -6.61 -0.04 1.46 16 5 N -0.68 -6.66 6.42 -116.89 -0.75 -7.41 16 6 C 0.03 0.28 5.32 -3.82 -0.02 0.26 16 7 C 0.12 1.43 3.43 -26.73 -0.09 1.34 16 8 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 9 O -0.54 -7.62 13.25 -40.08 -0.53 -8.15 16 10 C 0.04 0.58 4.36 37.16 0.16 0.74 16 11 O -0.32 -6.51 10.09 -23.57 -0.24 -6.75 16 12 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 13 C -0.17 -3.79 8.96 -39.83 -0.36 -4.14 16 14 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 15 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 16 C -0.46 -12.35 9.04 -37.83 -0.34 -12.69 16 17 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 18 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 19 N -0.80 -20.76 10.96 55.54 0.61 -20.15 16 20 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 25 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.35 3.35 8.71 -39.29 -0.34 3.01 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.37 4.05 9.04 45.56 0.41 4.46 16 35 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 36 H 0.05 0.77 7.64 -51.93 -0.40 0.38 16 37 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 38 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -31.08 355.63 -9.16 -40.25 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.15 Total: 10.17 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -3.43 Total: -26.99 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: -0.14 Total: -27.56 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.77 Total: -14.90 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.08 -9.16 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336770861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.297 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds