Wall clock time and date at job start Tue Mar 31 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46924 * 164.31564 * 3 2 1 5 5 N 1.46894 * 109.46958 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99905 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47270 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47169 * 60.00504 * 7 6 5 9 9 O 1.42893 * 109.47127 * 300.00125 * 7 6 5 10 10 C 1.53002 * 109.46926 * 179.97438 * 7 6 5 11 11 O 1.42902 * 109.46972 * 184.99925 * 10 7 6 12 12 C 1.35675 * 117.00271 * 180.02562 * 11 10 7 13 13 C 1.39306 * 119.82220 * 180.02562 * 12 11 10 14 14 C 1.36436 * 120.18886 * 179.72675 * 13 12 11 15 15 C 1.40835 * 119.80911 * 0.27535 * 14 13 12 16 16 C 1.41212 * 120.17588 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00342 * 204.53726 * 16 15 14 18 18 C 1.39888 * 120.00291 * 24.54342 * 16 15 14 19 19 N 1.30881 * 120.00110 * 17.93888 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.94387 * 18 16 15 21 21 H 1.48499 * 109.47348 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47114 * 119.99694 * 20 18 16 23 23 H 1.48496 * 109.46987 * 239.99470 * 20 18 16 24 24 C 1.40825 * 119.64216 * 359.97438 * 15 14 13 25 25 C 1.36442 * 119.81239 * 0.02562 * 24 15 14 26 26 H 4.44659 * 5.63322 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47233 * 44.32021 * 3 2 1 28 28 H 1.08999 * 109.47004 * 284.31235 * 3 2 1 29 29 H 1.09008 * 109.47037 * 59.99923 * 4 3 2 30 30 H 1.09004 * 109.46915 * 300.00399 * 4 3 2 31 31 H 1.00898 * 111.00375 * 56.05344 * 5 4 3 32 32 H 1.09004 * 109.47075 * 59.99493 * 6 5 4 33 33 H 1.09001 * 109.47106 * 300.00407 * 6 5 4 34 34 H 0.96709 * 114.00076 * 299.99360 * 9 7 6 35 35 H 1.08998 * 109.47200 * 65.00307 * 10 7 6 36 36 H 1.08996 * 109.47334 * 304.99796 * 10 7 6 37 37 H 1.08003 * 119.90618 * 359.97438 * 13 12 11 38 38 H 1.07995 * 120.09717 * 180.29384 * 14 13 12 39 39 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.09304 * 180.02562 * 24 15 14 41 41 H 1.08003 * 119.90556 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3897 -0.3900 5 7 4.6243 1.3906 -0.3894 6 6 5.1501 2.7114 -0.7595 7 6 6.6796 2.6732 -0.7473 8 1 7.0302 1.9291 -1.4626 9 8 7.1369 2.3282 0.5618 10 6 7.2271 4.0487 -1.1334 11 8 8.6510 3.9830 -1.2355 12 6 9.2979 5.1271 -1.5721 13 6 10.6861 5.1295 -1.6886 14 6 11.3437 6.2745 -2.0321 15 6 10.6156 7.4576 -2.2634 16 6 11.2884 8.6469 -2.6198 17 1 10.8343 9.6057 -2.4174 18 6 12.5430 8.5833 -3.2351 19 7 12.9412 7.4698 -3.7959 20 14 13.6502 10.0878 -3.2564 21 1 12.9725 11.2111 -2.5607 22 1 14.9257 9.7735 -2.5640 23 1 13.9324 10.4748 -4.6620 24 6 9.2130 7.4479 -2.1383 25 6 8.5706 6.2944 -1.7941 26 1 -1.0503 -0.0005 -0.0001 27 1 3.0097 -0.7344 -0.7180 28 1 3.0094 -0.2532 0.9958 29 1 2.7916 2.1249 0.3280 30 1 2.7918 1.6437 -1.3857 31 1 4.9866 0.6730 -0.9992 32 1 4.7998 3.4555 -0.0441 33 1 4.8008 2.9748 -1.7579 34 1 6.8615 2.9484 1.2508 35 1 6.9508 4.7769 -0.3710 36 1 6.8076 4.3505 -2.0931 37 1 11.2429 4.2215 -1.5104 38 1 12.4196 6.2735 -2.1266 39 1 13.8114 7.4256 -4.2223 40 1 8.6473 8.3509 -2.3144 41 1 7.4949 6.2854 -1.6974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336778674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:58 Heat of formation + Delta-G solvation = -22.171839 kcal Electronic energy + Delta-G solvation = -21186.169372 eV Core-core repulsion = 17839.363447 eV Total energy + Delta-G solvation = -3346.805925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.12198 -37.96008 -36.60551 -35.86540 -33.93958 -33.31807 -31.08991 -29.89203 -29.16559 -28.65153 -25.43836 -24.45799 -22.75724 -22.01784 -20.68519 -20.56120 -18.47179 -17.36370 -17.19227 -16.80136 -16.19284 -15.74329 -15.44009 -15.19653 -14.68415 -14.40481 -14.14873 -13.95176 -13.64728 -13.17216 -13.06771 -12.69501 -12.35004 -12.22295 -12.13352 -11.96021 -11.75973 -11.39216 -11.16417 -10.93754 -10.80322 -10.65588 -10.57537 -10.45687 -10.00927 -9.88446 -9.82041 -9.34103 -9.02583 -8.76731 -7.64798 -7.03690 -6.72765 -4.25933 2.42285 2.49449 2.76577 2.94574 3.08722 3.13834 3.20109 3.46158 3.94907 4.01096 4.32292 4.49561 4.61539 4.69406 4.78649 4.92342 4.96826 5.11361 5.18942 5.27313 5.42572 5.55169 5.58158 5.61734 5.66709 5.67570 6.00638 6.05272 6.22394 6.56561 6.72725 6.97151 6.99289 7.10734 7.18196 7.26465 7.45962 7.55301 7.75599 7.78739 8.00395 8.20121 8.44880 8.65083 8.89614 8.98337 10.21639 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.053778 B = 0.002128 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.533278 B =13157.047570 C =13453.962454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C -0.012 4.012 4 C 0.064 3.936 5 N -0.679 5.679 6 C 0.030 3.970 7 C 0.115 3.885 8 H 0.103 0.897 9 O -0.540 6.540 10 C 0.038 3.962 11 O -0.317 6.317 12 C -0.009 4.009 13 C -0.119 4.119 14 C -0.133 4.133 15 C 0.087 3.913 16 C -0.463 4.463 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.799 5.799 20 Si 0.907 3.093 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.275 1.275 24 C -0.198 4.198 25 C -0.169 4.169 26 H 0.217 0.783 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.345 0.655 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.371 0.629 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.279 0.721 40 H 0.094 0.906 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 -10.140 4.795 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.185 4.185 3 C -0.049 4.049 4 C -0.065 4.065 5 N -0.310 5.310 6 C -0.099 4.099 7 C 0.055 3.945 8 H 0.121 0.879 9 O -0.344 6.344 10 C -0.039 4.039 11 O -0.233 6.233 12 C -0.052 4.052 13 C -0.138 4.138 14 C -0.152 4.152 15 C 0.085 3.915 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.425 5.425 20 Si 0.731 3.269 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.201 1.201 24 C -0.218 4.218 25 C -0.187 4.187 26 H 0.234 0.766 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.163 0.837 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.218 0.782 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.569 -10.789 5.038 19.600 hybrid contribution -0.408 1.413 -0.970 1.762 sum -15.977 -9.376 4.069 18.966 Atomic orbital electron populations 1.24935 0.96002 1.00462 1.01385 1.23057 0.94493 1.00705 1.00275 1.18661 0.84391 0.97813 1.04020 1.21883 0.87782 0.96671 1.00213 1.60281 1.06359 1.05707 1.58694 1.22571 0.95498 0.91796 1.00071 1.21835 0.90568 0.95734 0.86399 0.87880 1.86626 1.77999 1.53676 1.16071 1.23102 0.82920 0.97173 1.00726 1.85885 1.17517 1.33078 1.86782 1.18620 0.91795 0.84692 1.10115 1.19846 0.90549 0.98494 1.04892 1.20984 0.99977 0.92050 1.02223 1.17608 0.90634 0.93365 0.89924 1.19488 1.01323 0.93797 1.34711 0.90526 1.25882 0.98151 0.97311 0.92873 1.69844 1.19674 1.27471 1.25489 0.86289 0.79991 0.81973 0.78612 1.18487 1.19721 1.20098 1.20554 0.94489 0.96386 1.10387 1.20395 0.97226 0.93825 1.07298 0.76630 0.89567 0.88429 0.90534 0.94858 0.83713 0.90252 0.93884 0.78192 0.92863 0.92561 0.88408 0.85649 0.90964 0.88783 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.59 19.25 29.55 0.57 -1.03 16 2 C -0.18 -1.57 13.34 -37.12 -0.50 -2.07 16 3 C -0.01 -0.09 5.96 -29.51 -0.18 -0.26 16 4 C 0.06 0.49 5.64 -3.82 -0.02 0.47 16 5 N -0.68 -5.86 6.37 -113.77 -0.72 -6.58 16 6 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 7 C 0.11 1.39 3.45 -26.73 -0.09 1.30 16 8 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 9 O -0.54 -7.26 13.17 -40.06 -0.53 -7.79 16 10 C 0.04 0.57 4.37 37.16 0.16 0.73 16 11 O -0.32 -6.48 10.09 -23.55 -0.24 -6.71 16 12 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 13 C -0.12 -2.91 9.92 -39.83 -0.40 -3.31 16 14 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 15 C 0.09 2.33 5.57 -106.81 -0.60 1.74 16 16 C -0.46 -12.32 9.04 -37.84 -0.34 -12.66 16 17 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 18 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 19 N -0.80 -20.73 10.96 55.54 0.61 -20.12 16 20 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 25 C -0.17 -3.80 8.96 -39.83 -0.36 -4.15 16 26 H 0.22 0.91 7.80 -54.08 -0.42 0.49 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.34 2.73 8.73 -39.29 -0.34 2.38 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.37 3.87 9.05 45.56 0.41 4.28 16 35 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 36 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 37 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 38 H 0.13 3.37 6.16 -52.49 -0.32 3.04 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 41 H 0.09 1.78 6.27 -52.48 -0.33 1.45 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -30.39 355.21 -8.55 -38.94 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.15 Total: 10.00 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -2.84 Total: -26.75 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: -0.12 Total: -26.70 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.77 Total: -14.50 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.39 -8.55 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336778674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.769 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds