Wall clock time and date at job start Tue Mar 31 2020 07:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53007 * 109.46924 * 164.31564 * 3 2 1 5 5 N 1.46894 * 109.46958 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99905 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47270 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47169 * 60.00504 * 7 6 5 9 9 O 1.42893 * 109.47127 * 300.00125 * 7 6 5 10 10 C 1.53002 * 109.46926 * 179.97438 * 7 6 5 11 11 O 1.42902 * 109.46972 * 184.99925 * 10 7 6 12 12 C 1.35675 * 117.00271 * 180.02562 * 11 10 7 13 13 C 1.39306 * 119.82220 * 180.02562 * 12 11 10 14 14 C 1.36436 * 120.18886 * 179.72675 * 13 12 11 15 15 C 1.40835 * 119.80911 * 0.27535 * 14 13 12 16 16 C 1.41212 * 120.17588 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00342 * 204.53726 * 16 15 14 18 18 C 1.39888 * 120.00291 * 24.54342 * 16 15 14 19 19 N 1.30881 * 120.00110 * 17.93888 * 18 16 15 20 20 Si 1.86803 * 119.99833 * 197.94387 * 18 16 15 21 21 H 1.48499 * 109.47348 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47114 * 119.99694 * 20 18 16 23 23 H 1.48496 * 109.46987 * 239.99470 * 20 18 16 24 24 C 1.40825 * 119.64216 * 359.97438 * 15 14 13 25 25 C 1.36442 * 119.81239 * 0.02562 * 24 15 14 26 26 H 4.44659 * 5.63322 * 179.97438 * 4 1 2 27 27 H 1.09000 * 109.47233 * 44.32021 * 3 2 1 28 28 H 1.08999 * 109.47004 * 284.31235 * 3 2 1 29 29 H 1.09008 * 109.47037 * 59.99923 * 4 3 2 30 30 H 1.09004 * 109.46915 * 300.00399 * 4 3 2 31 31 H 1.00898 * 111.00375 * 56.05344 * 5 4 3 32 32 H 1.09004 * 109.47075 * 59.99493 * 6 5 4 33 33 H 1.09001 * 109.47106 * 300.00407 * 6 5 4 34 34 H 0.96709 * 114.00076 * 299.99360 * 9 7 6 35 35 H 1.08998 * 109.47200 * 65.00307 * 10 7 6 36 36 H 1.08996 * 109.47334 * 304.99796 * 10 7 6 37 37 H 1.08003 * 119.90618 * 359.97438 * 13 12 11 38 38 H 1.07995 * 120.09717 * 180.29384 * 14 13 12 39 39 H 0.97005 * 119.99879 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.09304 * 180.02562 * 24 15 14 41 41 H 1.08003 * 119.90556 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3897 -0.3900 5 7 4.6243 1.3906 -0.3894 6 6 5.1501 2.7114 -0.7595 7 6 6.6796 2.6732 -0.7473 8 1 7.0302 1.9291 -1.4626 9 8 7.1369 2.3282 0.5618 10 6 7.2271 4.0487 -1.1334 11 8 8.6510 3.9830 -1.2355 12 6 9.2979 5.1271 -1.5721 13 6 10.6861 5.1295 -1.6886 14 6 11.3437 6.2745 -2.0321 15 6 10.6156 7.4576 -2.2634 16 6 11.2884 8.6469 -2.6198 17 1 10.8343 9.6057 -2.4174 18 6 12.5430 8.5833 -3.2351 19 7 12.9412 7.4698 -3.7959 20 14 13.6502 10.0878 -3.2564 21 1 12.9725 11.2111 -2.5607 22 1 14.9257 9.7735 -2.5640 23 1 13.9324 10.4748 -4.6620 24 6 9.2130 7.4479 -2.1383 25 6 8.5706 6.2944 -1.7941 26 1 -1.0503 -0.0005 -0.0001 27 1 3.0097 -0.7344 -0.7180 28 1 3.0094 -0.2532 0.9958 29 1 2.7916 2.1249 0.3280 30 1 2.7918 1.6437 -1.3857 31 1 4.9866 0.6730 -0.9992 32 1 4.7998 3.4555 -0.0441 33 1 4.8008 2.9748 -1.7579 34 1 6.8615 2.9484 1.2508 35 1 6.9508 4.7769 -0.3710 36 1 6.8076 4.3505 -2.0931 37 1 11.2429 4.2215 -1.5104 38 1 12.4196 6.2735 -2.1266 39 1 13.8114 7.4256 -4.2223 40 1 8.6473 8.3509 -2.3144 41 1 7.4949 6.2854 -1.6974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336778674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:57 Heat of formation + Delta-G solvation = -42.418786 kcal Electronic energy + Delta-G solvation = -21187.047346 eV Core-core repulsion = 17839.363447 eV Total energy + Delta-G solvation = -3347.683899 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65027 -39.12928 -37.94353 -36.94100 -35.17907 -34.59414 -32.15014 -31.48304 -30.91466 -29.73074 -26.90723 -25.84214 -23.49765 -23.20145 -22.45614 -22.13917 -19.25620 -19.06640 -18.63628 -17.80659 -17.34076 -17.04923 -16.64439 -16.20426 -15.78110 -15.67944 -15.47254 -15.29776 -14.78825 -14.57397 -14.07298 -13.94148 -13.88918 -13.61167 -13.51462 -13.03669 -12.94305 -12.80169 -12.62843 -12.55018 -12.37770 -11.91394 -11.69109 -11.57996 -11.28469 -11.16052 -11.01996 -10.88399 -10.85751 -9.56267 -9.42475 -8.92567 -8.59636 -6.22796 0.94580 1.02470 1.40155 1.51126 1.55390 1.83002 1.91289 2.22992 2.40036 2.72473 3.15351 3.54576 3.70187 3.72935 3.90030 4.01414 4.07988 4.18500 4.22365 4.29112 4.36019 4.42107 4.47654 4.55837 4.66150 4.87016 4.99719 5.01962 5.03586 5.07855 5.18456 5.21886 5.28544 5.58570 5.64494 5.88381 5.91501 6.05925 6.26397 6.36109 6.56770 6.70113 6.80650 6.90552 6.95120 7.10426 8.37074 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.053778 B = 0.002128 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.533278 B =13157.047570 C =13453.962454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.218 4.218 3 C -0.009 4.009 4 C 0.070 3.930 5 N -0.685 5.685 6 C 0.041 3.959 7 C 0.124 3.876 8 H 0.097 0.903 9 O -0.559 6.559 10 C 0.029 3.971 11 O -0.331 6.331 12 C 0.001 3.999 13 C -0.135 4.135 14 C -0.152 4.152 15 C 0.053 3.947 16 C -0.499 4.499 17 H 0.076 0.924 18 C 0.033 3.967 19 N -0.832 5.832 20 Si 0.982 3.018 21 H -0.258 1.258 22 H -0.265 1.265 23 H -0.267 1.267 24 C -0.207 4.207 25 C -0.165 4.165 26 H 0.243 0.757 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.349 0.651 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.106 0.894 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 -10.089 5.033 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.219 4.219 3 C -0.046 4.046 4 C -0.059 4.059 5 N -0.317 5.317 6 C -0.089 4.089 7 C 0.064 3.936 8 H 0.115 0.885 9 O -0.365 6.365 10 C -0.048 4.048 11 O -0.247 6.247 12 C -0.043 4.043 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.051 3.949 16 C -0.528 4.528 17 H 0.094 0.906 18 C -0.181 4.181 19 N -0.459 5.459 20 Si 0.803 3.197 21 H -0.181 1.181 22 H -0.190 1.190 23 H -0.192 1.192 24 C -0.227 4.227 25 C -0.184 4.184 26 H 0.259 0.741 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.167 0.833 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.242 -10.754 5.287 20.998 hybrid contribution -0.068 1.246 -0.995 1.596 sum -17.310 -9.508 4.292 20.211 Atomic orbital electron populations 1.25723 0.96965 0.99434 1.00403 1.23527 0.95357 1.01719 1.01260 1.18636 0.83987 0.97736 1.04196 1.21813 0.87019 0.96904 1.00133 1.60255 1.06973 1.05529 1.58964 1.22427 0.93085 0.92417 1.00973 1.21774 0.92302 0.93766 0.85764 0.88538 1.86596 1.78573 1.54462 1.16868 1.23512 0.79879 0.99556 1.01836 1.85879 1.20674 1.31806 1.86294 1.18690 0.91583 0.85773 1.08263 1.20014 0.91848 0.98319 1.05186 1.20896 0.99421 0.92957 1.03879 1.17974 0.91998 0.93840 0.91138 1.19733 1.02938 0.93791 1.36376 0.90566 1.26745 0.99023 1.00502 0.91829 1.69898 1.20429 1.29541 1.26016 0.85158 0.77738 0.77872 0.78912 1.18133 1.19016 1.19176 1.20807 0.93920 0.97733 1.10231 1.20706 0.99104 0.92710 1.05878 0.74099 0.88691 0.88572 0.90906 0.94740 0.83276 0.89393 0.92891 0.76773 0.91532 0.91464 0.87552 0.87276 0.90222 0.87588 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.80 19.25 74.32 1.43 -1.37 16 2 C -0.22 -3.43 13.34 31.13 0.42 -3.01 16 3 C -0.01 -0.11 5.96 28.79 0.17 0.06 16 4 C 0.07 0.95 5.64 86.31 0.49 1.44 16 5 N -0.69 -10.44 6.37 -513.87 -3.27 -13.71 16 6 C 0.04 0.64 5.35 86.30 0.46 1.11 16 7 C 0.12 2.74 3.45 30.59 0.11 2.85 16 8 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 9 O -0.56 -14.04 13.17 -144.36 -1.90 -15.94 16 10 C 0.03 0.78 4.37 71.98 0.31 1.10 16 11 O -0.33 -13.02 10.09 -85.30 -0.86 -13.88 16 12 C 0.00 0.04 6.71 22.79 0.15 0.19 16 13 C -0.13 -6.70 9.92 22.11 0.22 -6.48 16 14 C -0.15 -8.25 8.64 22.48 0.19 -8.05 16 15 C 0.05 2.89 5.57 -21.28 -0.12 2.77 16 16 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 17 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 18 C 0.03 1.67 5.13 85.23 0.44 2.11 16 19 N -0.83 -44.22 10.96 21.82 0.24 -43.98 16 20 Si 0.98 38.55 29.60 68.60 2.03 40.58 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 24 C -0.21 -10.14 9.74 22.48 0.22 -9.92 16 25 C -0.17 -7.19 8.96 22.11 0.20 -6.99 16 26 H 0.24 1.48 7.80 -4.40 -0.03 1.45 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 30 H 0.03 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.35 4.87 8.73 -89.70 -0.78 4.09 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.38 7.24 9.05 -74.05 -0.67 6.57 16 35 H 0.07 1.68 7.63 -2.39 -0.02 1.66 16 36 H 0.07 1.73 7.66 -2.39 -0.02 1.71 16 37 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 38 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 39 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 40 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.13 4.56 6.27 -2.91 -0.02 4.55 16 Total: -1.00 -65.83 355.21 0.72 -65.11 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.41 Total: 32.94 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 4.90 Total: -51.12 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -3.03 Total: -57.70 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.76 Total: -29.82 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -65.83 0.72 -65.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336778674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.692 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds